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2021-12-16Additional flags for ROMS (#27951)AMD Toolchain Support1-1/+2
Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-16CMake: fix rhash detection (#27944)iarspider1-3/+46
* RHash: update version; create symlink librash.so * Install headers * Flake-8 * Update package.py * Update package.py * Update package.py (#19) * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/rhash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix installation on macOS Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-16hdf5: add version 1.10.8 (#27613)Larry Knox3-3/+65
* Update hdf5/package.py to add HDF5 1.10.8 release and move preferred version from 1.10.7 to 1.10.8. * silo: versions before 4.11 conflict with hdf5 >= 1.10.8. * Add patch file for silo@4.11 with hdf5 1.10 >=1.10.8 and hdf5 1.12 >= 1.12.1.
2021-12-16petsc: enable +rocm+kokkos (#27779)Satish Balay2-3/+29
Also fix kokkos-kernels when kokkos is built with +rocm
2021-12-16rocprofiler-dev package: needs numactl as link dep for tests (#27839)eugeneswalker1-0/+2
2021-12-16New package: py-pynisher (#28052)Jen Herting1-0/+20
* [py-pynisher] created template * [py-pynisher] - Added homepage - Added description - Removed fixmes - added dependencies
2021-12-16OpenMPI Package: add variant for romio (#27897)Howard Pritchard1-0/+4
Add option to disable the internal romio build.
2021-12-16New package: py-scinum (#28041)iarspider1-0/+19
* New package: py-scinum * Update var/spack/repos/builtin/packages/py-scinum/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-16wonton package: fix reference error (#27963)Tracy-Pantleo1-1/+1
2021-12-16New package: py-schema (#28039)iarspider1-0/+18
2021-12-16New package: py-shellingham (#28043)iarspider1-0/+19
2021-12-16New version: py-correctionlib 2.1.0 (#28051)iarspider1-0/+1
2021-12-16aocc: add v3.2.0 (#27946)vijay kallesh1-0/+2
Co-authored-by: amd-toolchain-support <toolchainsupport@amd.com>
2021-12-16MANPATH needs a trailing ':' to utilize system defaults (#21682)Andrew W Elble1-0/+1
otherwise spack breaks using system man pages by default. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-16Bugfix: Simplify preferred-test versions; set checksum defaults (#28026)Tamara Dahlgren1-7/+5
* Simplify preferred-test versions; set checksum defaults * Fix test_preferred failure
2021-12-16delly2: updating to v0.9.1 (#28000)snehring1-17/+29
2021-12-16meep: fixed dependencies (#27574)Thomas Green1-10/+28
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-16samtools: fixing build issue due to change in 1.14 (#28024)snehring1-5/+8
2021-12-15Fix for OpenFOAM pthread issue for AOCC 3.2 (#27949)AMD Toolchain Support1-0/+12
* Fix for OpenFOAM pthread issue for AOCC 3.2 * addressing the review comments * updating when command for aocc v3.2.0 and above Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-15pcre package: update download URL (#27867)Dennis R Kennetz1-1/+2
* ftp url is dead as stated in the home page. The sha256 is the same in the sourceforge dl. * added myself as a maintainer per spackbot's rec
2021-12-15New package: py-copulas (#27920)Jen Herting1-0/+28
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-15mpitrampoline package: add versions up to 2.8.0 (#27928)Erik Schnetter1-0/+6
2021-12-15py-matplotlib: add v3.5.1 (#27929)Adam J. Stewart1-0/+1
2021-12-15py-pandas: add v1.3.5 (#27930)Adam J. Stewart1-1/+3
2021-12-15assimp package: add version 5.1.3 (#27934)Wouter Deconinck1-0/+1
2021-12-15likwid package: add version 5.2.1 (#27935)Thomas Gruber1-0/+1
2021-12-15ExaGO package: add version 1.2.0; update dependency constraints (#27961)Asher Mancinelli1-8/+6
* PETSc is a core dependency, yet we left a variant for PETSc. This was removed, and ExaGO always depends on PETSc. The CMake arguments were updated accordingly. * camp+cuda is only a dependency when we build with RAJA and CUDA.
2021-12-15opa-psm2 package: add version 11.2.206 (#27968)snehring1-0/+1
2021-12-15RADICAL-Cybertools packages: add versions (#28002)Mikhail Titov3-5/+8
* py-radical-entk: add version 1.9.0 * py-radical-pilot: add version 1.10.1 * py-radical-utils: add version 1.9.1 * py-radical-utils: requires py-pymongo less than version 4
2021-12-15New package: py-trojanzoo-sphinx-theme (#27972)Adam J. Stewart1-0/+20
2021-12-15py-sphinx package: add version 4.3.1 (#27933)Adam J. Stewart1-2/+4
2021-12-15New package: py-pysqlite3 (#28020)iarspider1-0/+26
* New package: py-pysqlite3 * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-15New package: py-prwlock (#28017)iarspider1-0/+17
2021-12-15New package: py-pybrain (#28019)iarspider1-0/+20
2021-12-15New package: py-parsimonious (#28015)iarspider1-0/+18
2021-12-15New version: py-prompt-toolkit 3.0.24 (#28016)iarspider1-1/+3
2021-12-15libtree: add v3.0.0 (#28011)Harmen Stoppels1-1/+1
2021-12-15open3d: add new package (#27577)Adam J. Stewart5-0/+190
2021-12-15mesa: check correct LLVM variant for dylib (#27862)kwryankrattiger2-2/+2
2021-12-15mesa: add v21.2.6, v21.3.1 (#27796)Wouter Deconinck1-0/+3
2021-12-14New package: py-neurolab (#27996)iarspider1-0/+18
* New package: py-neurolab * Update package.py * Update package.py
2021-12-14New package: py-lizard (#27994)iarspider1-0/+20
* New package: py-lizard * Update package.py
2021-12-14New package: py-nbdime (#27995)iarspider1-0/+30
2021-12-14New package: py-law (#27993)iarspider1-0/+22
2021-12-14OpenLDAP package: update dependencies for 2.6.0 (#27830)iarspider3-21/+77
Update a number of dependency constraints for @2.6.0: (including adding new optional dependency package wiredtiger).
2021-12-14Abinit package: add option to install tests (#27842)downloadico1-0/+8
2021-12-14Add libtree 3.0.0-rc9 (#27990)Harmen Stoppels1-17/+32
2021-12-13New packages: py-keras2onnx, py-onnxconverter-common (#27962)iarspider2-0/+44
* New packages: py-keras2onnx, py-onnxconverter-common * Update package.py (#18) * Update package.py * Update package.py
2021-12-13Add a CI job to audit all the packages in the built-in repository (#27945)Massimiliano Culpo20-70/+15
* Add a CI job to audit all the packages in the built-in repository * flecsi: fixed typo for dependency on legion * py-pythonqwt: fix a typo in variant name * sollve: removed a conflict with a non-existing variant * acts: fixed use of wrong variant in dd4hep Also removed duplicated variant declaration in dd4hep * aoflagger: update variant of a dependency Issues introduced indirectly in #22925 * camellia: removed unused variant Issue introduced indirectly in #26150 * cbtf-*: remove cti variants and dependency on mrnet+cti Issue introduced in #14178 * flecsale: update variants to match flecsi Issue introduced in #11679 * grnboost: fixed issue with non-existing variant in a dependency This package possibly never worked since #8763 * nalu: fixed issue with non-existing variant in a dependency * open-iscsi: fixed issue with non-existing variant in a dependency * openspeedshop-*: remove use of non-existing mrnet+cti variant * percept: fixed issue with non-existing variant in a dependency * phyluce: fixed issue with non-existing variant in a dependency Issue introduced in #12952 * phyluce: fixed issue with non-existing variant in a dependency Issue introduced in #22340
2021-12-13CPU Architecture support (#27924)Scot Halverson1-7/+3
* CPU Architecture Support This commit removes the `native` variant in favor of Spack's built-in support for specifying a target cpu architecture. It also passes this information to the Legion build system so that it correctly passes the architecture to GASNet when built internally * fixing whitespace * Update package.py based on a conversation with @streichler, this change sets `BUILD_MARCH` to an empty string, which will prevent legion's CMake build system from inserting `-march=native` and allow Spack to provide the correct architecture flags. * Update package.py adding a comment on what problem this MR solves. * Update package.py formatting
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