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2022-03-31libunwind: restore version 1.6.2 to preferred (#29796)Mark W. Krentel1-5/+6
Version 1.6.2 is now available from mirror.spack.io, so this avoids problems fetching from savannah.nongnu.org.
2022-03-30giflib: add libs property (#29604)Glenn Johnson1-0/+5
2022-03-31gpi-space: fix boost dependency (#29787)Max Zeyen1-1/+1
2022-03-30New package: py-pypinyin (#29547)Jen Herting1-0/+21
* [py-pypinyin] created template * [py-pypinyin] - added homepage - added dependencies - removed some fixmes * [py-pypinyin] added description
2022-03-31amr-wind: does not require hypre with unified memory any longer. (#29799)Jon Rood1-1/+1
2022-03-31pika: add conflict with gcc versions strictly inferior to 9 (#29798)Auriane R1-2/+5
2022-03-31ParaView: add v5.10.1 (#29516)Vicente Bolea1-1/+2
2022-03-30exciting: fix bug on aarch64 (#29762)Qian Jianhua1-2/+2
2022-03-30Bugfix: Kokkos stand alone test (#29403)Richarda Butler1-15/+46
* Use the cmake in the user's path * Use test_suite cache * Clean up the code
2022-03-30spack ci: filter untouched pkgs from PR pipelines (#29697)Scott Wittenburg1-1/+1
We've previously generated CI pipelines for PRs, and they rebuild any packages that don't have a binary in an existing build cache. The assumption we were making was that ALL prior merged builds would be in cache, but due to the way we do security in the pipeline, they aren't. `develop` pipelines can take a while to catch up with the latest PRs, and while it does that, there may be a bunch of redundant builds on PRs that duplicate things being rebuilt on `develop`. Until we can do better caching of PR builds, we'll have this problem. We can do better in PRs, though, by *only* rebuilding things in the CI environment that are actually touched by the PR. This change computes exactly what packages are changed by a PR branch and *only* includes those packages' dependents and dependencies in the generated pipeline. Other as-yet unbuilt packages are pruned from CI for the PR. For `develop` pipelines, we still want to build everything to ensure that the stack works, and to ensure that `develop` catches up with PRs. This is especially true since we do not do rebuilds for *every* commit on `develop` -- just the most recent one after each `develop` pipeline finishes. Since we skip around, we may end up missing builds unless we ensure that we rebuild everything. We differentiate between `develop` and PR pipelines in `.gitlab-ci.yml` by setting `SPACK_PRUNE_UNTOUCHED` for PRs. `develop` will still have the old behavior. - [x] Add `SPACK_PRUNE_UNTOUCHED` variable to `spack ci` - [x] Refactor `spack pkg` command by moving historical package checking logic to `spack.repo` - [x] Implement pruning logic in `spack ci` to remove untouched packages - [x] add tests
2022-03-30py-pysimdjson: Add new package (#29767)haralmha1-0/+22
* py-pysimdjson: Add new package * Cleanup * Fix python requirement Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-30libtiff: add missing dependencies (#29605)Glenn Johnson1-6/+14
* libtiff: add missing dependencies - gl - glu - freeglut * Make X/GL only for Darwin/Mac * Catch the force_autoreconf property * add platform=darwin to the autotools deps as well * Update var/spack/repos/builtin/packages/libtiff/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-30cmake: add v3.23.0 (#29790)Harmen Stoppels1-0/+1
2022-03-30keepassxc: adding version 2.6.6 and major release 2.7.0 (#29676)Olivier Cessenat1-0/+3
2022-03-30krb5: add v1.19.3, fix build on clang13 (#29683)Valentin Volkl1-0/+10
Fixes the following error on %clang@13.0.1 >> 2413 bison: error while loading shared libraries: libtextstyle.so.0: cannot open shared object file: No such file or directory >> 2414 make[2]: *** [<builtin>: getdate.c] Error 127
2022-03-30goma: add v7.0.4 (#29685)Weston Ortiz1-0/+1
2022-03-30veccore: drop useless variants and switch to new repository location (#29678)Seth R. Johnson2-35/+22
VecCore's new home is on github (hashes have changed even though commit IDs and presumably contents are the same), and it does not need any configuration options. See discussion at https://gitlab.cern.ch/VecGeom/VecCore/-/merge_requests/1 .
2022-03-30kallisto: add v0.48.0 (#29689)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-03-30freebayes: add v1.3.6 (#29692)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-03-30gcc: add missing dependencies (#29671)Tom Scogland1-0/+9
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-30simmetrix-simmodsuite: add opencascade variant and version 16.0-220312 (#29759)Cameron Smith1-0/+39
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-03-30ftxui: add new package (#29724)Matthieu Dorier1-0/+16
2022-03-30py-m2r: constrain py-mistune to version 0.8.1 (#29608)Glenn Johnson1-1/+1
* py-m2r: constrain py-mistune to version 0.8.1 * Remove lower half of py-mistune version constraint
2022-03-30cgns: add maintainer (#29775)Greg Sjaardema1-0/+1
2022-03-30neko: add new package (#28791)Niclas Jansson1-0/+42
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-03-30proj: add v8.2.1, v8.2.0 and v8.1.1 (#29774)Thomas Dickerson1-0/+3
Version 9.0.0 drops Autotools support in favor of CMake and will presumably require larger changes to package.py
2022-03-30Flecsi: updated version semantic (#29780)Robert Pavel1-8/+13
Updated flecsi spackage to better support changes in control variables in post 2.1.0 releases while also making legacy versions clearer as to what is a tagged release and what is a rolling-ish development branch
2022-03-30Add patch to fix compilation of boost with compilers not in path (#29718)Mikael Simberg2-0/+16
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-03-29r-quantreg: add v5.88 (#29621)Glenn Johnson1-0/+1
2022-03-29py-reportlab: add missing dependency on freetype (#29611)Glenn Johnson1-0/+5
* py-reportlab: add missing dependency on freetype * Add missing dependencies * Update var/spack/repos/builtin/packages/py-reportlab/package.py Use pil virtual. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-29Trilinos: add linker flags to improve behavior (#29492)Seth R. Johnson1-3/+12
2022-03-29Support DASK backend in XARRAY. (#29726)Nichols A. Romero1-0/+2
* Support DASK backend in XARRAY. * Create XARRAY parallel variant with correct py-dask dependency.
2022-03-29Update cgns for new release (#29709)MicK71-1/+2
Add CGNS 4.3.0 version
2022-03-29ExaGO: add v1.4.0 and v1.4.1 (#29712)Asher Mancinelli2-29/+85
* ExaGO: Handling of cuda architectures and amdgpu targets changed to effectively handle multiple targets. See #28441. * Add ROCm support to ExaGO and update ROCm support in HiOp * ExaGO+rocm requires HiOp+rocm * Newer versions of CMake may set HIP_CLANG_INCLUDE_PATH incorrectly: add comments to the ExaGO/HiOp packages explaining how to address this problem if it occurs.
2022-03-29cgns: add v4.3.0 (#29773)Greg Sjaardema1-0/+1
2022-03-29mochi-margo: add v0.9.8 (#29771)Matthieu Dorier1-0/+1
2022-03-29SUNDIALS: refactor CMake recipe (#29585)Seth R. Johnson1-181/+95
- Use define/define_from_variant - Remove unused "fortran_flags" - Fix CUDA architectures when using multiple (needs semicolon not comma separators) - Add `when=` variant restrictions to simplify logic
2022-03-28cuda: add 11.6.2 (#29756)Carlos Bederián1-0/+4
2022-03-28Convert git-over-ssh package URLs to canonical format (#29754)Thomas Dickerson3-3/+3
Use canonical SSH urls for git-over-ssh package urls. See also: discussion on #29706, #29749, and https://forum.gitlab.com/t/provided-ssh-url-is-in-the-wrong-format/14320
2022-03-28spiner: fix +cuda (#29758)Richard Berger1-2/+2
2022-03-28New package: spiner (#29719)Richard Berger1-0/+77
* New package: spiner * Update dependencies for spiner package * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Remove versions that can't be installed and use ports-of-call@1.1.0 Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-28survey package: add versions 1.0.2/1.0.3; add tls model variant (#29375)Jim Galarowicz1-3/+16
2022-03-28ports-of-call: new version 1.1.0 (#29723)Richard Berger1-2/+2
Version 1.0.0 was uninstallable.
2022-03-28batchedblas: new package (#29028)FJ-NaokiMatsumura2-0/+52
2022-03-28gpi-space: add v22.03 (#29736)Max Zeyen1-0/+1
2022-03-28Adding NVIDIA HPC SDK 22.3 (#29737)Filippo Spiga1-0/+4
Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2022-03-28julia: add patch reverting llvm rpath changes (#29731)Harmen Stoppels2-0/+35
2022-03-28julia 1.6/1.7: constrain libgit2, libssh2 (#29728)Harmen Stoppels1-4/+8
2022-03-27py-torch: fix to build with fujitsu-ssl2 (#29283)FJ-NaokiMatsumura8-0/+544
* py-torch: fix build with fujitsu-ssl2 * fix to use fujitsu-ssl2 in py-torch v1.5.0 to v1.11.0 * fix to use fujitsu-ssl2 in py-torch v1.2.0 to v1.11.0 * Delete fj-ssl2.patch * renamed the patches * Rename fj-ssl2.1.5.patch to fj-ssl2_1.5.patch * Delete fj-ssl2_1.5.patch
2022-03-27mochi-thallium: new package (#29722)Matthieu Dorier1-0/+60