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2017-01-18OpenMPI: Update auto-detection of Verbs library location (#2124)Erik Schnetter1-0/+3
2017-01-18Massive conversion from Package to AutotoolsPackage (#2845)Adam J. Stewart312-2116/+376
* Massive conversion from Package to AutotoolsPackage * Forgot to convert p4est to AutotoolsPackage * Fix typo * Fix broken link in docs
2017-01-18gmsh: add 2.16 (#2857)Denis Davydov1-0/+1
2017-01-18octave: add 4.2.0; fix Blas/Lapack; use AutotoolsPackage (#2858)Denis Davydov1-11/+12
* octave: add 4.2.0; fix Blas/Lapack; use AutotoolsPackage * fix a bug
2017-01-18Convert 3 more new packages to PythonPackage (#2841)Adam J. Stewart3-17/+3
2017-01-18papi: Update to 5.5.1 (#2849)Erik Schnetter1-0/+1
2017-01-18hwloc: Update to 1.11.5 (#2851)Erik Schnetter1-0/+1
2017-01-18curl: update to 7.52.1 (#2852)Erik Schnetter1-0/+1
2017-01-18cmake: Update to 3.7.2 (#2853)Erik Schnetter1-0/+1
2017-01-18jemalloc: Update to 4.4.0 (#2850)Erik Schnetter1-0/+1
2017-01-17oce: add 0.18 and fix patching (#2844)Denis Davydov2-40/+10
* oce: add 0.18 and fix patching * oce: simplify the patch
2017-01-17p4est: switch to AutotoolsPackage (#2839)Denis Davydov1-10/+3
2017-01-16Add PythonPackage base classAdam J. Stewart164-997/+521
- Add a PythonPackage class with build system support. - Support build phases in PythonPackage - Add a custom sanity check for PythonPackages - Get rid of nolink dependencies in python packages - Update spack create to use new PythonPackage class - Port most of Python packages to new PythonPackage class - Conducted a massive install and activate of Python packages. - Fixed bugs introduced by install and activate. - Update API docs on PythonPackage
2017-01-16Set MPI environment variables to the compiler wrappers on Cray (#2762)Mario Melara1-7/+12
* Set MPI[lang] env var to compiler wrappers on cray Sets MPICC, MPICXX, MPIFC etc to point to the compiler wrappers on Cray systems. Some packages look for MPIs via environment variables - e.g adios * Use spec to check for Cray * os is no longer used.
2017-01-16Specify Python location in VisIt in a more uniform fashion. (#2803)Jon Rood1-2/+1
2017-01-16Fix issue with Mac OS version detection in m4 package. (#2835)Todd Gamblin1-3/+3
2017-01-16petsc: add 64bit variant (#2655)Denis Davydov6-23/+44
* petsc: add 64bit variant * hypre: add int64 variant * superlu-dist: add int64 variant * petsc: add int64 variant * metis: rename idx64 to int64 to make it consistent with other packages * mumps: rename idx64 to int64 to make it consistent with other packages * dealii: rename 64bit to int64 to make it consistent with other packages
2017-01-16isl: add latest version (#2834)Axel Huebl1-0/+1
added latest version of isl. Needed to get llvm/clang in the latest trunk to build via spack, but there are more versions available. what is the policy regarding those? Add what we need for now?
2017-01-15Updating BoxLib with the ability to build again. (#2813)Jon Rood1-16/+18
* Updating BoxLib with the ability to build again. * Using Spack MPI compilers directly. * Fixing typo. * Using tarball from github archive for boxlib.
2017-01-15Add Astra package (#2800)Adam J. Stewart1-0/+41
2017-01-15Added customization for make targets in 'build' and 'install' phases for ↵Adam J. Stewart4-36/+34
CMakePackage (#2742) * Added customization for make targets in 'build' and 'install' phases for CMakePackage * Use rst in build system docs so that Sphinx generates nice API docs * Allow AutotoolsPackages to be built in a different directory * Flake8 * Fix missing import * Allow configure to be located in different directory * Update espressopp to use build targets * Flake8 * Sphinx fix, lists must be a new paragraph * Back out change that allowed a configure script in a different directory than build_directory * Add missing deps, build in parallel * Missing space for rst list
2017-01-15New package: CppAD (#2832)Jean-Paul Pelteret1-0/+48
2017-01-15Remove cmake build dep from CMakePackages (#2684)Adam J. Stewart9-14/+1
2017-01-15Add list_url to cmake (#2714)Adam J. Stewart1-2/+4
2017-01-15Clang & Boost: No PCH (#2827)Axel Huebl1-0/+7
Although it hurts a little, officially pre-compiled headers in boost are only supported for gcc & msvc and the latest clang releases still fail to build boost with it. Therefore, I disabled building those to get boost build with clang 3.9.0 on an Ubuntu 14.04 (x86). Links to documentation and boost bug reports are inline, so people can later on check if they still apply. Seems just to be a bug in `Boost.Build` that tries to set `-o` with multiple output files.
2017-01-15Packages: Add CUDA8 (#2823)Axel Huebl1-0/+2
Adds the latest CUDA release, 8.0.44.
2017-01-15Add old version of PGI (#2784)Adam J. Stewart1-1/+5
2017-01-15Add latest version of PETSc (#2783)Adam J. Stewart1-0/+1
2017-01-15get_std_cmake_args delegates to CMakePackage._std_args fixes #2665 (#2805)Massimiliano Culpo1-3/+6
2017-01-15Features/octopus 6.0 (#2819)danielsjensen11-8/+53
* Added support for Octopus 6.0 and the optional libraries: metis, parmetis, netcdf, arpack-ng, and scalapack. * Fix PEP 8 line too long error. * Changed format syntax {} to {0} to support Python 2.6.
2017-01-15added psutil python package (#2812)Gregory Lee1-0/+43
2017-01-15Adding the py-ipdb package for more stable debugging with iPython. (#2824)Stephen McDowell1-0/+58
* Adding the py-ipdb package for more stable debugging with iPython. * Removing deprecated python support, adding missing dependencies. * Adding version checks for (i)python
2017-01-15Add the package py-sphinx-bootstrap-theme (#2825)Matthew Scott Krafczyk1-0/+41
2017-01-13boost: fixing boost-1.55.0 for gcc-5 (#2822)Andrey Prokopenko2-0/+54
boost-1.55.0 requires patching when compiling with gcc-5. See these threads: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=197594 https://svn.boost.org/trac/boost/ticket/10125 Fixes #2821.
2017-01-10Update the boost versions used by openspeedshop. Boost-1.60 to current ↵Jim Galarowicz6-16/+16
latest causes compile errors when building openspeedshop. (#2300) * Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file. * Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build. * Fix bad syntax in specifying the boost version range. * Update the version numbers for the krell institute components and tools: cbtf and openspeedshop. * Do not build glib for qt3, it is not needed and causes build problems at this time anyway.
2017-01-10openjpeg: fixes url (#2790)Massimiliano Culpo1-0/+4
2017-01-09Temporary workaround for R concretization bug (#2756)Adam J. Stewart1-2/+1
2017-01-09Added list_url to r-dt package (#1533)sknigh1-0/+1
2017-01-07Get Rid of nobuild, nolink, and alldeps (#2765)Elizabeth Fischer177-495/+499
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit. * This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways. * default deptype is still `('build', 'link')`
2017-01-07Various updates to the NCO package and dependencies (#2639)Adam J. Stewart9-100/+45
* Remove +mpi variant from NCO * Update NCO deps to AutotoolsPackage * Update the other NetCDF packages to AutotoolsPackage * ANTLR has a nolink deptype on java, don't worry about csharp * Remove restrictions from NCO package, fix homepage * Add version 4.6.3 of NCO * Missed AutotoolsPackage for NetCDF-CXX4 * NetCDF tests fail when run in parallel * Remove commented out dependency * Add documentation dependency
2017-01-07Unset PETSC_DIR during installation (#2768)Adam J. Stewart1-1/+11
* Set PETSC_DIR during installation * Move env var unsets to setup_environment * Fix unset var name and number of args
2017-01-07Added needed deps for bbcp (#2773)James Wynne III1-0/+3
2017-01-07Preliminary RPackage class (#2761)Adam J. Stewart170-1205/+176
2017-01-07Fix issues linking hDF5 1.8.14 and below on Ubuntu. (#2772)Todd Gamblin1-1/+15
2017-01-06add conduit 0.2.1 release (#2766)Cyrus Harrison1-1/+2
2017-01-06Add boost 1.63.0 (#2743)Bruno Turcksin1-0/+1
2017-01-06Merge pull request #2740 from jrood-nrel/jonroodGregory Lee1-1/+2
Renaming mkl to intel-mkl
2017-01-06various python package version and dependency updates (#2751)Gregory Lee7-3/+11
* various python package version and dependency updates * various python package version and dependency updates
2017-01-05espressopp: package for the ESPResSo++ software (#2602)Christoph Junghans1-0/+79
* espressopp: package for the ESPResSo++ software This commit adds a package for the ESPResSo++ simulation software. * Move Espressopp package to CMakePackage This commit moves Espressopp package to CMakePackage. Addresses some comments in the PR. * Remove run_tests and changed type of dependencies Addressed some comments from @adamjstewart. Removed global run_tests setting and removed type from many dependencies. Set type for py-mpi4py to 'nolink'. * Updated to last version and fix mpi4py dependency Added latest espressopp version and changed mpi4py (version) dependency for different espressopp versions. * Changed mpi4py version requirements for espressopp Changed py-mpi4py version requirements for espressopp@1.9.4 according to the package build requirements for that version.
2017-01-05Add dependencies and finish the py-tornado package.Matthew Krafczyk34-26/+1200
This adds the following packages: py-backports-shutil-get-terminal-size py-nbformat py-backports-ssl-match-hostname py-pathlib2 py-entrypoints py-pickleshare py-futures py-pip py-ipykernel py-prompt-toolkit py-ipython-genutils py-ptyprocess py-ipywidgets py-simplegeneric py-jupyter-client py-singledispatch py-jupyter-console py-terminado py-jupyter-core py-traitlets py-jupyter-notebook py-wcwidth py-monotonic py-widgetsnbextension py-nbconvert
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