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2022-09-19NCCL should not be dependent on ROCm builds since RCCL is used instead. (#32461)rsanthanam-amd1-3/+3
Allow the nccl flag to be specified even for ROCm builds so that NCCL kernels are included in the build. In this case the NCCL kernels will use RCCL as the backend implementation.
2022-09-19Adding intel-oneapi-itac package (#32658)Stephen Sachs1-0/+42
* Adding intel-oneapi-itac package * Make black happy * add rscohn2 as maintainer * black prefers double quotes Co-authored-by: Stephen Sachs <stesachs@amazon.com> Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-09-19Ginkgo: improve smoke testing (#32647)Terry Cojean1-14/+52
* Ginkgo: improve smoke testing * Fix style issues * Pass `self.compiler.{cc,cxx}` to the smoke tests
2022-09-19patch etsf-io tests (#32666)Ashwin Kumar3-0/+59
(Patches from meisam.tabriz@mpcdf.mpg.de and smoke tests from @fangohr)
2022-09-19root: determine_variants cxxstd=20 support (#32673)Wouter Deconinck1-0/+2
This is somewhat ahead of reality, but once/when external ROOT installs with cxxstd=20 are common, we will need this to pick up the correct variant.
2022-09-19fasttree: updating to 2.1.11 (#32683)snehring1-0/+7
2022-09-19py-sip: add v6.6.2 (#32695)Adam J. Stewart1-2/+7
* py-sip: add v6.6.2 * Fix python deptype
2022-09-19edm4hep: allow variant cxxstd 20, sync with podio (#32698)Wouter Deconinck1-1/+5
Now that `podio` can support `cxxstd` variants 17 and 20, we can allow `edm4hep` to use `cxxstd=20` as well, but must ensure that `edm4hep` uses the same `cxxstd` variant as `podio`. Solution as in `celeritas`.
2022-09-19geant4-vmc: add version 6-1-p1 (#32704)Laurent Aphecetche1-0/+1
2022-09-19Fix benchmark recipe after branch name was changed (#32708)iarspider1-1/+1
2022-09-19geant4: new bugfix version 11.0.3 (#32700)Wouter Deconinck1-0/+1
Geant4 has a new bugfix version 11.0 patch-03, [release notes](https://geant4-data.web.cern.ch/ReleaseNotes/Patch.11.0-3.txt). No build system changes.
2022-09-19py-neurora: add 1.1.6.8 (#32684)Manuela Kuhn1-0/+1
2022-09-19py-pydicom: add 2.3.0 (#32681)Manuela Kuhn1-0/+1
2022-09-18Attempt at patching phist find mpi heuristic (#32688)John W. Parent1-1/+1
for updated phist version
2022-09-17Add skip_import to PythonPackage and use it in py-nilearn (#32664)Manuela Kuhn1-35/+28
* Add skip_import to PythonPackage and use it in py-nilearn * Fix dependencies
2022-09-17xyce: Change preferred to last numeric version (#32679)Paul Kuberry1-2/+3
- Also handles new constraints on Trilinos version
2022-09-16[intel-oneapi-compilers] fix CC/CXX (#32677)Robert Cohn1-4/+4
2022-09-15adding butterflypack 2.2.0 (#32670)liuyangzhuan1-1/+2
2022-09-15New package: xrdcl-record (#32663)iarspider1-0/+20
* New package: xrdcl-record * Flake-8
2022-09-15Fenicsx v0.5.0 (#32611)Matthew Archer7-7/+45
* initial commit of 0.5.0 changes * updated dependencies * updated ffcx sha * comment style * llvm compilers * introduce pugixml dependency for 0.5.0: * update compilers to support C++20 features * style fixes * xtensor and xtl not needed for basix 0.5.0 and above * Skip to Basix 0.5.1 The 0.5.1 release removes the C++ build dependency on Python that sneaked into the 0.5.0 build system. * Improve depends on version ranges * More dependency version improvements Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk> Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2022-09-15added missing dependency for py-msgpack that breaks neovim (#32631)Robert Underwood1-1/+2
* added missing dependency for py-msgpack that breaks neovim * Update var/spack/repos/builtin/packages/py-pynvim/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Robert Underwood <runderwood@anl.gov> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-15FPLO: add new package (#32580)Glenn Johnson6-0/+373
2022-09-14[py-pip] fix setup_dependent_package in py-pip (#32632)Matthieu Dorier1-1/+1
2022-09-14libcatalyst: use git instead of fixed urls (#32642)Vicente Bolea1-8/+2
The issue is that we are not not able to install (Fetch URL error) any version of catalyst other than the specified in the spack package.py. This very version is accessible only because it is cached by Spack. The real URL does not exist anymore, I believe the reason is that there used to be a tag in catalyst that does not exist anymore.
2022-09-14llvm: fix detection of LLDB_PYTHON_EXE_RELATIVE_PATH (#32584)Sergey Kosukhin2-0/+35
2022-09-14py-awkward: allow newer, fixed rapidjson versions (#32650)Valentin Volkl1-1/+1
Rapidjson was constrained due to a bug (see https://github.com/spack/spack/pull/29889) , but newer (although untagged) versions of rapidjson have since been added to spack (https://github.com/spack/spack/pull/29869). Tested the build of py-awkward with the latest, works fine.
2022-09-14Add checksum for yoda 1.9.6 (#32648)iarspider1-0/+1
2022-09-14[py-pyprecice] add v2.5.0.0 and v2.5.0.1 and update checksum of v2.4.0.0 ↵Ishaan Desai1-11/+18
(#32551) * Update versions 2.5.0.0 and 2.5.0.1 * Applying review changes * Updating incorrect checksum for v2.4.0.0 * Add for loop to define depends_on for preCICE versions and bindings versions * Formatting * Missing comma
2022-09-14compadre: add v1.5.0, v1.4.1 (#32609)Paul Kuberry1-6/+14
2022-09-14Add hdf5-vol-async v1.3 (#32634)Houjun Tang1-0/+1
2022-09-14py-pytorch-lightning: add v1.7.6 (#32644)Adam J. Stewart1-0/+1
2022-09-14py-tokenize-rt: add missing setuptools dependency (#32639)Adam J. Stewart1-0/+1
2022-09-14phist: add v1.9.5 (#32621)Jonas Thies2-17/+9
2022-09-13berkeley-db: Correct TLS auto-detection (#32592)Erik Schnetter2-0/+29
2022-09-13json-glib: add pkgconfig dependency (#32638)Adam J. Stewart1-0/+1
2022-09-13graphite2: fix build on macOS (#32636)Adam J. Stewart1-0/+7
2022-09-13New package: py-qiskit-nature (#32628)João Seródio1-0/+29
2022-09-13add ability to disable werror for rocksdb (#32618)Robert Underwood1-0/+4
* add ability to disable werror for rocksdb * Update var/spack/repos/builtin/packages/rocksdb/package.py Co-authored-by: Robert Underwood <runderwood@anl.gov> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-13packages/phist: new version 1.10 (#32581)Jonas Thies1-0/+9
* packages/phist: new version 1.10 * fix (and narrow) conflicts, thanks @glennpj
2022-09-13Add libraqm package; enable in py-pillow (#32619)Ondřej Čertík2-1/+25
* Add libraqm package * py-pillow: Add optional raqm dependency/variant * Use sha256 * Use " instead of ' * Use more explicit import * Only add raqm from @8.4.0: * Make the docstring shorter to satisfy flake * Add conflict, silence warning, adjust version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-13Parsec: v3.0.2209 (#32617)Aurelien Bouteiller1-0/+5
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu> Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2022-09-13gromacs: add 2022.3 (#32624)Carlos Bederián1-0/+1
2022-09-13fix depends on versioning (#32626)Chris White1-8/+8
2022-09-13Windows rpath support (#31930)John W. Parent1-6/+6
Add a post-install step which runs (only) on Windows to modify an install prefix, adding symlinks to all dependency libraries. Windows does not have the same concept of RPATHs as Linux, but when resolving symbols will check the local directory for dependency libraries; by placing a symlink to each dependency library in the directory with the library that needs it, the package can then use all Spack-built dependencies. Note: * This collects dependency libraries based on Package.rpath, which includes only direct link dependencies * There is no examination of libraries to check what dependencies they require, so all libraries of dependencies are symlinked into any directory of the package which contains libraries
2022-09-13unifyfs & gotcha: new releases (#32625)Cameron Stanavige2-20/+26
UnifyFS: - Add 1.0 release - Deprecate older, unsupported versions - Set fortran variant to true by default - Update gotcha and mochi-margo dependency versions for unifyfs@1.0 and unifyfs@develop - Add conflict of unifyfs with libfabric 1.13.* versions - Update configure_args to use helper functions GOTCHA: Hasn't been under active development for a couple years but the develop branch has some fixes UnifyFS uses. To avoid having UnifyFS v1.0 depend on a develop branch of a dependency, this creates a new release in the Gotcha Spack package based on the most recent commit of the develop branch.
2022-09-13rocsparse: add spack build test (#31529)Cory Bloor5-7/+364
* rocsparse: add spack build test * Fix Navi 1x patch for ROCm 5.2 * Remove bench variant and other cleanup * Fix style
2022-09-13charliecloud: deprecate old versions (#32462)Jordan Ogas1-22/+64
* tidy, deprecate old versions * bump python * begrudgingly apply less readable style * adjust comment spacing * apply ghastly multiline function arguments
2022-09-13Added 2.6.0 version to NVSHMEM package. Added new variant for GPU (#32622)Brian Van Essen1-0/+10
initiated support experimental feature.
2022-09-13Hyperqueue package (#32475)Henrik Nortamo1-0/+35
* Adds hyperqueue package * Adds maintainers * Adds missing dockstring * Bump year for Copyright Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * Fixes checksum, selects preferred version Don't use a release candidate as the default version * Switch maintainer to one of the developers for HQ * Update package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-13GDAL: add v3.5.2 (#32614)Adam J. Stewart1-0/+1