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2021-10-11py-templateflow: add 0.4.2 (#26471)Manuela Kuhn1-5/+9
* py-templateflow: add 0.4.2 * py-templateflow: fix python dependency for 0.4.2 * py-templateflow: remove wheel dependency for older versions
2021-10-11py-pysurfer: add new package (#26638)Manuela Kuhn1-0/+27
2021-10-12py-pandas: fix installation and tests for versions @:0.25 (#26668)Manuela Kuhn1-15/+11
2021-10-12fleur: new package (#26631)Daniele Cesarini1-0/+182
2021-10-11Faodel: Update for the v1.2108.1 release (#26516)Todd Kordenbrock1-10/+12
2021-10-12frontier-client: add missing openssl dependency (#26636)Valentin Volkl1-0/+1
2021-10-12openblas: fix build on riscv64 (#26565)Kevin Pedretti1-2/+10
OpenBLAS now has support for the riscv64 architecture. This commit extends the spack openblas package.py to handle building on riscv64.
2021-10-11bcl2fastq2: add boost@1.55 as default boost dependency (#26655)Alan Sill1-1/+1
When PR #26659 is merged, boost version boost@1.54.0 will be available for build too. Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-11motif package: fix linking the simple_app demo program (#26574)Bernhard Kaindl1-0/+7
2021-10-11New Package Qualimap:2.2.1 (#26615)Desmond Orton1-0/+26
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-11GNU parallel package: add version 20210922 (#26591)Derek Ryan Strong1-0/+1
2021-10-11openCARP packages: add version 8.1 (#26602)Marie Houillon3-4/+7
2021-10-11mapserver: Add missing deps: giflib and postgresql (#26619)Bernhard Kaindl1-0/+2
2021-10-11llvm: add conflict for newer apple-clang versions (#26633)Seth R. Johnson1-1/+2
2021-10-11mesa: gallium fails with llvm@13: use 'llvm@6:12', add mesa@21.2.3 (#26627)Bernhard Kaindl1-1/+2
The software rasterizer of Mesa's Gallium3D(even @21.2.3) fails to build with llvm@13.0.0, use: depends_on('llvm@6:12', when='+llvm')
2021-10-11kahip: update build system to cmake for v3.11, retain scons for older ↵Matthew Archer1-6/+17
versions (#25645) * kahip: update to cmake for v3.11, retain scons for older versions * kahip: update build system to cmake for v3.11, retain SCons for older versions * address PR comments and add maintainer * address PR comments - correct version to 2.10, add deprecated and url, and remove scons version
2021-10-11Update of siesta libs (#26489)Daniele Cesarini3-7/+78
2021-10-11Add new versions of kiwisolver (#26597)iarspider1-0/+9
2021-10-10New package: py-cppy (required for py-kiwisolver) (#26645)iarspider1-0/+20
2021-10-09py-nilearn: add 0.4.2 and 0.6.2 (#26635)Manuela Kuhn1-16/+61
2021-10-09py-pyvistaqt: add new package (#26637)Manuela Kuhn1-0/+20
2021-10-09environment-modules: fix build (#26632)Michael Kuhn1-2/+2
PR #25904 moved the `--with-tcl` option to only older versions. However, without this option, the build breaks: ``` checking for Tcl configuration... configure: error: Can't find Tcl configuration definitions. Use --with-tcl to specify a directory containing tclConfig.sh ```
2021-10-09idna: Add versions 2.9 for sierrapy #23768 and 3.2(current) (#26616)Bernhard Kaindl1-1/+4
py-sierrapy was merged accidentally and pins its versions to exact numbers. Add 2.9 as the version for sierrapy and the current 3.2
2021-10-09py-awkward: add py-yaml as depends (#26626)Joseph Wang1-0/+1
2021-10-09evtgen: fix pythia typo (#26625)Joseph Wang1-1/+1
2021-10-09librsvg: fix build when does not use -pthread for linking (#26592)Bernhard Kaindl1-0/+2
librsvg uses pthread_atfork() but does not use -pthread on Ubuntu 18.04 %gcc@8
2021-10-08Add R 4.1.1 (#26589)Derek Ryan Strong1-0/+1
2021-10-09Add Julia 1.6.3 (#26624)Derek Ryan Strong1-0/+1
2021-10-08py-twisted,py-storm: dep on zope.interface, bump storm version (#26610)Bernhard Kaindl3-7/+13
* py-twisted,py-storm: dep on zope.interface, bump storm version py-twisted and py-storm's import tests need zope.interface. py-storm: Use pypi and add version 0.25. It didn't change reqs. zope.infterface@4.5.0 imports removed Feature: Use setuptools@:45 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-storm: all deps updated with type=('build', 'run') Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08Trilinos: update for CUDA and Nalu-Wind (#26614)psakievich2-4/+5
2021-10-08py-hypothesis: Add variants django, dumpy, pandas and fix import tests (#26604)Bernhard Kaindl1-1/+29
2021-10-08py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency (#26596)Manuela Kuhn4-2/+8
* py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency * Update var/spack/repos/builtin/packages/py-bleach/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-pymatgen: fix build of old versions, bump version to 2021.3.9 (#26249)Bernhard Kaindl5-5/+32
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-anytree: Add dep py-six@1.9.0 as required by setup.py (#26603)Bernhard Kaindl1-0/+2
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-matplotlib: fix 3.4.3 (#26586)Manuela Kuhn1-2/+2
* py-matplotlib: fix 3.4.3 * Update var/spack/repos/builtin/packages/py-matplotlib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-traceback2: Fix depends_on: add six and py-linecache2 (#26607)Bernhard Kaindl1-0/+2
2021-10-08py-keras-preprocessing: Add missing deps: six@1.9.0: and numpy@1.9.1: (#26605)Bernhard Kaindl1-0/+2
* py-keras-preprocessing: Add missing deps: six@1.9.0: and numpy@1.9.1: Add deps: pip download --no-binary :all: keras-preprocessing==1.1.2 Collecting numpy>=1.9.1 Installing build dependencies: started Collecting six>=1.9.0 * Update var/spack/repos/builtin/packages/py-keras-preprocessing/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-neurora: add new package (#26479)Manuela Kuhn1-0/+25
2021-10-08cling: add missing CMake dependency (#26577)Rodrigo Ceccato de Freitas1-0/+2
2021-10-08llvm: llvm@13+libcxx needs a very recent C++ compiler (#26584)Bernhard Kaindl1-0/+9
libc++-13 does not support %gcc@:10, see: https://bugs.llvm.org/show_bug.cgi?id=51359#c1 https://libcxx.llvm.org/#platform-and-compiler-support says: - GCC 11 - latest stable release per GCC’s release page - Clang: 11, 12 - latest two stable releases per LLVM’s release page - AppleClang 12 - latest stable release per Xcode’s release page
2021-10-08re2 pic support (#26513)Pedro Demarchi Gomes2-3/+8
2021-10-07Updatepackage/minigmg (#26467)Oliver Perks4-5/+136
* MiniGMG, add support for optimised flags + SIMDe implementation of AVX instrinsics * Add .gitlab-ci.yml * NVHPC fast * remove CI * Syntax fix
2021-10-07itk: use CMakePackage helpers (#26572)Seth R. Johnson1-18/+13
2021-10-07apex: support profiling/tracing HIP applications (#26569)Kevin Huck1-0/+13
libz is added for compressing google trace events output.
2021-10-07visit: add an external find function (determine_version) (#25817)Olivier Cessenat1-0/+11
* visit: add an external find function (determine_version) * visit: correct too long comment line * visit: forgot to set executables * visit: external find uses signgle dash version * visit: found as external asking visit version
2021-10-06py-mayavi: add 4.7.3 (#26566)Manuela Kuhn1-5/+10
2021-10-06fish: adding version 3.3.1 (#26488)Tyler Funnell1-3/+13
* fish: adding version 3.3.1 * adding maintainer * Update var/spack/repos/builtin/packages/fish/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-06py-scikit-image: add 0.18.3 and fix dependencies (#26406)Manuela Kuhn1-22/+46
2021-10-06New package: py-clean-text (#26511)Jen Herting1-0/+21
* [py-clean-text] created template * [py-clean-text] - added description - added dependencies - removed fixmes
2021-10-06Patch from upstream needed to build numactl on riscv64. (#26541)Kevin Pedretti2-0/+54
The most recent release of numactl (2.0.14) fails to build on riscv64 because of a missing "-latomic". This patch from upstream resolves this issue. It can be dropped once the next version of numactl is released.
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