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2016-09-21Stop python from linking with system ncurses (#1672)Glenn Johnson2-0/+13
Python will look to link with libncursesw in preference to libncurses. Since ncurses in spack is built without suffixes there is no libncursesw and python will link to the system libncursesw for _curses.so and _curses_panel.so, as well as libpanelw for _curses_panel.so. This PR introduces a patch that simple removes the check for ncursesw in setup.py and therefore sets `curses_library` to `ncurses`.
2016-09-21Build pkg-config files for ncurses (#1673)Glenn Johnson1-1/+4
2016-09-21Rework libgd package (#1679)Glenn Johnson1-10/+25
* Added missing libtiff dependency * added dependency on fontconfig * Added version 2.2.3 * use autotools rather than cmake The cmake build was not producing a complete install. * There was no versioning of the installed libraries. * gdlib-config was missing * pkgconfig directory was missing These problems do not happen when built with autotools.
2016-09-21Merge branch 'efischer/160914-FixBinutils226Question' of ↵Todd Gamblin3-4/+5
git://github.com/citibeth/spack into bugfix/efischer-160914-FixBinutils226Question
2016-09-21Close #1683 Apply ADIOS 1.10.0 Patch (HDF5 1.10+) (#1699)Axel Huebl2-9/+42
* Close #1683 Apply ADIOS 1.10.0 Patch Also correct version dependencies and comments. * Clean Up ADIOS - add develop - simplify HDF5 options (parallel only) - remove optional netCDF (not fully v4)
2016-09-21cp2k : added dependencies (#1724)Massimiliano Culpo4-7/+157
* wannier90 : added package (#24) * wannier90 : added package * cp2k : added dependency on wannier90 * elpa : updated package, added cp2k dependency (#26) Conflicts: var/spack/repos/builtin/packages/elpa/package.py
2016-09-21Set JAVA_HOME on module load and on dependent installs. (#1716)Alfredo Adolfo Gimenez1-0/+6
* Set JAVA_HOME on module load and on dependent installs. * Include environment setup from dependencies in dependee module (#1714)
2016-09-21grackle : added package (#1725)Massimiliano Culpo2-0/+160
Modifications : * grackle : added package * grackle : added version 2.2
2016-09-21Wrap yt package (#1751)Erik Schnetter1-0/+78
yt is a python package for analyzing and visualizing volumetric, multi-resolution data from astrophysical simulations, radio telescopes, and a burgeoning interdisciplinary community.
2016-09-21Qt library: added variant to enable/disable compilation of examples (#1763)Sergey Kosukhin1-1/+7
2016-09-20Compiling python with gnu c++ on macos fails with toolboxglue enabled.Patrick Gartung1-0/+2
2016-09-20added STAT release 3.0.0Gregory L. Lee1-2/+2
2016-09-20Julia: Add version 0.5.0 (#1809)Erik Schnetter1-2/+3
2016-09-20Remove url_for_version as it breaks spack info (#1503)Adam J. Stewart1-6/+0
2016-09-20Update Package: Git-LFS (#1769)Joseph Ciurej3-27/+109
* Fixed a few small bugs in the 'git-lfs' install script. * Fixed a bug in the '(go|go-bootstrap)@1.4.2+test' install scripts. * Fixing a minor style issue in the 'git-lfs' install script.
2016-09-20PETSc: Explicitly point to cpp when configuring (#1807)Erik Schnetter1-0/+4
I encountered an HPC system where PETSc's configure stage does not find a valid `cpp` (C preprocessor). Explicitly pointing to Spack's `cpp` wrapper resolves the problem.
2016-09-20Remove lingering boilerplate FIXMEs (#1756)Adam J. Stewart5-9/+8
2016-09-20Update Package: Metis (#1783)Joseph Ciurej2-84/+91
* Fixed a bug that was causing post-install METIS tests to fail. * Improved the patching procedure used in the 'metis' install script. * Enabled patch skipping for the 'metis' and 'parmetis' packages. * Fixed some minor style issues in the 'parmetis' package. * Improved the 'metis' test fix and added 'run_tests' support.
2016-09-20Add UberFTP utility (#1780)Robert D. French1-0/+44
2016-09-20dealii: add 8.4.2 (#1782)Denis Davydov1-5/+6
2016-09-20Add Python support to gdb. (#1790)Bruno Turcksin1-1/+10
2016-09-20Update Package : Zoltan (#1793)Joseph Ciurej1-44/+71
* Refactored and reorganized the 'zoltan' install script. * Fixed a few bugs with the '+mpi' and '+fortan' variants of 'zoltan'. * Reintroduced and improved the '+shared' variant for the 'zoltan' package. * Improved compatibility with different MPI providers for 'zoltan'.
2016-09-20samtools could not find the ncurses library (#1785)Tom Merrick1-1/+2
2016-09-20lmod : added support for the creation of hierarchical lua module files (#1723)Massimiliano Culpo1-2/+5
Includes : - treatment of a generic hierarchy (i.e. lapack + mpi + compiler) - possibility to specify which compilers are to be considered Core - correct treatment of the 'family' directive - unit tests for most new features
2016-09-20Update Julia to 0.4.7 (#1805)Erik Schnetter1-1/+2
2016-09-20Make VisIt build again (#1762)Erik Schnetter1-1/+4
- add new version 2.10.3 - explicitly require hdf5 variant ~mpi, since we don't know how to build with mpicc - explicitly disable glew since it may not be installed
2016-09-20Work around cmake problems in VTK (#1761)Erik Schnetter2-0/+23
The cmake scripts can't handle the semicolons in gcc's version output. Filter them out before detecting the version.
2016-09-20Tighten HDF5 version requirements for Silo (#1760)Erik Schnetter1-1/+2
2016-09-20Make cmake @2.8 build again (#1759)Erik Schnetter1-5/+7
2016-09-20Update hwloc to 1.11.4 (#1752)Erik Schnetter1-0/+1
2016-09-20Declare py-beautifulsoup4's dependency on py-setuptools (#1748)Erik Schnetter1-0/+2
2016-09-20Update curl to 7.50.3 (#1747)Erik Schnetter1-0/+2
* Update curl to 7.50.2 * Update curl to 7.50.3
2016-09-20Update OpenMPI to 2.0.1 (#1721)Erik Schnetter1-0/+1
2016-09-20Update OpenBLAS to 0.2.19 (#1702)Erik Schnetter1-0/+1
2016-09-20Reorder versions in openssl (#1601)Erik Schnetter1-7/+7
2016-09-20Update mbedtls to 2.3.0 (#1600)Erik Schnetter1-0/+1
2016-09-20Update cereal to 1.2.1 (#1599)Erik Schnetter1-0/+1
2016-09-20Update binutils to 2.27 (#1598)Erik Schnetter1-0/+1
2016-09-15Update mvapich2 to 2.2 (#1775)Michael Kuhn1-7/+6
2016-09-15[RtM] Added py-proj/package.py (RtM = Ready to Merge) (#717)Elizabeth Fischer1-0/+52
* Added py-proj package * Added bug-fix patched version to the package. * Removed dependency of py-proj on proj. * py-proj: Added missing dependency * py-proj: Removed versions from forked repos, now that necessary bug fixes have been merged into the main repo. * Update package.py Added a blank line that Travis wanted. * 1. Added copyright 2. Used setup_py 3. Added type='build' for dependencies.
2016-09-14Put back full-length URL.Elizabeth Fischer1-2/+1
2016-09-14Bug fix capturing which packages work with which binutils.Elizabeth Fischer2-2/+2
2016-09-14Resolved issues of py-pillow, py-scipy and binutils dependencies. Resolves ↵Elizabeth Fischer3-5/+7
#1506 py-pillow: Remove version dependency on binutils@2.25. In tests, it works just fine with binutils@2.26. Fixed flake8 issues.
2016-09-09Update netlib-lapack to 3.6.1 (#1597)Erik Schnetter1-0/+1
2016-09-09Add libiconv dependency for git (#1468)Erik Schnetter1-5/+7
Also remove "--without-pcre" flag that git does not understand any more.
2016-09-09Qthreads: Switch back to using tarball to get released version (#1739)Erik Schnetter2-26/+2
* Qthreads: Switch back to using tarball for download * Don't require autotools any more * Re-enable autotools * Remove autotools again * Use .tar.bz tarball; remove outdated code
2016-09-08New package h5hut (#1737)Erik Schnetter2-0/+71
* New package h5hut -- High-Performance I/O Library for Particle-based Simulations * Set up MPI compilers * Add version 1.8.12 to HDF5 * Correct Sphinx error
2016-09-08Declare fontconfig dependency on pkg-config (#1686)Erik Schnetter1-0/+1
2016-09-08Merge pull request #1553 from adamjstewart/fixes/netcdf-hdf5Todd Gamblin2-5/+11
Fix NetCDF/HDF5 dependency resolution problems
2016-09-08Add latest version of libpng, ncview depends on libpng (#1502)Adam J. Stewart2-1/+4
* Add latest version of libpng * ncview depends on libpng
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