Age | Commit message (Collapse) | Author | Files | Lines |
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On Cray machines, use the Cray compile wrappers instead of MPI wrappers.
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(#1897)
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Use boost system layout by default
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(#1987)
+ This change fixes a problem that manifests when trilinos is built against a
MKL installation defined as an external package. In this scenario, the MKL
libraries are found one directory deeper than for the case where spack
provides MKL. The extra directory is a platform name like 'intel64'.
+ The changes in this PR were recommended by contributor @davydden. I
implemented and tested with intel@16.0.3. These changes fix the issue I
reported. I did not attempt building trilinos against other BLAS
implementations.
+ fixes #1923
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* mfem: add tarball extension
Add tarball extension as a result of a feature added in PR#1926, which
fixes earlier issues in this PR (PR#1202). Prior to adding this feature,
Spack would not autodetect the extension of the tarball downloaded from
the redirected, shorted Google URL, requiring a messy hack. This hack
worked for mfem version 3.1, but led to errors when adding mfem version
3.2 because the files downloaded from Google did not contain the package
name, version number, or extension. Adding the extension enables Spack
to rename the tarball downloaded from Google to a sensible name that is
compatible with its filename parsing algorithms so that Spack "does the
right thing" (detects that the file is a GZipped tarball, decompresses
it, runs GNU Make) in fetching and staging the package.
* mfem: add linkage to KLU & BTF
Add linkage to the KLU & BTF solvers, which are now enabled in MFEM for
versions 3.2 and later.
* mfem: Add superlu-dist variant
Add linkage to SuperLU_DIST, which is a new linear solver interface for
MFEM versions 3.2 and later.
* mfem: add netcdf variant for cubit mesh support
Add NetCDF variant for MFEM versions 3.2 and later; installing the
NetCDF interfaces enables CUBIT mesh support.
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+ Cray compile wrappers are MPI wrappers.
+ Packages that need to be compiled with MPI compile wrappers normally use
'mpicc', 'mpic++' and 'mpif90' provided by the MPI vendor. However, when using
cray-mpich as the MPI vendor, the compile wrappers 'CC', 'cc' and 'ftn' must
be used.
+ In this scenario, the mpich package is hijacked by specifying cray-mpich as an
external package under the 'mpich:' section of packages.yaml. For example:
packages:
mpich:
modules:
mpich@7.4.2%intel@16.0.3 arch=cray-CNL-haswell: cray-mpich/7.4.2
buildable: False
all:
providers:
mpi: [mpich]
+ This change allows packages like parmetis to be built using the Cray compile
wrappers. For example: 'spack install parmetis%intel@16.0.3 ^mpich@7.4.2 os=CNL'
+ This commit relies on the existence of the environment variable CRAYPE_VERSION
to determine if the current machine is running a Cray environment. This check is
insufficient, but I'm not sure how to improve this logic.
+ Fixes #1827
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+ Previouly, these strings were hard coded to 'mpicc', 'mpic++', and 'mpifort'.
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* fix blas-lapack in scipy and numpy
* py-numpy: do not set rpath on macOS
* py-scipy: do not set Blas/Lapack. This appears to be picked up from py-numpy
* py-numpy: don't write rpath= in Sierra only
* py-numpy: add a link to build notes
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Charm++ only creates symbolic links instead of copying files. Correct this.
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Symengine and associated packages
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deps. (#1954)
- Some packages (netcdf) NEED RPATHs for transitive deps.
- Others (dealii) will exceed OS limits when the DAG is too large.
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(#1435)
* Updated all Python extension packages to use 'setup_py' on install.
* Fixed a few minor style issues with the updated Python packages.
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* Updated nettle to have m4 as an immediate dependency to match new PATH
construction logic which only includes immediate dependencies.
* Update package.py
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* Added check for ppc64le because configure cant guess the build type for rhel on ppc64le
Expand/clarify description of dependency types
Refactored getting the arch so that its less verbose
* Fixed flake8 issues
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* Update libtiff: updated homepage and fetch urls.
* Update libtiff: new version 4.0.6.
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* cgal: build out of source.
* Simplify cmake out-of-source.
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* everytrace: New package
Everytrace ensures that stack trace is obtained every time a program exits, for whatever reason.
* everytrace: Change CMake to build dependency
* Renamed to everytrace-example, flake8 and copyright issues.
* flake8
* Missing type=build
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* Warn user if flake8 can't find setuptools
* Add missing dependencies of flake8
* Updates to py-autopep8, make packages activateable
* Check for presence of setuptools for Sphinx too
* Fix bug in order of commands
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* PNGwriter, libSplash: Add `master` version
* PNGwriter, libSplash: Add `dev` versions
Can be used for now, `develop` is currently discouraged.
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features/install_with_phases_rebase
Conflicts:
lib/spack/spack/cmd/setup.py
lib/spack/spack/package.py
var/spack/repos/builtin/packages/gmp/package.py
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(#1317)
* Update grib-api: switched to cmake building system.
* Update harfbuzz: added pkg-config dependency.
* Update pango: added pkg-config dependency.
* Add libemos package.
* Add Magics (from ECMWF) package.
* Revert "Variant for building cdo without mpi (#1638)":
CDO does not use MPI.
This reverts commit 079d063c6d94be84974f1ddd6eb880e902c95b4a.
* Update CDO package: full featured implementation.
* Update magics: added python as build dependency.
* Update cdo: added disabling configuration options.
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* Spack package for HPCToolkit (performance analysis tool)
* Correction for PR comments, make flake8 happy
* update note / comments
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Fixes #1203. Apple ships headers in Yosemite (and possibly earlier) that
are gcc-incompatible, but compile fine with clang. The fix is to copy
the offending system header from /usr/include/${REST_OF_HEADER_PATH} to
${GCC_PREFIX}/include/${REST_OF_HEADER_PATH} and replace the non-gcc-
compatible features with gcc-compatible equivalents.
See https://github.com/hashdist/hashstack/pull/771/files for
inspiration, and
http://hamelot.io/programming/osx-gcc-dispatch_block_t-has-not-been-declared-invalid-typedef/
for a description of the header issue.
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* Adding last version of fenics and making trilinos not ambiguous on hdf5
* forcing fenics to ignore hdf5 cxx
* Adding deptypes and correcting the hdf5 patch
* flake8 corrections
* cleaning some useless code
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* Provide new versions of llvm.
+ Provide file list and md5 hashes for 3.8.1 and 3.9.0.
+ Clean up indentation for the 'releases' data structure to improve
consistency.
* Adding a block of code to the 'resources' structure for cfe.
* Merge cfe and clang resources into single entity.
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* Added hadoop, spark, and variant spark+hadoop
* Docstrings, dependency types, urls, copyright
* Flake8 fixes, link dependency for hadoop
* Build type for spark, env problem setting JAVA_HOME
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There is no librt on Darwin, and it's not necessary either.
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* New package: libquo
libquo is a high-level, easy to use programming interface tailored specifically
for MPI/MPI+X codes that may benefit from evolving process binding policies
during their execution. QUO allows for arbitrary process binding policies to
be enacted and reverted during the execution of an MPI/MPI+X application as
different computational phases are entered and exited, respectively.
https://github.com/losalamos/libquo
* Remove use of 'which' and fix style non-conformance.
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