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2024-09-20gcc: simplify setup_run_environment (#46505)Massimiliano Culpo1-26/+7
If the spec is external, it has extra attributes. If not, we know which names are used. In both cases we don't need to search again for executables. Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-20petsc@3.21 +rocm: add patches for rocm 6+ (#46486)eugeneswalker1-0/+10
2024-09-20gptune: don't make `git` attribute an Executable (#46492)Wouter Deconinck1-14/+11
* gptune: don't make `git` attribute an Executable * gptune: fine, I'll fix style myself then
2024-09-20Remove code from Compiler that is not used anymore (#45982)Massimiliano Culpo1-1/+1
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-19amr-wind: use CMAKE_CUDA_ARCHITECTURES (#46442)Jon Rood1-3/+1
2024-09-19py-pyogrio: add missing GDAL dependency (#46458)Adam J. Stewart1-0/+1
2024-09-19quantum-espresso: ensure no space in HDF5 lib variable (#46089)etiennemlb1-0/+5
* Ensure no space in HDF5 lib variable. * QE patch fix
2024-09-19bdw-gc: add v8.2.8 (#46286)Ivan Maidanski1-1/+2
2024-09-17Replace `if ... in spec` with `spec.satisfies` in h* and i* packages (#46387)Auriane R.50-215/+231
* Replace if ... in spec with spec.satisfies in h* packages * Replace if ... in spec with spec.satisfies in i* packages
2024-09-17variants: Unify metadata dictionaries to index by `when` (#44425)Todd Gamblin2-0/+35
Continuing the work started in #40326, his changes the structure of Variant metadata on Packages from a single variant definition per name with a list of `when` specs: ``` name: (Variant, [when_spec, ...]) ``` to a Variant definition per `when_spec` per name: ``` when_spec: { name: Variant } ``` With this change, everything on a package *except* versions is keyed by `when` spec. This: 1. makes things consistent, in that conditional things are (nearly) all modeled in the same way; and 2. fixes an issue where we would lose information about multiple variant definitions in a package (see #38302). We can now have, e.g., different defaults for the same variant in different versions of a package. Some notes: 1. This required some pretty deep changes to the solver. Previously, the solver's job was to select value(s) for a single variant definition per name per package. Now, the solver needs to: a. Determine which variant definition should be used for a given node, which can depend on the node's version, compiler, target, other variants, etc. b. Select valid value(s) for variants for each node based on the selected variant definition. When multiple variant definitions are enabled via their `when=` clause, we will always prefer the *last* matching definition, by declaration order in packages. This is implemented by adding a `precedence` to each variant at definition time, and we ensure they are added to the solver in order of precedence. This has the effect that variant definitions from derived classes are preferred over definitions from superclasses, and the last definition within the same class sticks. This matches python semantics. Some examples: ```python class ROCmPackage(PackageBase): variant("amdgpu_target", ..., when="+rocm") class Hipblas(ROCmPackage): variant("amdgpu_target", ...) ``` The global variant in `hipblas` will always supersede the `when="+rocm"` variant in `ROCmPackage`. If `hipblas`'s variant was also conditional on `+rocm` (as it probably should be), we would again filter out the definition from `ROCmPackage` because it could never be activated. If you instead have: ```python class ROCmPackage(PackageBase): variant("amdgpu_target", ..., when="+rocm") class Hipblas(ROCmPackage): variant("amdgpu_target", ..., when="+rocm+foo") ``` The variant on `hipblas` will win for `+rocm+foo` but the one on `ROCmPackage` will win with `rocm~foo`. So, *if* we can statically determine if a variant is overridden, we filter it out. This isn't strictly necessary, as the solver can handle many definitions fine, but this reduces the complexity of the problem instance presented to `clingo`, and simplifies output in `spack info` for derived packages. e.g., `spack info hipblas` now shows only one definition of `amdgpu_target` where before it showed two, one of which would never be used. 2. Nearly all access to the `variants` dictionary on packages has been refactored to use the following class methods on `PackageBase`: * `variant_names(cls) -> List[str]`: get all variant names for a package * `has_variant(cls, name) -> bool`: whether a package has a variant with a given name * `variant_definitions(cls, name: str) -> List[Tuple[Spec, Variant]]`: all definitions of variant `name` that are possible, along with their `when` specs. * `variant_items() -> `: iterate over `pkg.variants.items()`, with impossible variants filtered out. Consolidating to these methods seems to simplify the code a lot. 3. The solver does a lot more validation on variant values at setup time now. In particular, it checks whether a variant value on a spec is valid given the other constraints on that spec. This allowed us to remove the crufty logic in `update_variant_validate`, which was needed because we previously didn't *know* after a solve which variant definition had been used. Now, variant values from solves are constructed strictly based on which variant definition was selected -- no more heuristics. 4. The same prevalidation can now be done in package audits, and you can run: ``` spack audit packages --strict-variants ``` This turns up around 18 different places where a variant specification isn't valid given the conditions on variant definitions in packages. I haven't fixed those here but will open a separate PR to iterate on them. I plan to make strict checking the defaults once all existing package issues are resolved. It's not clear to me that strict checking should be the default for the prevalidation done at solve time. There are a few other changes here that might be of interest: 1. The `generator` variant in `CMakePackage` is now only defined when `build_system=cmake`. 2. `spack info` has been updated to support the new metadata layout. 3. split out variant propagation into its own `.lp` file in the `solver` code. 4. Add better typing and clean up code for variant types in `variant.py`. 5. Add tests for new variant behavior.
2024-09-17untangle spack.config / spack.util.cpus & spack.spec (#46427)Harmen Stoppels1-1/+0
2024-09-16kokkos, kokkos-kernels, kokkos-nvcc-wrapper: add v4.4.01 (#46377)Satish Balay4-1/+5
* kokkos, kokkos-kernels, kokkos-nvcc-wrapper: add v4.4.01 * trilinos: update @[master,develop] dependency on kokkos ==> Error: InstallError: For Trilinos@[master,develop], ^kokkos version in spec must match version in Trilinos source code. Specify ^kokkos@4.4.01 for trilinos@[master,develop] instead of ^kokkos@4.4.00.
2024-09-16lammps-example-plugin: add new versions, fix bug (#46331)Richard Berger1-5/+11
2024-09-16nghttp2: add v1.62.1, v1.63.0 (#46358)Wouter Deconinck1-0/+3
2024-09-16libxslt: add through v1.1.42 (now at gnome.org) (#46364)Wouter Deconinck1-6/+24
* libxslt: add through v1.1.42 (now at gnome.org) * libxslt: add v1.1.35 (apparently forgotten)
2024-09-16libedit: add v3.1-20240517, v3.1-20240808 (#46366)Wouter Deconinck1-2/+8
2024-09-16[py-httpx] Dependency fixes and simplifications (#46367)Jen Herting1-9/+9
2024-09-16hipfft: update @master dependency wrt rocfft (#46376)Satish Balay2-0/+3
* add master branch to rocfft and ensure its dependency on that branch for hip and rocm-cmake * ensure hipfft@master uses rocm-cmake@master
2024-09-16Use the correct variable in configure() in bash package.py (#46384)David Collins1-1/+1
2024-09-16duckdb: add v1.1.0, deprecate v0.10.0 (#46391)Teague Sterling1-1/+6
* duckdb: add v1.0.0, v0.10.3 * Adding issue reference * duckdb: add v1.1.0 --------- Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-16arborx: add 1.7 (#46392)Andrey Prokopenko1-6/+9
2024-09-16qt: add v5.15.15 (#46405)Wouter Deconinck1-0/+1
2024-09-16openblas and others: change flag_handler idiom to respect incoming flags ↵Greg Becker8-27/+19
(#46211) * openblas: fix flag_handler to respect flags * arpack-ng: fix flag_handler to respect flags * czmq: fix flag_handler to respect flags * flex: fix flag_handler to respect flags * json-c: fix flag_handler to respect flags * mpifileutils: fix flag_handler to respect flags * netlib-scalapack: fix flag_handler to respect flags * sed: fix flag_handler to respect flags --------- Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-09-16Add repositories for "requirements" and "flag mixing" unit tests (#46412)Massimiliano Culpo13-0/+161
2024-09-16freexl: add missing deps (#46330)Harmen Stoppels1-1/+11
2024-09-15petsc, mfem: update rocm dependency (#46324)Satish Balay2-1/+5
* petsc: configure requires rocm-core/rocm_version.h to detect ROCM_VERSION_MAJOR.ROCM_VERSION_MINOR.ROCM_VERSION_PATCH * mfem: add dependency on rocprim (as needed via petsc dependency) In file included from linalg/petsc.cpp:19: In file included from linalg/linalg.hpp:65: In file included from linalg/petsc.hpp:48: In file included from /scratch/svcpetsc/spack.x/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.4.0/petsc-3.22.0-7dsxwizo24ycnqvwnsscupuh4i7yusrh/include/petscsystypes.h:530: In file included from /scratch/svcpetsc/spack.x/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.4.0/rocthrust-6.1.2-ux5nmi4utw27oaqmz3sfjmhb6hyt5zed/include/thrust/complex.h:30: /scratch/svcpetsc/spack.x/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.4.0/rocthrust-6.1.2-ux5nmi4utw27oaqmz3sfjmhb6hyt5zed/include/thrust/detail/type_traits.h:29:10: fatal error: 'rocprim/detail/match_result_type.hpp' file not found 29 | #include <rocprim/detail/match_result_type.hpp> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-09-15Updated HyPar package (#46394)Debojyoti Ghosh1-4/+5
* updated HyPar repo links * updated configure args with and without MPI * updated checksum for zipped source
2024-09-14py-awkward: add v2.6.6 and py-awkward-cpp v35 (#46372)Juan Miguel Carceller2-1/+11
* py-awkward: add v2.6.6 and py-awkward-cpp v35 * Add dependencies on python and numpy * Add a conflict with GCC 14 * Move conflict to py-awkward-cpp * py-awkward: 2.1.1 depends on py-awkward-cpp@12 --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-14glab: add v1.46.1 (#46353)Alec Scott1-2/+9
2024-09-14goma: add v7.7.0 (#46362)Weston Ortiz1-0/+1
2024-09-14py-torchmetrics: add v1.4.2 (#46389)Adam J. Stewart1-3/+3
2024-09-14py-future: add version 1.0.0 (#46375)Richard Berger1-0/+1
2024-09-14enchant: new versions, update homepage and url (#46386)Richard Berger1-3/+15
2024-09-14texlive: add new versions (#46374)Richard Berger1-2/+14
* texlive: use https * texlive: add 20230313 and 20240312 versions
2024-09-13py-pydantic-core: new package (#46306)Jen Herting1-0/+22
* py-pydantic-core: new package * [py-pydantic-core] fixed licence(checked_by) * [py-pydantic-core] removed unnecessary python dependency --------- Co-authored-by: Alex C Leute <acl2809@rit.edu>
2024-09-13py-pypdf: new package (#46303)Jen Herting1-0/+21
* [py-pypdf] New package * [py-pypdf] added webpage
2024-09-13Seacas add libcatalyst variant 2 (#46339)jeffmauldin1-0/+12
* Update seacas package.py Adding libcatalyst variant to seacas package When seacas is installed with "seacas +libcatalyst" then a dependency on the spack package "libcatalyst" (which is catalyst api 2 from kitware) is added, and the appropriage cmake variable for the catalyst TPL is set. The mpi variant option in catalyst (i.e. build with mpi or build without mpi) is passed on to libcatalyst. The default of the libcatalyst variant is false/off, so if seacas is installed without the "+libcatalyst" in the spec it will behave exactly as it did before the introduction of this variant. * shortened line 202 to comply with < 100 characters per line style requirement
2024-09-13nasm: add v2.16.03 (#46357)Wouter Deconinck1-0/+1
* nasm: add v2.16.03 * nasm: don't need 2.16.02
2024-09-13zziplib: add v0.13.78 (#46361)Juan Miguel Carceller1-0/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-09-13bash: use libc malloc on musl instead of internal malloc (#46370)David Collins1-0/+3
2024-09-13py-pycontour: add dev/fixes (#46290)Joseph Wang1-2/+3
2024-09-12e4s rocm external ci stack: upgrade to rocm v6.2.0 (#46328)eugeneswalker1-0/+1
* e4s rocm external ci stack: upgrade to rocm v6.2.0 * magma: add rocm 6.2.0
2024-09-12py-pip package: fix bootstrap for Python 3.12+ on Windows (#46332)James Smillie1-1/+10
2024-09-12fastjet: avoid plugins=all,cxx combinations (#46276)Wouter Deconinck1-6/+7
* fastjet: avoid plugins=all,cxx combinations * fastjet: depends_on fortran when plugins=all or plugins=pxcone
2024-09-12tl-expected: add v1.1.0; deprecated custom calver version (#46036)Wouter Deconinck1-8/+10
* tl-expected: add v1.1.0; deprecated calver version * tl-expected: fix url
2024-09-12py-httpx: added version 0.27.0 and 0.27.2 (#46311)Jen Herting1-22/+34
* py-httpx: New version * [py-httpx] fix when for dependencies * [py-httpx] organized dependencies * [py-httpx] added version 0.27.2 --------- Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-09-12emacs: add v29.4 (#46350)Alec Scott1-11/+11
* emacs: add v29.4 * confirmed license * emacs: update git link for https clones --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-12go: add v1.23.1 (#46354)Alec Scott1-0/+1
2024-09-12fd: add v10.2.0 (#46352)Alec Scott1-0/+3
* fd: add v10.2.0 * fd: add rust build dependency constraint
2024-09-12restic: add v0.17.1 (#46351)Alec Scott1-0/+1