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2019-08-14UnifyCR: update dependencies and build options (#12216)Cameron Stanavige1-6/+36
* UnifyCR: update dependencies and build options This adds some specifics about dependencies and conflicts and adds additional build options and variants. UnifyCR now also has limited fortran support. * Remove debug statements condition on Spack debug Change debug print statements to now be turned on when the -g cflag is found in the flags the user sets.
2019-08-14Package umoci dependency (#12422)Daryl W. Grunau1-0/+1
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * umoci depends on go-md2man
2019-08-14lammps: add version 20190807 (#12424)Christoph Junghans1-0/+1
2019-08-14New package: device-mapper (#12406)Daryl W. Grunau1-0/+47
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * new package: device-mapper * address comments by @hartzell * extraneous whitespace * capitalization * device-mapper -> lvm2 * unprovide device-mapper * address comments by @adamjstewart * address comments by @adamjstewart
2019-08-14r-rmutil: new package at 1.1.3 (#12417)Justin S1-0/+19
* r-rmutil: new package at 1.1.3 * r-rmutil: use cloud.r-project.org
2019-08-14New package: go-md2man (#12397)Daryl W. Grunau1-0/+45
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * new package: go-md2man * address comments by @adamjstewart
2019-08-14NCCL: fix build on older Linux systems (#12415)Adam J. Stewart2-1/+19
2019-08-14masurca: build on arm. (#12416)Toyohisa Kameyama2-0/+55
* remove -minline-all-stringops when target is arm. * change int3 to raise(SIGTRAP) when target is arm.
2019-08-14add new package: py-python-magic (#12409)Sinan1-0/+18
* add new package: py-python-magic * tidy up * Update var/spack/repos/builtin/packages/py-python-magic/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-13zstd: fix build linking error (#12413)Adam J. Stewart1-3/+7
2019-08-13starce: new version and build on ARM. (#12401)Toyohisa Kameyama1-1/+11
1. souce URL change to github. 2. Add version 5.1 and 5.2 3. enable build on ARM.
2019-08-13add charliecloud master branch; add dependencies (#12327)Jordan Ogas1-0/+13
* add master and dependencies * remove gcc and make * add variants, make doc and ch-grow dependencies optional * capitalize description sentence * move dependencies and variants below version block * fix typos
2019-08-13packages/umoci (#12346)Daryl W. Grunau1-0/+39
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * new package: umoci * Package -> MakefilePackage * add missing build phase * relax expand=False requirement
2019-08-13add new versions (#12393)Sinan1-0/+2
2019-08-13add new version (#12394)Sinan1-0/+1
2019-08-13add new version (#12395)Sinan1-0/+1
2019-08-13subread: build on ARM. (#12400)Toyohisa Kameyama1-0/+14
2019-08-13package/gromacs: simd optimizations autodetection for more versions (#12402)Ricardo Silva3-2/+14
* gromacs: fix simd detection for pre 2018 versions * pre 2018 the cmake file was named differently * fixed up post 2018 patch file which was non pretty * Trim patch
2019-08-13Add version 2.4.0 for cantera. (#12405)健美猞猁1-0/+1
2019-08-13patch opa-psm2 to build with spack wrappers (#12407)Gregory Lee2-1/+54
2019-08-13Fix package gpgme dependency (#12410)Daryl W. Grunau1-0/+1
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * build depends on gnupg which provides gpgsm binary
2019-08-13gcc: Add 9.2.0 (#12411)Michael Kuhn1-0/+1
2019-08-13CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL ↵Tiziano Müller3-16/+169
(#11418) * cp2k/sirius: add CUDA support * cp2k: fix building with MKL * sirius: make sure to link against Spacks blas/lapack/scalapack
2019-08-13new package: asagi: create package.py (#11931)brietzke1-0/+73
* Create package.py * applied reviewer suggestions * Update package.py * remove CamelCase from variant names * add comment on why fetching package via git * found typo in variant to cmake-argumentlist translation * rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition * Revert "rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition" This reverts commit 58e8cf7d93c5665f0b4b50228946857734716cef. * remove version-preference
2019-08-12Package/grass: fix iconv linking issue (#12165)Sinan1-0/+9
* fix iconv linking issue, package_grass fix linking iconv, add more comments
2019-08-12singularity: update version to 3.3.0 (#12295)Owen Solberg1-2/+8
* add checksum for singularity release 3.3.0 * update singularity doc URL URL at the lbl.gov domain has message saying: "This website is going away soon! Update your bookmarks!" * add note about build log file for post-install step * provide links to both 2.x and 3.x security docs * remove whitespace. Passing flake8 confirmed locally this time :) * add TODO comment for fakeroot support
2019-08-12New package: TexStudio (#12301)Jean-Paul Pelteret3-3/+86
* Poppler library: Add new versions * Poppler library: Allow building with QT4 * Poppler library: Install header files * Add patch to Poppler package * Add new package: TexStudio
2019-08-12blaze: converted to CMakePackage (#12357)Russell J. Hewett1-4/+4
The previous version does not properly install the required cmake configuration files for blaze-lib, so find_package does not work correctly. This patch converts the blaze-lib package to use CMakePackage, adds the required cmake dependency, and removes the install() member function, which is not working correctly and is no longer needed.
2019-08-12gtksourceview: new package (#12387)Geoffrey Oxberry1-0/+49
2019-08-12openblas: fix target detection for cross-compiling (#12390)Janne Blomqvist1-1/+1
In a review of a previous pull request ( https://github.com/spack/spack/pull/10713 ) it was mentioned that the proper way to figure out the target architecture is via spec.architecture.target. This patch fixes this for the openblas package. Signed-off-by: Janne Blomqvist <janne.blomqvist@aalto.fi>
2019-08-12openblas@0.3.7: New version (#12391)Janne Blomqvist1-0/+1
This adds OpenBLAS 0.3.7 (released 2019-08-11).
2019-08-12Apply xl patch for cce@9: to fix cmake. (#12392)Kelly (KT) Thompson1-0/+1
2019-08-12packages/skopeo (#12348)Daryl W. Grunau1-0/+43
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * new package: skopeo * address flake8 issues * address adamjstewart's comments * use the Executable class and undocumented 'str' feature for output * Package -> MakefilePackage * add missing build phase * patch -> edit phase
2019-08-11Update SWIG versions and add Fortran fork (#12185)Seth R. Johnson1-1/+17
* Add git repositories for SWIG and SWIG-Fortran * Fix typo in documentation * Move 'master' to top of SWIG version list
2019-08-11Fix py-matplotlib build with Intel compiler (#12144)Glenn Johnson1-5/+0
Not sure what happened between #5321 and now but the CC=CXX fix now prevents py-matplotlib from building with the Intel compiler. I verified with versions of py-matplotlib from 2.0.2 to 3.0.2 and intel-17.0.4 and 19.0.4 that py-matplotlib successfully builds with the Intel compiler without that code.
2019-08-11Use correct GCC installation when installing clang with GCC (#12381)Seth R. Johnson1-0/+4
2019-08-11new package: qwtpolar (#12382)Sinan1-0/+27
* create qwtpolar package * patch config files so that qwtpolar successfully builds * make flake8 happy
2019-08-11Add preCICE xSDK support (#12356)Frédéric Simonis1-13/+56
* Add preCICE xSDK support * Cleanup generation of cmake arguments * Generalize numpy include * Fix python spec Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Fix numpy spec Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-10Add NCCL 2.4.8-1 (#12362)Adam J. Stewart1-1/+2
2019-08-10Port py-poster to Python 3 (#12363)Adam J. Stewart2-0/+446
* Port py-poster to Python 3 * Forgot the patch
2019-08-10Add py-clipboard package (#12364)Adam J. Stewart1-0/+18
2019-08-10Add py-gee-asset-manager package (#12365)Adam J. Stewart1-0/+27
2019-08-10Add py-geeadd package (#12366)Adam J. Stewart1-0/+28
2019-08-10Add py-geeup package (#12367)Adam J. Stewart1-0/+34
2019-08-10Add py-google-api-core package (#12368)Adam J. Stewart1-0/+25
2019-08-10Add py-google-cloud-core package (#12369)Adam J. Stewart1-0/+19
2019-08-10Add py-google-cloud-storage package (#12370)Adam J. Stewart1-0/+21
2019-08-10Add py-google-resumable-media package (#12371)Adam J. Stewart1-0/+19
2019-08-10Add py-googleapis-common-protos package (#12372)Adam J. Stewart1-0/+18
2019-08-10Add py-oauth2client package (#12373)Adam J. Stewart1-0/+27
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