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2024-06-04duckdb: add v1.0.0, v0.10.3 (#44531)Teague Sterling1-0/+9
* duckdb: add v1.0.0, v0.10.3 * Adding issue reference
2024-06-03py-fenics-dolfinx: dependency update (#44524)Garth N. Wells1-1/+2
* Update nanobind dependency * Update py-nanobind dependency
2024-06-03charmpp: enable darwin arm build (#44103)Nils Vu1-0/+3
2024-06-03py-nanobind: add v2.0.0 (#44371)Garth N. Wells1-0/+4
* Add nanobind 2.0.0 * Add dependency * Fix dependency name * Change "_" -> "-"
2024-06-03Update py-vl-convert-python (#44527)吴坎1-4/+14
* Update py-vl-convert-python: 1. set version to 1.4.0 2. set version 1.3.0 deprecated since its rust dependency curve@4.1.1 is not able to compile
2024-06-03hugo: add v0.126.3 (#44530)Owen Solberg1-0/+1
Co-authored-by: Owen Solberg <owen.solberg@sana.com>
2024-06-03seqfu: new package (#44445)Diego Alvarez S2-0/+45
* Add seqfu --------- Co-authored-by: dialvarezs <dialvarezs@users.noreply.github.com>
2024-06-03hip@6.1: fix reference to hsa-rocr-dev so it works when externally defined ↵eugeneswalker1-1/+1
(#44528)
2024-06-03nb: new package (#44456)James Taliaferro1-0/+45
* new package: nb * only one filter_file, install completions * completions now implicit, merged by the view
2024-06-03rdkit (#44476)Rocco Meli1-0/+1
2024-06-03pflogger: add version 1.15.0 (#44467)Matt Thompson1-0/+1
2024-06-03Slate version 2024 05 31 (#44529)G-Ragghianti3-0/+11
* updating version for slate, blaspp, and lapackpp * verified new hashes
2024-06-03`seacas`: protect against known mixed-toolchain problem (#44378)Chris Marsh1-0/+11
* Protected against a known problem with mixed gcc/apple-clang toolchains. Fixes #44330 --------- Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-06-03Apply patch to allow vtk to compile with %gcc 13 and 14. (#44332)Chris Marsh1-0/+8
* Apply patch from upstream to allow vtk compilation with %gcc 12 and 14. * Fixes #44331 * fix soec usage * fix compiler version range * Finalize version range, switch to .diff file --------- Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-06-02upcxx: update to latest gasnet and fix some bitrot (#44488)Dan Bonachea2-8/+42
* Now need to explicitly depend on libfabric for Cray EX * Ensure build uses the selected CUDA and ROCm versions * Correct spelling on `configure --with-ldflags` * Patch a defect regarding `configure --with-ldflags` * Default to Spack's copy of GASNet-EX, which is newer than embedded
2024-06-01gasnet: add v2024.5.0 (#44478)Dan Bonachea1-7/+17
* Add GASNet v 2024.5.0 * cosmetic fix to info output * Add a missing dependency * Ensure GASNet detects the provided ROCm/CUDA dependency * [@spackbot] updating style on behalf of bonachea --------- Co-authored-by: bonachea <bonachea@users.noreply.github.com>
2024-06-01py-fortls: add v3.1.0 (#44477)Rocco Meli1-1/+4
* Spglib: add version 2.4.0 * DLA-Future: fix +test option * update * [@spackbot] updating style on behalf of RMeli * Apply suggestions from code review Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: RMeli <RMeli@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01gmsh: add v4.11.1, master (#41320)Filippo Spiga1-0/+3
* Adding gmsh 4.11.1 * Becoming a maintainer --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01py-griddataformats: add v1.0.2 (#44475)Rocco Meli1-2/+5
* update * Apply suggestions from code review Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01apptainer: adding version 1.3.1 (#44104)snehring5-1/+80
e2fsprogs: adding version 1.47.0 and fuse2fs variant fuse-overlayfs: adding version 1.13 squashfuse: adding version 0.5.1 and 0.5.2 e2fsprogs: fixing audit errors apptainer: expanding deps to cover more versions, fix binary_path logic. apptainer: add go version deps, fix e2fsprogs patch sums, rework dep paths fuse-overlayfs: tightening up the libfuse dep Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-31mapl: add 2.46.2, 2.40.5 (#44466)Matt Thompson1-0/+2
2024-05-31pass: new package (#44454)James Taliaferro1-0/+63
* New package: password-store * add bash completion as variant * also patch the cygwin platform snippet * update description and maintainers * make completions implicit and don't overwrite the completions package * remove completion option * formatting * clean up file filter syntax * remove reference to completion variant * remove dependency on bash-completion * clarify comments * bashcompdir is already the default * add optional dependency on xclip * fix formatting
2024-05-31ruby: adding version 3.3.2 (#44447)snehring1-0/+1
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-31tamaas: adding new versions and python install fix (#44469)Lucas Frérot2-1/+75
* tamaas: install python extension with explicit pip call * tamaas: patching compilation issues with recent compilers * tamaas: added versions 2.7.0 and 2.7.1
2024-05-31add in the latest versions of FMS (#44471)Ryan Mulhall1-0/+8
Co-authored-by: rem1776 <rem1776@github.com>
2024-05-31dla-future: Add 0.5.0 (#44463)Raffaele Solcà1-2/+20
* add dla-future@0.5.0 * [@spackbot] updating style on behalf of rasolca * fix typo * review suggestions --------- Co-authored-by: rasolca <rasolca@users.noreply.github.com>
2024-05-31Updated version (#44461)potter-s1-0/+1
Co-authored-by: Simon Potter <sp39@sanger.ac.uk>
2024-05-31util-macros: ensure url_for_version works for older versions (#44421)Wouter Deconinck1-5/+5
* util-macros: ensure url_for_version only used for older versions * util-macros: use url.substitute_version after xz -> bz2 * util-macros: mv url_for_version down the file
2024-05-31py-junit2html: new package, version '31.0.2' (#44399)Lydéric Debusschère1-0/+23
* py-junit2html: new package, version '31.0.2' * py-junit2html: install from sources instead of from wheel
2024-05-31Bump-up rocm-opencl with 6.1.0 & 6.1.1 and adding hsa library path in ↵renjithravindrankannath2-4/+22
LD_LIBRARY_PATH (#44171) * Adding hsa library path in LD_LIBRARY_PATH * Prepending instead of setting LD_LIBRARY_PATH to hsa-rocr-dev/lib * adding rocm-opencl 6.1.0 & 6.1.1 updates
2024-05-31Updates meep to latest release 1.29.0 (#44468)Matt Schramm1-0/+1
2024-05-31Adding HPX v1.10.0 to package (#44470)Hartmut Kaiser1-0/+1
2024-05-31Changes for NVIDIA HPC SDK 24.5 (#44354)jmuddnv1-0/+10
2024-05-31fujitsu-mpi: point MPI compiler wrappers to Spack compiler wrappers (#44457)jdomke1-0/+6
Using OMPI_ environment variables, like openmpi does.
2024-05-31py-numexpr: add v2.8.8, v2.9.0 (#44451)Wouter Deconinck1-0/+3
2024-05-31petsc4py: fix typo with version (#44452)Satish Balay1-1/+1
2024-05-31protobuf: fix 3.4:3.21 patch checksum (#44443)Tom Bradford1-2/+2
2024-05-31dla-future-fortran: fix +test option (#44458)Rocco Meli1-1/+5
* Spglib: add version 2.4.0 * DLA-Future: fix +test option
2024-05-30paraview: update cuda_arch management (#44243)Alberto Invernizzi1-35/+53
* refactor logic to switch to cmake for cuda management
2024-05-30corrected the vmd 1.9.3 tarball checksum (#44433)Tom Bradford1-1/+1
2024-05-30unmaintained pkgs: bump versions 2024-05-20 (#44274)Alec Scott72-98/+166
* unmaintained pkgs: bump versions 2024-05-20 * seqkit: revert changes * msgpack-c: add dependency on boost * msgpack-c: revert to test neovim * revert: parallel, openblas, and re2c due to conflicts * gmsh: revert changing version * trilinos: limit version of suite-sparse to fix build * gtkorvo-atl: deprecate develop before remove * msgpack-c: deprecate v1.4.1 * msgpack-c: fix style --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-30Package/gettext: Old version issues (#44440)Teague Sterling1-6/+9
gcc@:5 hits https://savannah.gnu.org/bugs/index.php?65811 in gettext@0.22: also fix patch of configure script Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-05-30Bump-up the version for RoCm-6.1.1 release (#44178)Sreenivasa Murthy Kolam55-103/+628
* initial commit for RoCm-6.1.1 release * fix style issues * update the version for rocmlir and rocm-cmake * restrict the patch for 6.0.0 release * fix build failure for hipsolver-6.1.1 release * update the hipblaslt for rocm-6.1.1 release * add the patch for hipsparselt for 6.1.1 rel
2024-05-30petsc, py-petsc4py: add v3.21.2 (#44439)Satish Balay2-0/+2
2024-05-30remove platform=cray (#43796)Massimiliano Culpo81-348/+80
Remove support for `cray` as a separate platform. Any platform previously detected as `cray` is now detected as `linux`. Users who still need platform=cray have to stick to Spack 0.22
2024-05-30rocm-validation-suite: custom patch update for lib and lib64 yaml library ↵renjithravindrankannath2-20/+32
path (#44287)
2024-05-30conmon: add v2.1.12 (#44389)Wouter Deconinck1-0/+1
2024-05-29nim: add v2.0.4 (#44375)Diego Alvarez S1-3/+5
* Add nim 2.0.4 * Use install instead of copy --------- Co-authored-by: dialvarezs <dialvarezs@users.noreply.github.com>
2024-05-29Patch to add hsa prefix/include path (#44334)renjithravindrankannath3-15/+17
* Patch to add hsa prefix/include path:wq * Style check error fix * The patch need to be applied to 2024.01.stable. ROCm 6.0 requires hpctoolkit 2024.01.1 or later * Fixing style chec error
2024-05-29Update py-pyspark and py-py4j (#44263)Teague Sterling10-22/+151
* Adding a py4j variant that requires Java via spack to avoid situations where a system doesn't have Java and py4j expects it * Adding new versions of py-pyspark * Adding a new variant to require java (via py4j) and clean up dependency handling * Adding myself as a maintainer for py-pyspark and py-py4j * Fix overlooked version bump in py4j * Version bump to meet py-spark expectations * Version bump to add latest compatibile version with pyspark * Matching py-grpcio bump * Adding variants and dependents for pyspark * Adding runtime deps * Changing default java requirement. I'm not sure this is the right call * Changing py4j with java dependency handling * Fix style * Update package.py fix unnecessary f-strinh * Make +java the default for both * Fix nested deps * Revert styles after default change * Added new versions and GCC 14 compatbility conflicts * Added new versions and compatibility conflicts for gcc 14 * Added new versions paired to arrow (for gcc14 compat) * Update py-protobuf compiler conflict * Update depends to match See https://github.com/grpc/grpc/blob/master/src/python/grpcio_status/setup.py * Updating dependencies and conflicts for py-googleapis-common-protos. Added new version to avoid future issues * Remove upper bound version on py-protobuf and add default_args * Adding new versions and updating dependencies back to versions 1.35.0 * Updating oldest numpy deps * Fixing merge * bit more cleaniness for var/spack/repos/builtin/packages/py-googleapis-common-protos/package.py * Adding latest matching version of py-grpcio and py-grpcio-status * Update package.py https://github.com/spack/spack/pull/44263#discussion_r1612317943 * Update dependencies * Adding additional versions for dependent packages. Deprecated two versions: 1.16 is old, built for python ~3.6, and does not build for 3.8. 1.52.0 was removed from pypi * Revert py-grpcio-tools changes. Will include in separate PR * Adding patches and constraints to get 1.48 to build as it's a dependency that is called out for some other packages * Updating to account for yanked packages for dependencies * Fix style * Update sha256 for py-grpcio v0.16.0 to reflect change --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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