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* geomodel: Allow configuring C++ standard
* drop c++11
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* parsec: update urls
* parsec: fix homepage
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* xfsprogs: fix dependency on gettext
* changed dependency on gettext in xfsprogs
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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* py-constantly: added version 23.10.4
* py-constantly: fixed dependency on py-versioneer
* py-constantly: updated py-versioneer dependency
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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* py-cryptography: add v43.0.3 (switch to maturin)
* py-cryptography: deny some setuptools versions
* py-cryptography: depends_on py-setuptools-rust when @42, no range
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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This new version is compatible with Tcl 9.0. It also requires
'util-linux' for new logging capabilities.
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* libunwind: Add 1.7.2 and 1.8.1
* libunwind: Remove deprecated 1.1 version
* libunwind: Add newer *-stable branches: Remove 1.5-stable branch as well as cleanup.
* libunwind: Use GitHub url for all versions
* libunwind: Add conflict for PPC and 1.8.*
* libunwind: Add conflict for aarch64 and 1.8:
Build fails with
aarch64/Gos-linux.c: In function '_ULaarch64_local_resume':
aarch64/Gos-linux.c:147:1: error: x29 cannot be used in asm here
}
^
aarch64/Gos-linux.c:147:1: error: x29 cannot be used in asm here
make[2]: *** [Makefile:4795: aarch64/Los-linux.lo] Error 1
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`py-deepsig-biocomp`), new packages (`py-pyhmmer`, `py-pyrodigal`) (#47277)
* added updated versions
* added pyhmmer
* updated infernal
* fix blast-plus for apple-clang
* fix py-biopython build on apple-clang
* remove erroneous biopython dep: build issue is with python 3.8, not biopython
* deepsig python 3.9: expanding unnecessary python restrictions
* add pyrodigal
* fix unnecessarily strict diamond version
* builds and updates: blast-plus indexing broken, still need to test db download and bakta pipeline
* builds and runs
* revert blast-plus changes: remove my personal hacks to get blast-plus to build
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* fix the build error during compilation of rocdecode.was dependent on libva-devel packag
* address review comment
* address review changes.commit the changes
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* Adding sha for 7.4 release of OSU Micro Benchmarks
* Adds the sha256sum for the OSU mirco benchmarks 7.5 release.
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* py-fsspec-xrootd: new package
* py-fsspec-xrootd: depends_on python@3.8:
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* Add two_level_namespace variant (default is disabled) for MacOS to enable building
executables and libraries with two level namespace enabled.
* Addressed reviewer comments.
* Moved two_level_namespace variant ahead of the patch that uses that variant to
get concretize to work properly.
* Removed extra print statements
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Fix typo wrt @xiaoyeli
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* rsyslog: add v8.2410.0
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* py-pyppeteer: new package
* py-pyee: new package (v11.1.1, v12.0.0)
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* pixman: add v0.44.0 (switch to meson)
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Co-authored-by: t. chantrait <teddy.chantrait@cea.fr>
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* soqt: Add SoQt package
The geomodel package needs this if visualization is turned on.
* make qt versions explicit
* use virtual dependency for qt
* pr feedback
Remove myself as maintainer
Remove v1.6.0
Remove unused qt variant
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Take a simpler approach to listing variant options -- store them in variables instead of trying to
roundtrip them through metadata dictionaries.
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-Wno-error=missing-template-arg-list-after-template-kw (#47477)
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* butterflypack: add v3.2.0
* strumpack: add v8.0.0
* restrict fj patch to @1.2.0
* Update var/spack/repos/builtin/packages/butterflypack/package.py
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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the py-oracledb package only has a single outdated version available in its recipe. this PR adds a much broader range of versions and their corresponding checksums.
* add more versions of py-oracledb
* update py-oracledb recipe
* add py-cython version dependencies
* tweak py-cython version dependencies
* remove older versions of py-oracledb
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value for --with-exodusii-lib] (#47506)
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* vbfnlo: depends on tcsh (build)
* vbfnlo: add v3.0
* vbfnlo: comment
Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
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Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
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This filters any selected executable ending with `-ocl` from the list of executables being probed as candidate for external `llvm` installations.
I couldn't reproduce the entire issue, but with a simple script:
```
#!/bin/bash
touch foo.o
echo "clang version 10.0.0-4ubuntu1 "
echo "Target: x86_64-pc-linux-gnu"
echo "Thread model: posix"
echo "InstalledDir: /usr/bin"
exit 0
```
I noticed the executable was still probed:
```
$ spack -d compiler find /tmp/ocl
[ ... ]
==> [2024-11-11-08:38:41.933618] '/tmp/ocl/bin/clang-ocl' '--version'
```
and `foo.o` was left in the working directory. With this change, instead the executable is filtered out of the list on which we run `--version`, so `clang-ocl --version` is not run by Spack.
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`conditional()`, which defines conditional variant values, and the other ways to declare
variant values should probably be in a layer above `spack.variant`. This does the simple
thing and moves *just* `conditional()` to `spack.directives` to avoid a circular import.
We can revisit the public variant interface later, when we split packages from core.
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
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* lua: add +pcfile support for @5.4: versions, without using a version-dependent patch
* lua: always generate pcfile, remove +pcfile variant from all packages
* lua: minor fixes
* rpm: minor fix
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* mbedtls: add v2.28.9, v3.6.1 (fix CVEs)
* mbedtls: add v3.6.2
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