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2023-07-26Update package.py for new hypre release 2.29.0 (#38537)Rob Falgout2-10/+8
2023-07-26Implement `odgi` package (#39078)Gurkirat Singh1-0/+48
* feature (packages): implement `odgi` package This commit re-implements odgi package (superseded by #38741) * fix (packages): remove redundant `requires()` from odgi package This commit removes redundant use of `requires()` for gcc version in the `odgi` package
2023-07-26libelf: fix build with clang16+ (#38915)Aiden Grossman1-0/+7
libelf fails to build with clang16+ due to Wimplicit-int and Wimplicit-function-declarations becoming errors by default. This breaks the configuration stage, so no build takes place. This patch fixes this by passing -Wno-error=implicit-int and -Wno-error=implicit-function-declarations as cflags.
2023-07-26llvm: remove build type comment (#39087)Aiden Grossman1-4/+0
The message is now outdated after https://github.com/spack/spack/pull/36679 which could lead to some confusion.
2023-07-26gcoff: fix build with clang 16+ (#38914)Aiden Grossman1-0/+6
gcoff uses the register keyword in a couple different places which causes errors when building with c++17, which is the default in clang 16. This patch adds the -Wno-register flag to ignore these errors when when building with clang 16.
2023-07-26unzip: fix build with clang16+ (#38899)Aiden Grossman2-3/+52
Clang 16's change to erroring out by default on implicit function declarations and implicit integers causes the build script for unzip to break. Since this project hasn't had a release since 2010, we need to patch it downstream/pass additional flags to get the build to succeed.
2023-07-26hdf: fix build with clang16+ (#38888)Aiden Grossman1-4/+8
With the release of clang 16, clang now treats implicit function declarations and implicit integers as errors rather than warnings, causing the build to fail. This patch adds flags to prevent build failures.
2023-07-26Add newer versions of mimalloc (#39091)Mikael Simberg1-0/+10
2023-07-26mpich: add 4.1.2 release (#39084)Ken Raffenetti1-0/+1
2023-07-25pmix: add 4.2.4 and disable munge explicitly (#39018)Michael Kuhn1-1/+2
2023-07-25Update pastix v6.3.0 (#39076)fpruvost1-0/+1
2023-07-25Add w3emc 2.10.0 and update variants, run env logic (#39075)Alex Richert1-1/+14
2023-07-24Kokkos: add release 4.1.0 (#38641)Bruno Turcksin1-0/+4
* Add Kokkos 4.1.0 release * Add -fp-model=precise flag when using SYCL * Fix sycl flag Co-authored-by: Robert Cohn <rscohn2@gmail.com> --------- Co-authored-by: Robert Cohn <rscohn2@gmail.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-24xsdk: remove version 0.6.0, also remove corresponding xsdk-examples@0.2.0 ↵Satish Balay2-61/+6
(#39000)
2023-07-24netcdf-fortran: add version 4.6.1 and fix the checks (#39043)Sergey Kosukhin1-3/+2
* netcdf-fortran: add version 4.6.1 * netcdf-fortran: fix the 'check' method
2023-07-24bfs: add new package (#39057)Alec Scott1-0/+25
* bfs: add new package * Remove redundant set to PREFIX during build
2023-07-24quickjs: make Makefile use correct compiler (#39060)Matthieu Dorier1-0/+9
* quickjs: make Makefile use correct compiler * added lto variant and better handling of compilers * quickjs: correct style * quickjs: correct style for flake8
2023-07-24openmpi: add openshmem variant (#39067)ajpowelsnl1-0/+4
2023-07-24mgis: add new variant for static libraries (#38917)Briffou1-0/+4
Co-authored-by: Thomas Briffard <thomas.briffard@michelin.com>
2023-07-24mvapich2@2.3.7-1: add torque patch (#39027)eugeneswalker2-0/+30
2023-07-24add conflict for +parmetis when ~mpi (#39050)Chris White1-0/+2
2023-07-22mvapich2: Add patch to avoid segmentation fault in `MPIR_Attr_delete_list` ↵Mosè Giordano2-0/+22
(#39058)
2023-07-22mtn: add mtn package (#39053)Adam Fidel1-0/+31
2023-07-22Fix pkgconfig dependencies (#39059)Michael Kuhn2-2/+2
pkg-config and pkgconf are providers.
2023-07-22py-jaxlib: add conflict for missing cuda cuda_arch value (#39054)Christopher Christofi1-0/+7
* py-jaxlib: add conflict for missing cuda cuda_arch specification * Update var/spack/repos/builtin/packages/py-jaxlib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-jaxlib: conflict missing cuda_arch value when with cuda * Update var/spack/repos/builtin/packages/py-jaxlib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-22openfoam: add versions 2306, 2212_230612 (patch), 2212 (#38694)Mark Olesen1-0/+5
* openfoam: add versions 2306, 2212_230612 (patch), 2212 * Fix syntax error --------- Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-21py-sqlalchemy: add 2.0.19 (#38951)Manuela Kuhn1-8/+12
* py-sqlalchemy: add 2.0.19 * [@spackbot] updating style on behalf of manuelakuhn * Add py-cython and py-greenlet and fix dependency type * Fix typo
2023-07-21Update Truchas (#39026)Zach Jibben5-5/+7
2023-07-21legion: Update Python dependencies. Fix variant requirements. Remove TLS. ↵Elliott Slaughter1-13/+7
(#39003) * legion: Missing Python dependency. Fix variant dependencies. Remove TLS. * Update Python version bound and add NumPy dependency. * Update requires syntax.
2023-07-21quickjs: add quickjs package (#39041)Matthieu Dorier1-0/+31
* added quickjs package * edited style of quickjs package
2023-07-21py-isort: add 5.12.0 and fix build of 5.10.1 (#39033)Manuela Kuhn1-4/+8
2023-07-21qt-*: update for 6.5.2 (#39038)Martin Aumüller5-0/+6
2023-07-21julia: Update hashes of github-generated patch files (#39034)Mosè Giordano1-3/+3
2023-07-20py-mpi4py: does not yet support cython 3 (#38996)Adam J. Stewart1-0/+3
2023-07-20proj: fix build of v7 with GCC 13 & add 9.2.1 (#39004)Martin Aumüller1-0/+7
* proj: fix building with GCC 13 apply upstream patch from 7.2 branch * proj: checksum 9.2.1 * proj: fix sha256 of patch thank you, @adamjstewart
2023-07-20Add recipe for py-plotext (#39023)mschouler1-0/+20
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-07-20Add Quo-Vadis package. (#38998)Samuel K. Gutiérrez1-0/+55
Signed-off-by: Samuel K. Gutierrez <samuel@lanl.gov>
2023-07-20nag: update the versioning scheme (#35457)Sergey Kosukhin1-5/+16
* nag: append build number to the version * nag: add version 7.1.7125 * nag: deprecate unavailable versions
2023-07-20sensei: add version 4.1.0 (#38959)willdunklin1-0/+1
2023-07-20serf: add 1.3.10 (#38847)Manuela Kuhn1-1/+2
2023-07-20update luajit and fix link on neovim to allow luajit to work on linux ↵Tom Scogland2-2/+5
aarch64 (#38865)
2023-07-20Add boost variant to henson and require it for aarch64 (#38916)Dmitriy1-0/+5
2023-07-20Update GNINA and libmolgrid (#38978)Rocco Meli2-2/+6
* pin protobuf * explicitly select python interpreter * remove python pin
2023-07-20botan: checksum 3.1.0 and 3.1.1 (#39006)Martin Aumüller1-0/+2
2023-07-20release gotcha 1.0.4 (#39007)Hariharan Devarajan1-2/+2
2023-07-20tinygltf: new versions and add release branch (#39012)Martin Aumüller1-0/+5
* tinygltf: new versions and release branch for each minor release available, the newest patch release has been added --------- Co-authored-by: aumuell <aumuell@users.noreply.github.com>
2023-07-20qt: make partially buildable on macos (#38990)Martin Aumüller1-5/+5
- drop use_xcode = True, as this would lead to an attempt install Xcode (#34064) - don't automatically build Qt Location with +opengl, as this is still broken This built sucessfully with qt@5.15.10+opengl+dbus+phonon on ventura/arm without Xcode installed (only command line tools) - I did not check with Xcode installed.
2023-07-20py-lightly: add v1.4.13 (#39019)Adam J. Stewart1-0/+1
2023-07-20[py-wasabi] added version 1.1.2 (#38268)Jen Herting1-1/+6
* [py-wasabi] added version 1.1.2 * [py-wasabi] flake8 * [py-wasabi] - added dependency on py-colorama - updated homepage * [py-wasabi] removed python check for py-colorama * [@spackbot] updating style on behalf of qwertos --------- Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-07-20py-stack-data: add 0.6.2 (#38952)Manuela Kuhn1-0/+4