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2018-05-18antlr: Turn off CSharp (#8157)Elizabeth Fischer1-0/+1
Spack doesn't have a CSharp package, so the only time ANTLR would succeed is if a system-installed CSharp was available. This disables CSharp support, which enables building on systems without system-installed CSharp.
2018-05-18Turning off parallel during make install for parallel-netcdf. (#8186)Jon Rood1-0/+4
2018-05-18Added vim 8.1 (#8185)sknigh1-0/+1
2018-05-18task: Add version 2.5.1 (#8184)Eric1-0/+1
2018-05-18nco: Find NetCDF (#8159)Elizabeth Fischer1-0/+7
* nco: Find NetCDF properly * flake8
2018-05-18trinity: add perl+threads dependency (#8143)Levi Baber1-0/+1
2018-05-17libexpat: Fix for older systems, move to GitHub (#8135)Elizabeth Fischer1-2/+7
* PR #4945 did not make this work on SuSE 11. Adding the latest version of libexpat did. Also update for Expat's move to GitHub. * Update package.py * Update package.py Move to url_for_version()
2018-05-17trinity: fixing jdk dependency (#8140)Levi Baber1-1/+1
2018-05-17perl: adding threads variant (#8142)Levi Baber1-0/+6
2018-05-17silo: support version 4.10.2-bsd (#8164)Daryl W. Grunau1-1/+3
2018-05-17Update scorep and friends to newest versions (#8171)Michael Kuhn4-7/+20
2018-05-17Changed netlib-lapack to fix an error in the CMake setup. (#8172)Serban Maerean2-6/+21
* Changed netlib-lapack to fix an error in their CMake setup. Changed netlib-lapack spackage file to add Fortran flags correctly for XL compiler. * Fixed line length -- forgot abt flake8... * Fix the package version where the ibm patch applies.
2018-05-17R dismo 1 1 4 - new package (#8176)peetsv1-0/+40
* py-pyfaidx: adding new package * updating the url * r-dismo: new package
2018-05-17cmake: update version (#8178)Matthias Diener1-0/+1
2018-05-17Convert lazy singleton functions to Singleton objectTodd Gamblin5-14/+14
- simplify the singleton pattern across the codebase - reduce lines of code needed for crufty initialization - reduce functions that need to mess with a global - Singletons whose semantics changed: - spack.store.store() -> spack.store - spack.repo.path() -> spack.repo.path - spack.config.config() -> spack.config.config - spack.caches.fetch_cache() -> spack.caches.fetch_cache - spack.caches.misc_cache() -> spack.caches.misc_cache
2018-05-17init: initialize spack.store lazilyTodd Gamblin5-22/+24
- spack.store was previously initialized at the spack.store module level, but this means the store has to be initialized on every spack call. - this moves the state in spack.store to a singleton so that the store is only initialized when needed.
2018-05-17init: factor paths out of spack/__init__.py and into spack.paths moduleTodd Gamblin6-10/+10
2018-05-17flex: use 2.6.3. by default (#8154)Denis Davydov1-3/+6
Fixes #8152 Flex 2.6.4 doesn't build with gcc@7:. This sets Flex 2.6.3 as the preferred version. The flex package had a conflict directive for this but originally the recorded conflict was specific to ubuntu; this appears to be an issue on multiple operating systems so this also updates the conflict to be more general and adds a comment which links to the relevant issues.
2018-05-17swap-assembler: Create new package. (#8144)lingnanyuan1-0/+43
* swap-assembler: Create new package. * swap-assembler: fix flake8 error.
2018-05-17pv: initial commit (#8147)Christoph Junghans1-0/+36
2018-05-17r-rstan: new version and dependents (#8158)Levi Baber3-0/+4
* r-stanheaders: new version * r-rstan: new version * r-rcppeigen: new version * r-rstan: requires newer version of r-rcppeigen
2018-05-17Add version 6.1. to ESSL spackage file. (#8170)Serban Maerean1-0/+1
2018-05-17cbtf-argonavis-gui: add openspeedshop-utils package to address qt conflicts ↵Jim Galarowicz8-211/+689
(#8066) Fixes #7946 Creates an openspeedshop-utils package that does not depend on qt3 and can be used to resolve the needs of cbtf-argonavis-gui. Changes for creating a release versus develop build are also included. There are package versions which are no longer relevant (e.g. 1.3.0 for cbtf-argonavis-gui has been replaced with 1.3.0.0) but these versions need to be kept to allow uninstalling them; issue #8173 has been created to investigate this.
2018-05-16Add dependencies for py-dask (#8120)Adam J. Stewart11-17/+367
2018-05-16r-rcppcnpy: a new package. (#8139)健美猞猁1-0/+39
* r-rcppcnpy: a new package. * Specify dependency versions. * Update dependency.
2018-05-15Add list_url to allow download of prior versions from cran archive (#8141)Eric2-0/+2
2018-05-15Add libunwind-1.2.1 (#8145)David Böhme1-0/+1
2018-05-15astyle: add 3.1 (#8137)Denis Davydov1-0/+1
2018-05-14patch petsc test cases for XL compiler (#8091)Serban Maerean2-0/+62
- After spack install, these test cases are built in a seperate step, outside of spack, but they need to patched after staging so users don't have to do it in a seperate step. - The test cases are installed under `<petsc install directory>/share/petsc/examples` and can be built and executed by invoking `gmake -f gmakefile.test` in that directory.
2018-05-14Added Shim to Support hdf5+mpi in Spack Silo (#8130)Robert Pavel1-1/+9
* Added Shim to Support hdf5+mpi in Spack Silo Added compatibility for hdf5+mpi to silo spackage to support spackages with dependency chains that include silo and hf5+mpi * Fixed fixable flake8 issue with silo spackage Fixed missing whitespace around operator * Setting MPI Variant to Default to True As per guidance changing variant to default to MPI builds
2018-05-14salmon: adding in version restriction for boost (#8129)snehring1-1/+1
1.67 does not work with this
2018-05-14prenek missing X.h (#8121)Cameron Smith1-0/+9
2018-05-14lordec: Create new package. (#8095)lingnanyuan1-0/+44
* lordec: Create new package. * lordec: Add homepage, change to MakefilePackage. * Modify dependency type.
2018-05-14r-fit-models: Create new package (#8122)Eric1-0/+38
2018-05-14r-vipor: Create new package (#8128)Eric1-0/+38
2018-05-14LBANN: add hydrogen as optional dependency (#8085)Brian Van Essen2-6/+188
Add Hydrogen package for fork of Elemental library. Update LBANN to use either Hydrogen or Elemental.
2018-05-14r-shinydashboard: Create new package (#8116)Eric1-0/+40
2018-05-14r-picante: Create new package (#8117)Eric1-0/+40
* r-picante: Create new package * Remove dependency already included in RPackage base class
2018-05-14r-squash: Create new package (#8118)Eric1-0/+36
* r-squash: Create new package * Remove dependency already included in RPackage base class * remove extra file
2018-05-14Update py-llvmlite to reflect llvm@6 requirement for versions >0.23.0 (#8109)Sajid Ali1-2/+5
* new file: package.py * corrected using pep8online.com * Update package.py * correct typo * as requested * modified: package.py * Update package.py
2018-05-14Aegean: new package (#8113)Levi Baber2-0/+46
* aegean: new package * genometools: set dependent env for aegean
2018-05-14charliecloud: fix copyright (#8115)Christoph Junghans1-1/+1
2018-05-14dealii: another fix for quick tests only in 9.0 and thus hash (#8114)Denis Davydov1-1/+1
2018-05-14A new pacakge: Kaiju. (#8111)健美猞猁1-0/+48
* A new package: kaiju. * Replace ftp:// with https://.
2018-05-14hisea: new package (#8112)Levi Baber1-0/+43
2018-05-14Add numexpr 3 (#8107)Sajid Ali1-0/+48
* new file: package.py * corrected using pep8online.com * Update package.py * correct typo * as requested
2018-05-14dealii: update hash due to upstream changes (#8105)Denis Davydov1-1/+1
2018-05-14add version 0.6.2 to yaml-cpp (#7931)healther1-1/+11
2018-05-13Add cmake for newer version of libjpeg-turbo (#8102)Sajid Ali1-4/+21
* modified: package.py * add official build reference. * Update package.py * Update package.py * Update package.py * fixed with pep8online.com * update make to make() * change homepage
2018-05-13charliecloud: initial commit (#8106)Christoph Junghans1-0/+38