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2020-03-16veccore: added package at v0.6.0 (#15472)Seth R. Johnson1-0/+40
2020-03-16CMakePackage: convert variants to CMake arguments (#14376)Seth R. Johnson1-0/+8
Add a 'define_from_variant` helper function to CMake-based Spack packages to convert package variants into CMake arguments. For example: args.append('-DFOO=%s' % ('ON' if '+foo' in self.spec else 'OFF')) can be replaced with: args.append(self.define_from_variant('foo')) The following conversions are handled automatically: * Flag variants will be converted to CMake booleans * Multivalued variants will be converted to semicolon-separated strings * Other variant values are converted to CMake string arguments This also adds a 'define' helper method to convert any variable to a CMake argument. It has the same conversion rules as 'define_from_variant' (but operates directly on values rather than requiring the user to supply the name of a package variant).
2020-03-16silo: depends on hdf5@:1.10.999 (#15495)Erik Schnetter1-0/+1
Silo does not build with HDF5 1.12.
2020-03-16tixi: added package at v3.0.3 (#15490)Melven Roehrig-Zoellner1-0/+24
2020-03-16swig: added v4.0.1 (#15496)Erik Schnetter1-0/+1
2020-03-16ncurses: added v6.2 (#15494)Erik Schnetter1-0/+1
2020-03-16cmake: added v3.16.5 (#15492)Erik Schnetter1-0/+1
2020-03-16unqlite: added package at v1.1.9 (#15501)Matthieu Dorier1-0/+18
2020-03-15gcc: Don't apply macOS 9.2.0 patch for 9.3.0 (#15493)Erik Schnetter1-1/+1
The patch neither applies nor is necessary.
2020-03-14Limit binutils to <= 2.33.1 (#15470)Tim Haines1-1/+1
HPCToolKit <= 2020.03.01 does not build with binutils 2.34.
2020-03-13LIBXSMM 1.15 (#15482)Hans Pabst1-2/+3
* LIBXSMM 1.15 * LIBXSMM: renamed development version according to the related branch on GitHub.
2020-03-13py-astpretty: add new package (#15484)Adam J. Stewart1-0/+21
* py-astpretty: add new package * pkg_resources needed at run-time
2020-03-13package: Add fetch_options variable (#15317)Michael Kuhn10-35/+73
PR #15212 added a new connect_timeout option that can be overridden using fetch_options but had to specified per-version. This adds a new per-package variable that can be used to override fetch_options for all versions in the package. This includes connect_timeout as well as 'cookie' (e.g. for the jdk package). Packages can combine package-level fetch_options with per-version fetch_options, in which case the version fetch_options completely override the package-level fetch_options. This commit includes tests for the added behavior.
2020-03-13pgi: add missing paths in setup_run_environment (#15480)Melven Roehrig-Zoellner1-0/+3
2020-03-13Add py-h5glance versions 0.5 & 0.6 (#15461)Thomas Kluyver1-1/+3
* Add py-h5glance versions 0.5 & 0.6 * List versions newest to oldest
2020-03-13Add new ACTS version (#15479)Hadrien G1-0/+1
2020-03-12Add source highlight package (#15473)Hector1-0/+21
* add GNU source-highlight package * fix flake8 * Allows the package to download from GNU mirrors
2020-03-12gcc: Add 9.3.0 (#15469)Michael Kuhn1-0/+1
2020-03-12cpprestsdk: fix common error and, use boost@1.69.0 or lower (#15463)noguchi-k2-1/+51
2020-03-12Add Caliper v2.3.0 (#15468)David Böhme1-1/+2
2020-03-12Add package jblob-3.0 (#15400)Amjad Kotobi1-0/+35
2020-03-12Change py-merlinwf to py-merlin (#15453)Joe Koning5-103/+25
* Change py-merlinwf to py-merlin to match PyPi. Change py-merlin to py-merlin-info. Move to py-merlin_info. Add py-merlin-info back in. * Update dependent packages for the new merlin name. * Remove non-working pyre and the associated packages, exchanger, py-pythia and py-mlerin-info from citcoms. * Remove blank line.
2020-03-12pfunit: add max_array_rank=(int) variant (#15348)Bryce Allen1-2/+7
* pfunit: add max_array_rank=(int) variant * pfunit: flake8 line length fixes
2020-03-12Update plumed 2.5.4 and 2.6.0 (#15462)Zhiyi Wu1-2/+3
Co-authored-by: zhiyiwu <zhiyi.wu@gtc.ox.ac.uk>
2020-03-12likwid: add compiler selection for ARM and POWER architecture (#14183)Thomas Gruber1-4/+7
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-12plumed: add cython as dependency (#15460)Jeffrey Salmond1-0/+1
2020-03-11add new package: lmbench (#15457)darmac1-0/+30
* add new package: lmbench * refine LDFLAGS append call
2020-03-11revbayes: Update URLs and hashes for old archives (#15451)Nick Booher1-4/+10
* revbayes: Update URLs and hashes for old archives * Switch to url_for_version * Fix whitespace
2020-03-11Update package.py for HDF5 1.12.0 release (#15430)Les Kurz1-0/+2
* Update package.py * Update package.py * add upper bounds to production config_option * fix config_options * Fix mistaken changes.
2020-03-11add new package: php (#15435)darmac1-0/+41
2020-03-11cpio: icc -no-gcc (#15446)Daryl W. Grunau1-0/+5
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-11binutils: Add missing texinfo dependency (#15444)Michael Kuhn1-0/+4
2020-03-11add new package: keyutils (#15433)darmac1-0/+27
2020-03-11add hatchet python package (#15428)Stephanie Brink1-0/+27
2020-03-11libfabric@1.9.1: Add fabtests (#15440)Dr. Christian Tacke1-0/+4
The test utils for the new version 1.9.1 are missing. Add them.
2020-03-11Package for the resultsFile Python module (#15088)Anthony Scemama1-0/+22
* Added resultsFile package * Added comments * Fixed PEP8 * Added Python3 package * Removed py-setuptools
2020-03-11Horovod (#15380)rvinaybharadwaj2-0/+88
2020-03-11kealib: moved to github, added v1.4.12 (#15436)Neil Flood1-3/+4
2020-03-10Add valgrind variant to petsc (#15427)Hector1-1/+4
* Add PETSc valgrind dependency * Remove +debug on valgrind dependency * enh variant description
2020-03-10Fix OpenBLAS 0.2 build, 0.38+ Intel builds, and variant name (#15419)Seth R. Johnson2-19/+44
* Remove ARCH argument in OpenBLAS < 0.3.0 * Fix Intel OpenBLAS that uses lapack 0.3.9 * Improve variant name consistency see https://github.com/spack/spack/issues/15239
2020-03-10gcc: backporting fix for glibc 2.31 (#15403)Mathias Anselmann3-0/+114
* backporting fix for building gcc >= 8.1.0 and gcc <= 9.2.0 with binutils 2.31 * removed trailing whitespace
2020-03-10fix static mumps build error - Added a space at the end of ar vr for the ↵Nisarg Patel1-1/+1
static build to run successfully (#15407)
2020-03-10libxpresent: Add some dependencies. (#15417)Toyohisa Kameyama1-4/+9
* libxpresent: Add some dependencies. * Change *proto dependency type from build to link.
2020-03-10r: Lower optimization level when using Fujitsu compiler@4.1.0. (#15418)Tomoki, Karatsu2-0/+73
2020-03-10cryptsetup: Add pkgconfig dependency (#15422)Dr. Christian Tacke1-0/+1
2020-03-10SCR: build with components (#14931)Elsa Gonsiorowski, PhD9-13/+92
* scr: add develop, legacy branches; version 2.0.0 squash! scr: add develop and legacy versions * filo: package for SCR component * spath: package for SCR component * axl: update for versions 0.3 and 0.2 * scr: build with components * spath: structure of +mpi if/else * :ok_hand: capitalization of ecp-veloc * scr: branches are always greater than any version
2020-03-10contrib-spiral: submit SPIRAL package recipe and HCOL package recipe … ↵broderickpt2-0/+90
(#15188) * contrib-spiral: submit SPIRAL package recipe and HCOL package recipe (extension package for SPIRAL) to spack * contrib-spiral: fix flake8 complaints for spiral & hcol * contrib-spiral: Revisions to package recipes to address comments * contrib-spiral: remove unecessary 'test' function * contrib-spiral: update hcol package to install in <prefix>/namespaces/packages/hcol * contrib-spiral: don't import os to hcol * contrib-spiral: tweak hcol package recipe
2020-03-10Parallel-netcdf: update package. (#15359)Sergey Kosukhin2-26/+127
* Parallel-netcdf: update package. * Add a temporary patch for version 'develop'. * Rename version 'develop' to 'master'. * Drop the patch for 'master'.
2020-03-10libfabric: added v1.9.1 (#15405)Seth R. Johnson1-2/+2
2020-03-10gromacs: remove simd variants (#13636)Christoph Junghans1-14/+34
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