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2020-05-25openmpi: get rid of implicit system dependencies (#16758)Sergey Kosukhin11-84/+553
* openmpi: get rid of implicit system dependencies * Python 2 compatibility. * Rename pbspro to openpbs and revert packages.yaml. * Remove virtual package 'sendmail'.
2020-05-25py-moreitertools: added v7.0.0 (#16802)iarspider1-0/+1
2020-05-25r-spatialeco: New package (#16744)Amjad Kotobi1-0/+40
2020-05-25netcdf-cxx4: remove erroneous variants (#16762)Tom Payerle1-30/+0
fixes #16725 The dap, jna, pnetcdf, netcdf4, and ncgen4 variants added in #16047 are _not_ supported by the configure script for netcdf-cxx4 package (These appear to be configure args for netcdf-c package).
2020-05-25libensemble: added v0.7.0 (#16773)Stephen Hudson1-1/+2
2020-05-25py-gdbgui: added v0.13.2.0 (#16781)Michael Kuhn1-8/+10
2020-05-25py-pygdbmi: added v0.9.0.3 (#16778)Michael Kuhn1-0/+4
2020-05-25libmonitor: added v2019.05.31 (#16774)Mark W. Krentel1-2/+3
2020-05-25py-pygments: added v2.6.1 (#16776)Michael Kuhn1-2/+4
2020-05-25libunwind: fix build with gcc@10: (#16782)Michael Kuhn1-1/+9
2020-05-25python: added v3.8.3 (#16775)Michael Kuhn1-0/+1
2020-05-25meson: added v0.54.2 (#16777)Michael Kuhn1-0/+3
2020-05-25py-flask: added v1.1.2 and v0.12.4 (#16779)Michael Kuhn1-1/+3
2020-05-25r-matlab: new package at v1.0.2 (#16785)Amjad Kotobi1-0/+18
2020-05-25testdfsio: added new package at v0.0.1 (#16789)darmac1-0/+24
2020-05-25sqoop: added new package at v1.99.7 (#16786)darmac1-0/+27
2020-05-25glib: added v2.64.3 (#16800)Michael Kuhn1-0/+1
2020-05-25ffsb: added new package at v5.2.1 (#16791)darmac1-0/+18
2020-05-25netlib-scalapack: specify MPI's location for Fujitsu-MPI. (#16798)Tomoki, Karatsu1-0/+9
Fujitsu-MPI wrapper commands aren't recognized from 'FindMPI' function of 'cmake'. If we are using the Fujitsu compiler and Fujitsu MPI, specify the MPI path information explicitly.
2020-05-25likwid: fixed failing build on powerpc (#16797)David Pape1-0/+1
Fixes #16783
2020-05-22TAU: remove ~nls constraint on binutils dependencyKevin Huck1-1/+1
TAU does not require ~nls.
2020-05-22flux-sched: add dependency type for flux-coreStephen Herbein1-7/+8
2020-05-22flux: add dependency types for `python` dependencyStephen Herbein1-4/+7
Flux requires `build` for python and many of the python packages because it builds python bindings. Beyond the bindings, the Flux front-end commands now use python too, hence the `run` type. Finally, Flux's `pymod` module is linked against the python interpreter, so the package requires a `link` dependency on python too.
2020-05-22flux: add latest releases and checksumStephen Herbein2-0/+4
The next release 0.17.0 will also require python3.6+, pre-emptively prepare for that release. Also support current master branch.
2020-05-22r-nimble: New packageAmjad Kotobi1-0/+27
2020-05-22r-rferns: New packageAmjad Kotobi1-0/+16
2020-05-22dealii: 9.2.0 release (#16743)Luca Heltai1-1/+2
2020-05-22r-reticulate: add version; dependencies (#16747)Amjad Kotobi1-1/+3
* Add version 1.15 * Add link dependency on r-rcpp * Add dependency on r-rappdirs
2020-05-22cdo: fix url for version 1.9.8Sergey Kosukhin1-1/+1
2020-05-22tasmanian: add version 7.1 (#16769)Miroslav Stoyanov1-1/+3
2020-05-22zstd: Add 1.4.5Michael Kuhn1-0/+1
2020-05-22py-horovod: add 0.19.3 (#16768)Adam J. Stewart1-1/+2
2020-05-22IWYU: fix 0.14 build (#16761)Seth R. Johnson1-1/+6
* IWYU: fix 0.14 build The CMake patch used for 0.13 hadn't been applied to the master when 0.14 was released, and this version of IWYU requires C++14 or higher. * Flake8
2020-05-22Mark Valgrind as conflicting with macOS > 10.13 (#16759)Seth R. Johnson1-0/+3
``` '/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-valgrind-3.15.0-mtir7ubjz7mqmjbb7bogze2qm35hl4ze/spack-src/configure' '--prefix=/ornldev/code/spack/opt/spack/clang-11.0.0-apple/valgrind/mtir7ub' '--enable-only64bit' '--build=amd64-darwin' 1 error found in build log: 43 checking host system type... x86_64-pc-darwin 44 checking for a supported CPU... ok (x86_64) 45 checking for a 64-bit only build... yes 46 checking for a 32-bit only build... no 47 checking for a supported OS... ok (darwin) 48 checking for the kernel version... unsupported (18.7.0) >> 49 configure: error: Valgrind works on Darwin 10.x, 11.x, 12.x, 13.x, 14.x, 15.x, 16.x and 17.x (Mac OS X 10.6/7/8/9/10/11 and macOS 10.12/13) ```
2020-05-22[Trilinos] Make MPI optional (#16685)Seth R. Johnson1-288/+213
* Make MPI optional for Trilinos * Use 'define' and 'define_from_variant' in trilinos package
2020-05-22ParaView: conflict ~opengl2 with versions 5.5 and up (#16742)Ethan Stam1-0/+3
2020-05-22prrte uses libev data structues, not libevent (#16530)Rob Latham1-1/+2
* use libevent not libev * Add Ralph Castain as a maintainer
2020-05-22ffr: add flag to use fixed format in which the length of one line of the ↵noguchi-k1-0/+2
source code is 255 when building with Fujitsu compiler. (#16737) * ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler. * ffr: changed to elif.
2020-05-22julia: Fix LLVM build failing with newer versions of CMake (#16738)Carlos Bederián1-1/+2
2020-05-22fraggenescan: new package at v1.31 (#16587)Justin S1-0/+25
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-22IWYU: update include-what-you-use version (#16760)Seth R. Johnson1-0/+2
2020-05-22superlu-dist: added v6.2.0 and v6.3.1 (#16704)Mathias Anselmann1-0/+2
2020-05-22julia: added v1.4.1 (#16739)Carlos Bederián1-0/+1
2020-05-22genometools: require cairo pdf backend (#16753)Justin S1-1/+1
2020-05-22sundials: added v5.2.0 and v5.3.0 (#16752)Cody Balos1-0/+2
2020-05-22charmpp: added support to Fujitsu compilers. (#16756)Toyohisa Kameyama2-0/+64
2020-05-21r-boruta: new package at v7.0.0 (#16746)Amjad Kotobi1-0/+23
2020-05-21r-caracas: new package at v1.0.0 (#16748)Amjad Kotobi1-0/+23
2020-05-20unifyfs: update gotcha dependency version (#16736)Cameron Stanavige1-3/+2
The dev branch of UnifyFS now depends on the latest release of GOTCHA, and will future releases. This updates our spackage to depend on the correct version of GOTCHA depending on the version of UnifyFS being installed.
2020-05-20r-spatstat: New package (#16729)Amjad Kotobi1-0/+32
* r-spatstat: New package * r-spatstat: version dependency added
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