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2024-05-18Add Pyomo 6.7.2 (#44097)Miranda Mundt1-2/+5
2024-05-18perl-xml-libxml: add new versions and conflicts (fixes #44253) (#44254)Teague Sterling1-0/+4
* Address #44253 by adding new versions and declaring conflicts for perl-xml-libxml * [@spackbot] updating style on behalf of teaguesterling * Update var/spack/repos/builtin/packages/perl-xml-libxml/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-18namd: add 3.0b7 (#44198)Carlos Bederián1-0/+1
2024-05-18Adding new spark versions (#44250)Teague Sterling1-0/+6
* Adding new spark versions (in preparation of HAIL package) * Adding myself as potential maintainer
2024-05-18yq: add new package (#44249)Teague Sterling1-0/+23
2024-05-18git: bump v2.39 to 2.45; deprecate unsafe versions (#44248)Chris Green1-15/+81
2024-05-18whizard: add gosam variant (#43595)Valentin Volkl3-2/+16
* whizard: add gosam variant * adress comments, fix compiler wrapper issue
2024-05-18ZeroSum: add new package (#44228)Kevin Huck1-0/+73
2024-05-18perl: add v5.36.3, v5.38.2; deprecate unsafe versions (#44186)Derek Ryan Strong1-36/+103
2024-05-17protobuf: update hash for patch needed when="@3.4:3.21" (#44210)dmagdavector1-2/+2
* protobuf: update hash for patch needed when="@3.4:3.21" * Update var/spack/repos/builtin/packages/protobuf/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * Update var/spack/repos/builtin/packages/protobuf/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-17netlib-scalapack: fix build with gcc@14 (#44120)Michael Kuhn1-1/+5
2024-05-17kakoune: add v2024.05.09 (#44124)James Taliaferro1-3/+7
2024-05-17GDAL: add v3.9.0 (#44128)Adam J. Stewart1-41/+65
2024-05-17Add latest Python versions (#44130)Derek Ryan Strong1-2/+6
2024-05-17spectre: add v2024.05.11 (#44139)SXS Bot1-0/+3
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2024-05-17py-cython: add 3.0.10 (#44140)Michael Kuhn1-0/+1
2024-05-17JAX: add v0.4.28 (#44112)Adam J. Stewart2-1/+6
2024-05-17pythia8: patch latest 8.311 for upstream bug (#43803)Wouter Deconinck1-0/+7
* pythia8: prefer 8.310 * [@spackbot] updating style on behalf of wdconinc * pythia8: filter_file to remove sed n * Revert "[@spackbot] updating style on behalf of wdconinc" This reverts commit e2a3decaffbd3f464d1bd992025e1812df49f088. * Revert "pythia8: prefer 8.310" This reverts commit 568cb056b87129085e245d9dbef1732ee1c6c0aa. * [@spackbot] updating style on behalf of wdconinc * pythia8: comment for fix * pythia8: fix style * pythia8: filter_file with raw string because of escaped pipe --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-05-17nalu-wind: fix trilinos rocm dependency (#44233)Jon Rood1-1/+1
2024-05-17tau: fix lib/include paths with oneapi (#44170)wspear1-2/+2
2024-05-17hpcviewer: Update URLs to use GitLab release assets (#44129)Jonathon Anderson1-79/+21
2024-05-17blis: add v1.0 (#44199)Carlos Bederián1-0/+1
2024-05-17spglib: add v2.4.0 (#44202)Rocco Meli1-0/+1
2024-05-17New versions nvpl-blas and nvpl-lapack (#44244)Raffaele Solcà2-1/+11
2024-05-17starpu: add v1.4.6 (#44203)Nathalie Furmento1-0/+1
2024-05-17fenicsx: remove deprecated versions (#44223)Garth N. Wells6-147/+16
2024-05-17cli11: new version and enable library (#44204)Seth R. Johnson1-2/+8
2024-05-17MOLGW: add v3.3 (#44241)Fabien Bruneval1-6/+15
Co-authored-by: Fabien Bruneval <fabien.bruneval@.cea.fr>
2024-05-17libxc: Fix compilation after distribution changes. (#44206)Rémi Lacroix3-186/+22
The release tarballs are not available anymore which means autoconf, automake and libtool are always needed. The NVHPC specific patches don't make sense anymore being that the patched files are not distributed in the new tar files.
2024-05-17libcatalyst: add missing python dependencies (#44224)Alberto Invernizzi1-0/+2
2024-05-17libcint: add v6.1.2, v5.5.0 (#44239)Fabien Bruneval1-1/+3
Co-authored-by: Fabien Bruneval <fabien.bruneval@.cea.fr>
2024-05-17exodusii: only use MPI fortran compiler if +fortran (#44211)Richard Berger1-1/+2
2024-05-17ecflow: versions up to 5.11.4 require boost 1.84 or earlier (#44181)Dom Heinzeller1-1/+2
2024-05-17hpx: change default of max_cpu_count variant to auto (#44220)Mikael Simberg1-3/+9
2024-05-17FEniCS: add more maintainers (#44240)Jack S. Hale1-1/+1
2024-05-17esmf: add v8.6.1 (#44229)Matt Thompson1-0/+1
2024-05-17fenics-dolfinx: add spdlog dependency (#44237)Garth N. Wells1-0/+1
2024-05-16Gitlab CI: Windows Configs (#43967)John W. Parent4-7/+20
Add support for Gitlab CI on Windows This PR adds the config changes required to configure and execute Gitlab pipelines running Windows builds on Windows runners using the existing Gitlab CI infrastructure (and newly added Windows infrastructure). * Adds support for generating child pipelines dispatched to Windows runners * Refactors the relevant pre-scripts, scripts, and post scripts to be compatible with Windows * Adds Windows config section describing Windows jobs * Adds VTK as Windows build stack (to be expanded later) * Modifies proj to build on Windows * Refactors Windows rpath symlinking to avoid system libs and externals --------- Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com> Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com> Co-authored-by: Todd Gamblin <tgamblin@llnl.gov> Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2024-05-16trilinos: catch kokkos inconsistency with trilinos (#44209)Paul Kuberry1-1/+26
* trilinos: catch kokkos inconsistency with trilinos * trilinos: update kokkos version range
2024-05-16Prefer llnl.util.symlink.readlink to os.readlink (#44126)John W. Parent3-3/+9
Symlinks on Windows can use longpath prefixes (\\?\); these are fine in the context of win32 API interactions but break numerous facets of Spack behavior that rely on string parsing/matching (archiving, binary distributions, tarball extraction, view regen, etc). Spack's internal readlink method (llnl.util.symlink.readlink) gracefully handles this by removing the prefix and otherwise behaving exactly as os.readlink does, so we should prefer that in all cases.
2024-05-16gaudi: Don't apply the patch if it has already landed upstream (#44180)Thomas Madlener1-0/+1
2024-05-16py-matplotlib: qualify when to do a post install (#44191)Howard Pritchard1-5/+15
* py-matplotlib: qualify when to do a post install Older versions of py-matplotlib don't seem to have some of the files that the post install step is trying to install. Looks like the files first appeared in 3.6.0 and later. Signed-off-by: Howard Pritchard <hppritcha@gmail.com> * Change install paths for older matplotlib --------- Signed-off-by: Howard Pritchard <hppritcha@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-16suite-sparse: improve setting of the `libs` property (#44214)Mosè Giordano1-1/+6
on some distros it is in lib64/
2024-05-15CoinHSL: Support the Meson build system and add new release (#43610)Andrew Lister1-36/+61
* Add maintainer and fix linting * allow for fewer deps in archive * use meson for archive packages * Fix version spec and f-string * fix blas dependency links * Add new release to spack * Fix checksums for latest release
2024-05-15iperf3: updated versions from 3.6 to 3.16 (#44152)dmagdavector1-2/+7
* Update version of iperf3 from 3.6 to 3.16 Spack currently only explicitly has version 3.6 of the iPerf3 package (out of ESnet / LBNL). This makes the default the latest version of 3.16, and adds some other versions (found in some Linux distros, for possible compatibility purposes). * iperf3: update to 3.17; update 3.6 hash for new url * protobuf: update hash for patch needed when="@3.4:3.21" * Revert "protobuf: update hash for patch needed when="@3.4:3.21"" This reverts commit 4d168d0b278039ac2b3c084b7df4c2ae7deb9d27.
2024-05-15unmaintained pkgs: bump versions 2024-05-10 (#44131)Alec Scott81-173/+224
* unmaintained pkgs: bump versions 2024-05-10 * openblas: fix satisfies syntax * pixman: add autotools dependencies * [@spackbot] updating style on behalf of alecbcs * pixman: revert * chapel: revert changes in favor of other PR * openblas: revert due to failing tests * Address review feedback for flint, biobam2, and pango * pango: add version comment about v2.0 * numactl: revert changes due to ppc4le bug * flint: remote duplicate configure arg Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * openvkl, rkcommon: remove commented maintainers template * flint: fix style --------- Co-authored-by: alecbcs <alecbcs@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-15enable tensorflow-2.14 and 2.16 for spack built ROCm (#44095)afzpatel6-34/+846
* initial commit to enable tensorflow-2.14 for spack built ROCm * fix style errors * modify hipcc patch * updates for rocm 6.1 * updates for tf-rocm-enhanced 2.16 * fix styling * fix styling * add patch for 2.16 * add patch for 2.16 * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * update rocm enhanced version names * changes for rocm-enhanced version name change * fix styling --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-15Fix gromacs installation with SVE. Issue 44062 (#44183)Paolo1-1/+1
* Fix gromacs installation with SVE. Issue 44062 * [@spackbot] updating style on behalf of paolotricerri * Remove `neoverse_n2` target We have removed the neoverse_n2 target as its detection is more involved compared to neoverse_v*.
2024-05-15gromacs: add 2024.2, 2023.5 (#44197)Carlos Bederián1-0/+2
2024-05-15VecGeom: new version 1.2.8 (#44179)Ben Morgan1-0/+5
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