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2020-04-17charliecloud: fix url (#16133)Jordan Ogas1-1/+1
2020-04-17LLVM libomptarget fixes (#16104)Nichols A. Romero1-5/+10
* Throw an error at spack install invocation instead of most of the way through the build process when cuda_arch is unspecified. * Clean-up of CMake booleans. No actual change. * Use CMake variables for hwloc and libelf installation directories and avoid injecting extra flags into CMAKE_CXX_FLAGS * Conflict should only exist for +cuda variant.
2020-04-17coreutils: add variant for g prefixTodd Gamblin1-1/+4
- [x] Add a `gprefix` variant to coreutils, so that the 'g' prefix on binaries is optional. - [x] Make un-prefixed binaries the default again
2020-04-17NCCL: add new version (#16130)Adam J. Stewart1-1/+4
2020-04-17oneDNN: add new version (#16129)Adam J. Stewart1-1/+2
2020-04-17singularity: new variants to enable non-suid and non-network builds (#16088)Andrew W Elble1-23/+32
Defaults are left as they are currently
2020-04-17New package: Biopandas python package (#16066)ilbiondo1-0/+24
* Biopandas python package * Update var/spack/repos/builtin/packages/py-biopandas/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-biopandas/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * remove scipy dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-17magma: added v2.5.3 (#16097)Stan Tomov1-1/+2
Also updated maintainer list
2020-04-17py-gcovr: added new package at v4.2 (#16100)Michael Kuhn1-0/+23
2020-04-17open-iscsi: added new package at v2.1.1 (#16113)darmac1-0/+32
2020-04-17aespipe: added new package at v2.4f (#16114)darmac1-0/+22
2020-04-17sz: run "make clean" after configure (#15759)Kai Germaschewski1-0/+3
At least the v2.0.2.0 tar ball contains compiled object files etc, which cause the build to fail on other architectures (ppc64le in particular), so this patch adds a `make clean` after configuring first.
2020-04-17asdcplib: added new package at v2.10.35 (#16118)darmac1-0/+23
2020-04-17libtree: added v1.1.2 (#16119)Harmen Stoppels1-0/+1
2020-04-16SourceForge: Mirror Mixin (#16112)Axel Huebl36-68/+98
* SourceForge: Mirror Mixin Add a mixing class for direct `CNAME`s to sourceforge mirrors. Since the main gateway servers are often down, this could reduce timeouts and fetch errors for sourceforge.net hosted software. * SourceForge: unspectacular mirror replacement add mirrors to all sourceforge packages with trivial download logic. tested fetch of latest version of each of these packages with various mirrors before committing. * SourceForge: xz the author homepage is chronocially overrun and this is the offical upload with many mirrors.
2020-04-16bugfix: fix emacs support on macOS (#16110)Todd Gamblin1-1/+1
- fix missing self.spec
2020-04-16macOS: Fix emacs Linking (#16106)Axel Huebl2-1/+9
* macOS: Fix emacs Linking Fix linking issue of emacs on macOS (clang and gcc). Applies the same work-around as conda-forge: https://github.com/conda-forge/emacs-feedstock/blob/b051f6c928d8b99fed3fabd9a8d67be993f94494/recipe/build.sh Homebrew avoids this by linking against the system ncurses lib: https://github.com/Homebrew/homebrew-core/blob/master/Formula/emacs.rb * ncurses: fix outdated variant comment this comment was build on the assumption that gnutls triggers a termlib dependency in emacs. that's not the case, ncurses itself depends on termlib when build with this feature.
2020-04-16libpng: github downloadAxel Huebl1-5/+4
libpng still has its sourceforge page but is actively been developed on github. since the sourceforge urls are too often down (as seen in my nightly CI/CD tests), just switch the download source to GitHub instead.
2020-04-16ncurses: forward termlib libs (#16101)Axel Huebl1-1/+5
These libs need to be forwarded, as in ncurses `pkg-config` file.
2020-04-16emacs: libxml2 deps (#16103)Axel Huebl1-0/+1
emacs depends on libxml2.
2020-04-16Add ncurses+termlib dependency to mesa (#16038)Glenn Johnson1-0/+2
Mesa links against libtinfo so needs to depend on ncurses. It also needs a little help finding the library directory so an LDFLAGS configure option is added.
2020-04-16New version xrootd-4.11.3 (#16092)Amjad Kotobi1-0/+1
2020-04-16singularity: updated maintainer list (#16093)Carlos Arango Gutierrez1-1/+1
2020-04-16openbabel: fix compilation errors (#16090)athanasio1-0/+6
- Disable maeparser as it is broken with CMake - Added missing dependencies
2020-04-16New package bonniepp added (#16091)Amjad Kotobi1-0/+21
2020-04-16Add new version 1.1.1 (#16087)Harmen Stoppels1-0/+1
2020-04-16New matlab versions (#16086)Antonio Arena1-4/+20
2020-04-16MPark.Variant: GCC 7.3.1 Conflict (#16081)Axel Huebl1-2/+11
* MPark.Variant: GCC 7.3.1 Conflict Due to an ICE in this specific patch-release of GCC, compile errors in downstream packages should be avoided with a clean conflict. * Fix superfluous spaces Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Fix typo Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-16dbcsr: expose all options, check openblas feats (#16034)Tiziano Müller1-7/+60
* dbcsr: expose all options, check openblas feats * dbcsr: use Ninja to build, ensure serialized tests * dbcsr: add myself as maintainer
2020-04-16Add Cubist (#16069)asmaahassan901-0/+32
* Add Cubist * enhance recipe * Not using OS module anymore * remove white space * Fix build shell * make Flake8 happy * use bash shell for build * Convert it To MakefilePackage as per peer-review
2020-04-16HAL: added new package at v2.1 (#16085)ilbiondo1-0/+102
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-15Add new package: zookeeper-benchmark (#16067)darmac1-0/+25
* Add new package: zookeeper-benchmark * refine zookeeper version * refine zookeeper version variant * remove unused variant
2020-04-15Neo4j (#16068)darmac1-0/+31
* Update var/spack/repos/builtin/packages/neo4j/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Add new package: neo4j * refine neo4j package * fix flake8 warning Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15update: memsurfer with python3 (#15636)Harsh Bhatia1-17/+19
* update: memsurfer with python3 * flake8 compliance * Update var/spack/repos/builtin/packages/memsurfer/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/memsurfer/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/memsurfer/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * removed build_type preferences at adamjstewart's suggestion * Added build/run dependency on python3.7 as suggested by adam stewart * more flake8 horror! Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15Upgrade MSTK versions (#16079)Rao Garimella1-0/+3
2020-04-15netcdf-cxx4: bugfix (#16080)Carson Woods1-0/+1
* Add new variants * Fix missing config_args variable
2020-04-15x.org packages: mirror mixinAxel Huebl200-400/+401
overhaul all x.org packages to use available mirrors.
2020-04-15Added maintainers (#16078)wspear1-0/+1
Co-authored-by: Wyatt Spear <wspear@cs.uoregon.edu>
2020-04-15Sonlib (#16060)ilbiondo1-0/+47
* sonLib package as required by the HAL toolkit * cleanup * Update var/spack/repos/builtin/packages/sonlib/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sonlib/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15New package: py-cmake-format (#16055)Kelly (KT) Thompson2-0/+21
* New package py-cmake-format * wrap long lines * Fix package description formatting.
2020-04-15Bump version of libtree (#16051)Harmen Stoppels1-1/+3
2020-04-15Tests: Mirror Mixin ClassesAxel Huebl7-0/+105
2020-04-15x.org: mirror mixinAxel Huebl1-2/+2
According to my nightly CI/CD tests, x.org is another large provider of software in common build chains that is often down. Added a hand-selected amount of mirrors that is well up-to-sync. Tested with `util-macros` that has a quite "recent" patch release. Other packages to follow in an individual PR.
2020-04-15Fix grcp@1.27.0: (#16052)Federico Ficarelli1-0/+5
Current default version was missing a dependency.
2020-04-15Add new package: mrbench (#16062)darmac1-0/+23
2020-04-15Add new package: kinesis (#16063)darmac1-0/+27
2020-04-15Added Laghos v3 to Proxy Apps v3 (#16070)Robert Pavel1-2/+3
Also fixed upper bound for v2 apps
2020-04-15julea: New package (#16071)Michael Kuhn1-0/+42
2020-04-15IQ-TREE: added new package at v1.6.12 (#16064)ilbiondo1-0/+51
2020-04-15Phylobayes MPI: added new package at v1.8b (#16065)ilbiondo1-0/+31
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