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2018-06-20glib: Update to 2.56.1 (#8523)Michael Kuhn1-0/+1
2018-06-20mitofates: needs perl at runtime (#8526)Levi Baber1-0/+1
2018-06-20Bump ZeroMQ from v4.2.2 to v4.2.5 (#8514)Chuck Atkins1-2/+5
This addresses some build issues with GCC 8 and the addition of the -Werror=stringop-truncation warning.
2018-06-19added albacore version 2.3.1 (#8513)Douglas Duckworth1-1/+2
2018-06-18Percept requires googletest to be a static library. (#8506)Jon Rood1-1/+1
2018-06-18samrai: update package for 3.12.0 and fix compilation bugs for earlier ↵twang151-10/+16
versions (#8501) * SAMRAI: remove dependency on boost for samrai 3.12.0 or later versions, but keep the older versions ccontinuing working with boost 1.64.0 or earlier. Also, the older versions cannot compile with boost 1.65.0 or above. (#8491) * SAMRAI: fix typos of comments and remove obsolete code.
2018-06-18Albany: Add Albany package. (#8332)Glen Hansen1-0/+121
* Add package.py to support the Albany GitHub project builds.
2018-06-18Updates to Nalu package(s) (#8492)Jon Rood2-9/+103
* Updating Nalu now that it can build with shared libraries and adding the new Nalu-Wind wind energy focused application. * Explicitly turn off TPLs for Nalu when not enabled.
2018-06-18Adding patch to Opencv (3.3.0-3.4.1) for fixing conflict between CUDA and ↵Samuel Fux2-0/+49
OpenCV dnn header file (#8502) * Adding patch for OpenCV to fix a conflict between an OpenCV and a CUDA header file * Added patch command to package.py file for OpenCV SPACK package. * Adding version range for patch. * shortening comment lines, since testsuite failed
2018-06-17Add new versions for TAU and PDT package (#8497)Pramod Kumbhar2-0/+6
2018-06-17Add changes to the Krell packages with version updates and ranges for the ↵Jim Galarowicz7-112/+99
latest release. (#8468) * Add changes to the Krell packages with version updates and ranges for the latest release. * Add reviewer requested changes. Remove preferred clauses and update the qt version for the cbtf-argonavis-gui@develop * Trigger integration/test restart
2018-06-16Trilinos needs parallel-netcdf as an explicit dependency to avoid ↵Jon Rood1-0/+1
concretization errors when netcdf is an external. (#8493)
2018-06-16superlu_dist: 'master' is branch - not tag (#8495)Satish Balay1-1/+1
==> Trying to clone git repository: https://github.com/xiaoyeli/superlu_dist at tag master Fetching tags only, you probably meant: git fetch --tags
2018-06-15SAMRAI: new versions, handle deprecation of boost in latest version. (#8494)Jon Rood1-2/+16
2018-06-15Fix GDAL Python bindings and add import tests (#8482)Adam J. Stewart1-4/+23
2018-06-15Add newer likwid versions 4.3.1 and 4.3.2 (#8488)Pramod Kumbhar1-0/+2
2018-06-15Package/geopm: Update to version 0.5.0 (#8487)Matthias Maiterth1-0/+1
2018-06-15[mfem] Add BLAS+LAPACK to the required dependencies of SuperLU_DIST. (#8485)Veselin Dobrev1-2/+4
2018-06-15openssl: add new version 1.0.2o (#8486)Todd Gamblin1-1/+2
2018-06-14 Patch trilinos for xlf when using clang (#8391)Dan FitzGerald1-0/+2
* Add patching for xlf when %clang. Changes are effective only when Fortran compiler is 'XL'. * Use the right version for trilinos when patching for seacas.
2018-06-14Use no mangling for all spack compiler definitions that use the XL (#8392)Dan FitzGerald1-1/+2
Fortran compiler. Clang can build with IBM XL Fortran compiler as well, so the name mangling shoud be avoided for that case as well.
2018-06-14Use the name of the Fortran compiler to determine what name mangling (#8393)Dan FitzGerald1-1/+1
setting to use, instead of the spack compiler. %clang can use multiple Fortran compilers with different options, so we need to know what compiler is used in order to provide the correct options.
2018-06-14A new package: megahit. (#8471)健美猞猁1-0/+44
2018-06-14neovim: add info for v0.3.0 (#8472)Matthias Wolf1-0/+1
2018-06-14oce: add 0.18.3 (#8477)Denis Davydov1-1/+2
2018-06-14netgen should depend on zlib (#8473)Praveen C1-0/+1
2018-06-14openblas: add 0.3.0 (#8478)Denis Davydov1-0/+1
2018-06-14petsc: add 3.9.1 and 3.9.2 (#8479)Denis Davydov1-0/+2
2018-06-14slepc: add 3.9.1 (#8480)Denis Davydov1-0/+1
2018-06-14superlu-dist: add 5.3.0 and 5.4.0 (#8481)Denis Davydov1-0/+2
2018-06-13boost package: patch dirent for pgi and boost 1.67 (#8313)Serban Maerean2-0/+14
2018-06-13xsdk: fix 'ChecksumError: md5 checksum failed' (#8440)Satish Balay1-1/+1
[error came up with the prior url pointing to a 'master' branch. so fixing with a switch to a fixed tarball]
2018-06-13xsdk: update xsdk@develop dependency on mfem@develop (#8462)Satish Balay1-1/+1
2018-06-13[mfem] new version: 3.4 (#8453)Veselin Dobrev4-9/+142
* Add new version (3.4.0) with new variant (pumi). * Fix an issue: skip the tests in examples/pumi as they require files that are not included in the mfem distribution/repository. * Use patches to fix the testing issues with PUMI and PETSc v3.9. * Use the new bit.ly short link for v3.4.
2018-06-13Add the ability to build the dyninst master branch under the develop version ↵Jim Galarowicz3-8/+34
name. (#8455) * Add the ability to build the dyninst master branch under the develop version name. Fix elfutils and libdwarf to work with the various dyninst versions and vice-versa. * Add reviewer suggested change to dyninst package file. Remove colon in spec.satisfies clause. * Add reviewer suggested change to dyninst package file. Remove duplicate lines. * Add reviewer suggested change to dyninst package file. Encompass all versions under 10.0 with respect to using libdwarf in the build.
2018-06-13new package: ASPECT (#8459)Timo Heister1-0/+56
* add ASPECT package * add maintainer * simplify
2018-06-13ADIOS: Revert Patch (#8463)Axel Huebl2-19/+0
That patch is only a partial solution and does not solve the issue. Revert is, unnecessary.
2018-06-13Add: MPILander (#8464)Axel Huebl1-0/+64
MPILander - There can only be one (MPI process)! The final MPI implementation.
2018-06-13gplates: new package (#8336)Michael Kuhn3-55/+148
This also adds an older 1.x version to gdal that is required by gplates.
2018-06-13openfoam-com: added submodule flag to git fetch (#8446)Simone Bnà1-1/+1
2018-06-13blasr-libcpp: new package (#8366)Miles Perry1-0/+73
* blasr-libcpp: new package * blasr-libcpp: added version #, and moved make into build phase. * blasr-libcpp: added prefix.include to PBBAM_INC, added version URL * blasr-libcpp: indented comments, made list of configure_args, and added prefix.include * blasr-libcpp: added setup_dependent_environment from blasr * blasr-libcpp: fixed syntax for configure_args * blasr-libcpp: fixed configure_args syntax * blasr-libcpp: fixed syntax * blasr-libcpp: syntaxtest * blasr-libcpp: fixed def build error * blasr-libcpp: edited dependent environment to move after install phase * blasr-libcpp: rearranged build and install * blasr-libcpp: added configure_args * blasr-libcpp: fixed syntax error * blasr-libcpp: removed .spec from INC and LIB alignment, pbdata, hdf * blasr-libcpp: seperated configure args * blasr-libcpp: edited configure and setup_dependent steps * blasr-libcpp: added CPATH arg * blasr-libcpp: C_INCLUDE_PATH * blasr-libcpp: fixed install issues resulting from PacBio change
2018-06-13trilinos: use 'branch' option to specify branches such as develop/master ↵Satish Balay1-2/+2
[they are not tags] (#8448) Fixes the following problem: ==> Installing trilinos ==> Warning: Suspicious requests to set or unset 'LD_LIBRARY_PATH' found ==> Warning: env.unset('LD_LIBRARY_PATH') at /home/balay/spack.new/lib/spack/spack/build_environment.py:269 ==> Warning: ---> env.set('%s' % key, value) at /home/balay/spack.new/lib/spack/spack/build_environment.py:292 ==> Trying to clone git repository: https://github.com/trilinos/Trilinos.git at tag develop Fetching tags only, you probably meant: git fetch --tags error: pathspec 'develop' did not match any file(s) known to git. ==> Fetching from [git] https://github.com/trilinos/Trilinos.git failed. ==> Error: FetchError: All fetchers failed for trilinos-develop-tgkpnctp6nn4imoizxlw4ymqyztcie4n
2018-06-13new package: dealii-parameter-gui (#8456)Timo Heister1-0/+40
2018-06-13petsc: 'master' is a branch - not a tag - so fix it accordingly. (#8457)Satish Balay1-1/+1
2018-06-13[GLVis] Add new version: 3.4 (#8454)Veselin Dobrev1-5/+13
* [glvis] Add new version, 3.4; update all checksums to be SHA-256. * [GLVis] Use the new bit.ly short link for v3.4.
2018-06-12new package: pdftk (#8166)Elizabeth Fischer2-0/+171
2018-06-12Package: ISAAC 1.4.0 (#8447)Axel Huebl2-2/+4
2018-06-12superlu_dist: fix 'spack install superlu-dist@develop' (#8442)Satish Balay1-0/+1
Latest superlu_dist sources now use INCLUDEDIR. This change should not affect older superlu_dist version builds
2018-06-11Fixed compilation of quantum-espresso (#8439)Massimiliano Culpo1-2/+20
The patch to select ELPA API needs to be applied to version 6.2.0 too. The link line of hdf5 is computed incorrectly from the configuration part of the build-system. To fix this the relevant file (make.inc) is patched.
2018-06-11boost: fix cxxstd=default (#8438)Denis Davydov1-1/+3
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