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2023-03-01papi: more fixes for Intel OneAPI compiler (#34048)Howard Pritchard2-0/+43
The Intel OneAPI's extreme pickiness continues to bring out buggy/noncompliant code. This patch fixes an error in the configure.in embedded 'c' test code and also in a file with an initialized, but unused, variable. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-03-01Update FEniCSx libraries to v0.6 (#35600)Garth N. Wells7-36/+63
* Updates to release 0.6. * Dep updates * Dep version fix * Another version fix * Fix typo * UFL version fix * Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fenics-ffcx/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Some updates following review * Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * More updates * More updates * build/run updates * Small fix * Fix version number. * specify lower bounds for python dependencies * address style issues * address style issues * address PR comments * amend setuptools dependency to be of type build only * amend setuptools dependency to be of type run and build for ffcx and ufl * add build dependency to ensure import tests pass --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Matthew Archer <ma595@cam.ac.uk>
2023-03-01cp2k: fix builds on macOS, workaround reported issue with __contains__ (#35584)Tiziano Müller4-36/+39
Co-authored-by: Robert Cohn <rscohn2@gmail.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-03-01py-dbf: new versions and dependency (#35760)Erik Heeren1-0/+4
2023-03-01Fix superlu-dist package for cray fortran (#35728)luker1-1/+1
The superlu-dist code developers modified the code such that the patch is no longer needer for `@7.2.0:` (the patch will actually fail)
2023-03-01Py dask mpi (#35679)Erik Heeren3-0/+76
* py-dask-mpi: new package with dependencies * py-hatch-jupyter-builder is not needed after all * skip_modules seems cleaner * Update var/spack/repos/builtin/packages/py-jupyter-server-proxy/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-simpervisor/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-01py-fiona: add upper bounds to Python versions (#35658)Adam J. Stewart1-3/+18
* py-fiona: add upper bounds to Python versions * Add error msg
2023-03-01wrf: Fix compilation with GCC 10+ (#35177)Mosè Giordano1-1/+11
Flags `-fallow-argument-mismatch -fallow-invalid-boz` set in `FFLAGS`/`FCFLAGS` environment variables don't really have effect in older versions of WRF, we need to force them in the compiler wrappers. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-03-01py-particle: new versions 0.16.*, 0.20.*, 0.21.* (#35547)Wouter Deconinck1-2/+18
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-01sartre: new package (#32713)Wouter Deconinck1-0/+46
2023-03-01vc: improvements for testing (#28887)Valentin Volkl2-55/+25
2023-03-01mvapich2-gdr/mvapich2x: add v2.3.7, update package config (#33066)MatthewLieber2-14/+40
Co-authored-by: Nick Contini <contini.26@osu.edu>
2023-03-01hdf5-vol-async: add v1.5 (#35636)Houjun Tang1-0/+1
2023-03-01dd4hep: depends_on root +webgui when +ddeve ^root @6.28: (#35624)Wouter Deconinck1-1/+4
2023-03-01dpdk: add a new build system and version (#35647)H. Joe Lee1-4/+29
2023-03-01isa-l_crypto: add a new package (#35651)H. Joe Lee1-0/+46
2023-03-01isa-l: add a new package (#35650)H. Joe Lee1-0/+49
2023-03-01upp: add v10.0.8 (#35667)Alex Richert1-0/+2
2023-03-01grib-util: fix dependency constraints (#35668)Alex Richert1-2/+3
2023-03-01OOMMF: set preferred version (#35675)Hans Fangohr1-1/+3
With the last merge request for OOMMF [1], the intention was to have version 20b0_20220930 as the preferred version, and provide 20b0_20220930-vanilla as an additional version for the unlikely case anybody needed that. I made the (wrong) assumption that the `version` listed first in the `package.py` file would be the preferred version. This merge request is to correct that by explicitly tagging the preferred version with `preferred=True`. [1] https://github.com/spack/spack/pull/33072/files
2023-03-01docbook: resolve conflict in spack env view (#35682)Glenn Johnson2-2/+2
If the docbook packages - docbook-xml - docbook-xsl are installed in a spack environment view the catalog files will be in conflict in the view directory. This PR resolves that by adding an appropriate prefix to each catalog name so that they are unique in the view. The resulting XML_CATALOG_FILES environment variable will then be able to point to both of them.
2023-03-01dd4hep: new versions 1.25, 1.25.1 (#35665)Wouter Deconinck1-0/+2
2023-03-01elk: add v8.3.22 and fix a few issues (#35678)acastanedam1-17/+29
2023-03-01mbedtls: new versions and deprecations [CVE-2022-46392] (#35715)Harmen Stoppels1-9/+52
* Add new versions and deprecations [CVE-2022-46392] * remove maintainer, order versions by major no
2023-03-01cbench: renamed test_blas_linkage to check_blas_linkage (#35690)Tamara Dahlgren1-1/+1
2023-03-01py-uproot: new versions 4.3.*, 5.0.* (#35548)Wouter Deconinck1-2/+12
2023-03-01py-torchmetrics: add v0.11.2-3 (#35755)Adam J. Stewart1-0/+2
2023-03-01ascent: add v0.9.0 (#35211)Cyrus Harrison1-33/+130
2023-03-01hpcg: add arm compiler (#35710)Annop Wongwathanarat1-1/+10
2023-03-01scorep: more precise dependencies for v7/v8 (#35712)Bill Williams1-3/+4
2023-03-01Add new versions of Julia dependencies (#35622)Mosè Giordano3-1/+8
2023-03-01gts: add missing pkgconfig dependency (#35657)nicolas le goff1-0/+1
2023-03-01quantum-espresso: fix building with aocc (#35612)AMD Toolchain Support2-5/+12
Co-authored-by: Tooley, Phil <phil.tooley@amd.com>
2023-03-01nfft: add v3.2.4 (#35757)Henning Glawe1-0/+5
2023-03-01bacio: add v2.6.0, including handling of shared library builds (#35490)Edward Hartnett1-0/+5
2023-03-01hpctoolkit: add version 2023.03.01, add python variant (#35662)Mark W. Krentel2-104/+23
1. add version 2023.03.01 2. add variant 'python' that supports unwinding python source 3. clean up some things with the cray variant 4. require the latest libmonitor 5. fix sha256 checksum for url patch 6. delete rocm 5.3 from older versions
2023-03-01NCO: add v5.1.4 and v5.1.0 (#35753)Brian Vanderwende1-0/+2
2023-02-28Fix bufr package typo (libufr->libbufr) (#35740)Alex Richert1-1/+1
2023-02-28armcomputelibrary: add version 23.02 (#35723)Annop Wongwathanarat1-41/+10
2023-02-28Back-port a patch for filesystem logic in `gmx` executable. (#35672)M. Eric Irrgang1-0/+9
* Backport a patch for relocatable `gmx` executable. * spack style fixes
2023-02-28hpcviewer: add version 2023.02 (#35648)Mark W. Krentel1-0/+5
2023-02-28c-raft: add new package (#35735)Matthieu Dorier1-0/+37
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-27git-lfs: Add version 3.3.0 (#35671)Rémi Lacroix1-0/+1
2023-02-27Dyninst: add version 12.3.0 (#35630)Tim Haines1-0/+1
2023-02-27Package/py pysam macos (#33851)Luke Diorio-Toth2-4/+15
* cleaned up style, linked to external htslib * removed htslib/bcfrools/samtools deps, use bundled libs instead the pysam package includes the necessary libs to link to, so it wasn't even using linked libs when building * fixed style * revert to using external htslib currently uses bundled samtools and bcftools, and there is no way to use external versions for those dependencies * added libs property to htslibs package added support for lib64 * added htslib name
2023-02-27onednn: add variant to use Arm Compute Library on aarch64 (#35643)Annop Wongwathanarat1-2/+26
* onednn: add variant to use Arm Compute Library on aarch64 * Update cmake version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Shorten macro definition Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update cpu/gpu_runtime variants * Update acl variant when 1.7+ Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [@spackbot] updating style on behalf of annop-w * Add dependencies for new runtimes * Fix dependency package name to oneapi-level-zero --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-27py-awkward: new version 1.10.*, 2.0.* (#35549)Wouter Deconinck5-11/+157
* py-awkward: new version 1.10.*, 2.0.* Lots of changes in 2.0.*, see https://github.com/scikit-hep/awkward/releases. This will need some extra testing. * py-awkward: hatchling * Update var/spack/repos/builtin/packages/py-awkward/package.py * Update var/spack/repos/builtin/packages/py-awkward/package.py * py-scikit-build-core: new and improved py-scikit-build * py-awkward-cpp: new package * py-awkward: add depends_on py-awkward-cpp * py-awkward: depends_on py-packaging * py-awkward-cpp: new versions pinned by py-awkward * py-scikit-build-core: additional depends_on * py-awkward: branch master deprecated * py-pytest-subprocess: new package * py-pytest: new version 7.2.1 * py-scikit-build-core: add tests dependencies * [@spackbot] updating style on behalf of wdconinc * py-scikit-build-core: two more test dependencies * py-pytest: depends_on py-exceptiongroup * py-awkward: add pytest support * py-pytest: suggestions from review * py-scikit-build-core: suggestions from review * Update var/spack/repos/builtin/packages/py-awkward-cpp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-awkward: depends_on pyyaml when @:1, order old deps last * [@spackbot] updating style on behalf of wdconinc * py-awkward: move some opt deps to test, order test deps * py-awkward: remove test dependencies --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-27pango: add 1.50.13 (#35709)Michael Kuhn1-0/+1
2023-02-27osi: add version 0.108.7 (#35689)dlkuehn1-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-27clp: add version 1.17.7 (#35688)dlkuehn1-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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