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2021-07-02curl: explicitly disable unused dependencies (#24613)Seth R. Johnson1-5/+17
I installed curl on my mac and it picked up a homebrew (I think?) installation of gsasl. A later system update broke git because of the implicitly added dependency. Explicitly disabling libraries that *might* exist on the system is the safe approach here. ``` dyld: Library not loaded: /usr/local/opt/gsasl/lib/libgsasl.7.dylib Referenced from: /rnsdhpc/code/spack/opt/spack/apple-clang/curl/gag5v3c/lib/libcurl.4.dylib Reason: image not found error: git-remote-https died of signal 6 ```
2021-07-02dataspaces: move compiler vars to setup_build_environment (#24626)Chuck Atkins1-5/+12
2021-07-02GEOS: add v3.9.1, switch to CMake (#24629)Adam J. Stewart1-35/+12
2021-07-02amrex: add v21.07 (#24655)Weiqun Zhang1-0/+3
Also add conflict with rocm-4.2.
2021-07-01amdlibflame: fix build with gcc from CrayPE (#24358)Tiziano Müller2-0/+29
fixes #24210
2021-07-01sombrero: add new package (#24567)Mosè Giordano1-0/+34
2021-07-01xsd: added patch to fix missing #include <iostream> (#24496)Matthieu Dorier1-0/+6
2021-07-01WarpX: FFTW+OpenMP (#24604)Axel Huebl1-1/+1
FFTW: prefer with OpenMP acceleration for OpenMP compute backend
2021-07-01Update dill (#24633)Sebastian Schmitt1-1/+3
2021-07-01Added Perl workaround for CUDA <= 8 (#24291)Maciej Wójcik1-1/+20
* Added Perl workaround for CUDA <= 8 * Re-wrapped comment * Proofreading corrections * Added a reference * Do not override Perl include path * Retrieve shell once Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-07-01trilinos: improve behavior of `gotype` (#24565)Seth R. Johnson1-18/+15
* trilinos: add teko conflict * trilinos: improve gotype variant Instead of 'none' and 'long' typically being the same (but not for older trilinos versions), add an explicit 'all' variant that only works for older trilinos which supports multiple simultaneous tpetra instantiations. * trilinos: add self as maintainer * trilinos: disable vendored gtest by default
2021-07-01yoda: add v1.9.0 and compiler conflict for earlier versions (#23814)Valentin Volkl1-0/+5
2021-07-01hdf: replacing use of install test root with new cached tests dir (#24368)Tamara Dahlgren1-4/+10
2021-07-01sensei: repo update (#24487)kwryankrattiger1-12/+12
2021-07-01vim: use value variant and update config script (#24554)Seth R. Johnson1-76/+43
This changes several conflicting variants to a single multi-value variant, and uses conflicts instead of raising InstallError. (With clingo, requesting +gui automatically selects features=huge!) I have also rearranged the dependencies for clarity and simplified the conifgure args.
2021-06-30sirius: add v7.2.5 (#24587)Harmen Stoppels1-1/+2
2021-06-30py-wxpython: Version update to 4.1.1 (#24569)Desmond Orton1-3/+4
2021-06-30root: Add Version 6.24.02 (#24619)Dr. Christian Tacke1-1/+3
Also fixes some style issues
2021-06-30python: new versions; 3.9.6, 3.8.11, 3.7.11, 3.6.14 (#24593)Robert Mijakovic1-4/+7
2021-06-30py-torchvision: add v0.10.0 (#24340)Adam J. Stewart1-0/+3
2021-06-30py-torch: overhaul package (#24294)Adam J. Stewart3-142/+299
* py-torch: patch no longer needed on master * Overhaul PyTorch package * py-torch: add v1.9.0 * Change defaults on macOS * Submodules still needed... * Add ONNX dependency * System libs don't work for many submodules * Silence CMake warning * Add conflict for +cuda+rocm * Add more deps * Add more BLAS options * Disable some broken system libs options * Add patches to build older versions * +mkldnn requires mkl * Fix BLAS settings
2021-06-30scr and other packages: rename default branches to main (#24578)Adam Moody9-19/+17
2021-06-30py-vermin: add v1.2.1 (#24607)Morten Kristensen1-1/+2
2021-06-30py-pytorch-sphinx-theme: add master version (#24594)Adam J. Stewart1-2/+2
2021-06-30cmake: add v3.20.4, v3.20.5 (#24582)Robert Mijakovic1-0/+2
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-06-30r-stringi: add v1.6.2 (#24585)Manuela Kuhn1-4/+6
2021-06-30darshan-runtime,darshan-util: add v3.3.1 + updated git repository (#24574)shanedsnyder2-9/+12
2021-06-29genfit package: add googletest dependency (#24467)Thomas Madlener1-0/+1
2021-06-29HiPACE++: FFTW+OpenMP (#24575)Axel Huebl1-2/+2
- change the default compute backend: we just start to add OpenMP support - FFTW: prefer with OpenMP acceleration for OpenMP compute backend
2021-06-29New package: py-datasets (#24597)Jen Herting1-0/+35
* [py-datasets] created template * [py-datasets] added dependencies * [py-datasets] requires py-pyarrow with +parquet * [py-datasets] Final cleanup - added homepage - added description - removed fixmes
2021-06-29dependency for py-torchmeta (#24595)Jen Herting1-0/+20
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-06-29hdf5: a follow-up to #18937 (#23820)Sergey Kosukhin6-826/+170
2021-06-29py-nipype: add 1.6.1 (#24584)Manuela Kuhn1-0/+1
2021-06-29py-nilearn: add 0.8.0 (#24583)Manuela Kuhn1-5/+13
2021-06-29Fix prefix-collision detection for projections (#24049)Harmen Stoppels1-1/+2
If two Specs have the same hash (and prefix) but are not equal, Spack originally had logic to detect this and raise an error (since both cannot be installed in the same place). Recently this has eroded and the check no-longer works; moreover, when defining projections (which may truncate the hash or other distinguishing properties from the prefix) Spack was also failing to detect collisions (in both of these cases, Spack would overwrite the old prefix with the new Spec). This PR maintains a list of all "taken" prefixes: if a hash is not registered (i.e. recorded as installed in the database) but the prefix is occupied, that is a collision. This can detect collisions created by defining projections (specifically when they omit the hash). The PR does not detect collisions where specs have the same hash (and prefix) but are not equal.
2021-06-29py-numpy: conflict with gcc11 and switch master to main (#24573)Manuela Kuhn1-4/+8
Fix syntax of conflict between numpy 1.21.0 and gcc11 to that the clingo concretizer recognizes it. In addition the upstream master branch was renamed to main.
2021-06-29New package: py-pyautogui (#24572)Jen Herting1-0/+32
* [py-pyautogui] created template * [py-pyautogui] added some unconditional dependencies * [py-pyautogui] Final cleanup - added homepage - added description - removed fixmes * [py-pyautogui] added missing dependencies
2021-06-29CGNS: add CMake dependency (#24564)Christoph Conrads1-0/+3
2021-06-29ruby: add v3.0.1 (#24560)holrock1-0/+1
2021-06-29simgrid: add v3.27, update package (#24513)Vinícius1-5/+32
2021-06-29New package: py-huggingface-hub (#24588)Jen Herting1-0/+26
* [py-huggingface-hub] created template * [py-huggingface-hub] added dependencies * [py-huggingface-hub] added version 0.0.8 * [py-huggingface-hub] Final cleanup - added description - added homepage - removed fixmes
2021-06-29libzmq: Fix gcc11 build failure (#24563)Chuck Atkins1-0/+3
2021-06-28py-scipy: fix missing py-cython dependency (#24548)Manuela Kuhn1-0/+1
2021-06-28Hdf5 cmake (#18937)Larry Knox5-103/+769
* Switch hdf5 package from autotools to cmake. * Add variant for building with zlib, default to ON. * Update for format requirements. * Format change. * Fix breakage from last merge from develop. Switch szip to use libaec (unrestricted encryption). Remove 'static' variant: static libs will only be installed when ~shared. * Improve args based on suggestions from pull request. * Update code URL to github.com Add/modify 4 depends_on lines to fix running "spack graph --deptype=link hdf5". * Remove trailing whitespace. * Remove dependencies added solely to make "spack greph --type=link" work. * Add new version HDF5 1.8.22. * Remove unnecessary java_check. * Fix whitespace for style checks. * Reverted zlib version dependency to 1.1.2:. zlib variant removed. api version default renamed "default". * Remove blank line. * Whitespace corrections. * iRemoved unnecessary 'debug' variant. * Fix typo in version number in conflict for '+szip'. * Set default for tools variant to True. Remove patch functions dependent on 'libtool' file that cmake doesn't produce. * Remove line to set ONLY_SHARED_LIBS to true. Add post_install code to install only one version of tools with shared linkage and original tool names. * Remove trailing white space and import of glob package not used. * Leave BUILD_TESTING set to default which is ON. * Remove post_install code to install only one version of tools because some dependent packages running tests in e4s testing are using h5diff-shared. Keep both tools versions for now. * No longer need to import os.
2021-06-28glib: add v2.68.3 (#24558)Michael Kuhn1-0/+1
2021-06-28GDB: resolve warnings about imp being deprecated (#24448)Robert Underwood2-0/+22
This patch has already been accepted into gdb's trunk, we just adopting it earlier here since it is small and gives a better user experience.
2021-06-28Add Asio package (#24485)Mikael Simberg1-0/+81
2021-06-28New Package: visit-mfem (#22906)Olivier Cessenat1-0/+95
2021-06-28pfunit: fix gcc10 +mpi (#23878)Kai Germaschewski1-1/+3
Instead of refusing to build +mpi with gcc10, add what I guess is now the standard workaround, ie., `-fallow-argument-mismatch`. Getting this into pfunit's cmake-based but kinda non-standard build isi a bit ugly, but you gotta do what you gotta do...
2021-06-28Fix kokkos version number in lammps. (#24436)Jianwen1-1/+1