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2023-06-12etcd: add v3.5.9 (#38334)Alec Scott1-0/+1
2023-06-12fastp: add v0.23.4 (#38335)Alec Scott1-0/+1
2023-06-12opencascade: new variants (#35345)Wouter Deconinck1-30/+107
* opencascade: new variants OpenCascade has several major modules and not every application needs all of them. This adds variants for the various modules. It also uodatws the 3rdparty dependency treatment. * [@spackbot] updating style on behalf of wdconinc * Update var/spack/repos/builtin/packages/opencascade/package.py * opencascade: remove variant foundation_classes (always true) * [@spackbot] updating style on behalf of wdconinc * Update var/spack/repos/builtin/packages/opencascade/package.py --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-06-12mercury: add v2.3.0 (#38279)Jerome Soumagne1-13/+9
* fix Boost dependency * fix testing and move psm2/sockets as unsupported * fix style to separate maintainers/tags/version
2023-06-12mvapich2: add hwloc_graphics variant (#38028)MatthewLieber1-1/+5
Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2023-06-12neko: add v0.6.0 and fixed rocm package recipe (#38024)Niclas Jansson1-1/+4
2023-06-12mochi-margo: correct patch versions (#38087)willdunklin1-1/+1
2023-06-12Add new Kokkos release (#38049)Bruno Turcksin1-0/+1
2023-06-12Deprecate R packages for spatial analysis (#38158)Adam J. Stewart3-22/+110
* Deprecate R packages for spatial analysis * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-12libtlx: add v0.6.1 (#38134)Alec Scott1-0/+1
2023-06-12ccache: add v4.8.1 (#38114)Alec Scott1-0/+1
2023-06-12cdhit: add missing perl dep, patch shebangs (#38179)snehring2-0/+30
2023-06-12wrf: add v4.5.0 (#37618)MichaelLaufer3-2/+78
2023-06-12whizard: add tirpc/lib to the link flags (#38050)Juan Miguel Carceller1-2/+2
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-06-12gdb: fix debuginfod for version 10 (#38058)Manuela Kuhn1-1/+1
2023-06-12kokkos: fix c++20 constraint (#37555)Martin Pokorny1-1/+1
2023-06-12FrontISTR: relax the requirement on Trillinos (#38321)nkgh771-1/+1
2023-06-12podio: bump minimal version of catch2 (#38255)Thomas Madlener1-1/+2
2023-06-12DaV: Use VTKm for all build configurations of ParaView (#38184)kwryankrattiger1-1/+2
2023-06-12superlu: new version 6.0.0 (#38262)Wouter Deconinck1-1/+6
No changes to build system required. Changelog: https://github.com/xiaoyeli/superlu/compare/v5.3.0...v6.0.0 Since this new version adds "64-bit indexing support", and since at least one dependent package (`armadillo`) requires "32-bit integers" (https://gitlab.com/conradsnicta/armadillo-code/-/commit/faa6cbf895ba6f526473ed48779685919b36aa9f), the previous version remains preferred. * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-06-12gaudi: remove the py-qmtest dependency (#38274)Juan Miguel Carceller1-6/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-06-12orthofinder: add 2.5.5, add variants (#38298)George Young1-1/+23
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-12fastq-screen: add 0.15.3, add variants (#38288)George Young1-6/+21
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-12ltr-retriever 2.9.4 (#38300)snehring2-1/+38
2023-06-12perl-libwww-perl: adding perl-clone dependency (#38301)snehring1-0/+1
2023-06-12alglib: add v4.00.0 (#38313)Alec Scott1-0/+1
2023-06-12blogbench: add v1.2 (#38316)Alec Scott1-0/+1
2023-06-12consul: add v1.15.3 (#38317)Alec Scott1-0/+1
2023-06-11py-mypy: add 1.3.0 (#38286)Manuela Kuhn1-0/+2
* py-mypy: add 1.3.0 * Remove redundant py-typed-ast dependency * Read python@3.7 dep
2023-06-11py-deeptools: add 3.5.2, update dependency versions (#38287)George Young1-5/+7
* py-deeptools: add 3.5.2, update dependency versions * Update var/spack/repos/builtin/packages/py-deeptools/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Update var/spack/repos/builtin/packages/py-deeptools/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Rearranging dependencies to match setup.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-06-11py-jedi: add 0.18.2 (#38177)Manuela Kuhn1-13/+7
* py-jedi: add 0.18.2 * Add setuptools as run dependency
2023-06-11py-multidict: add 6.0.4 (#38284)Manuela Kuhn1-4/+4
2023-06-11py-mne: add 1.4.2 (#38228)Manuela Kuhn1-0/+1
2023-06-11Gxsview new version 2023.05.29 (#38310)Olivier Cessenat1-0/+3
* netpbm: new version 10.73.43 * gxsview: new version 2023.05.29
2023-06-11[py-spacy-legacy] New package (#38276)Jen Herting1-0/+18
2023-06-11[py-spacy-loggers] new package (#38275)Jen Herting1-0/+18
2023-06-11[py-langcodes] new package (#38273)Jen Herting1-0/+18
2023-06-11py-nbclassic: add 1.0.0 and py-notebook-shim: add 0.2.3 (#38289)Manuela Kuhn2-4/+5
2023-06-11New version for openCARP packages, v13.0 (#37940)Marie Houillon4-16/+36
* New version for openCARP packages * Update carputils dependencies * Update types of openCARP dependencies * Add type "run" to setuptools dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add package py-common as carputils dependency * Add setuptools dependency for py-common * Remove spaces on blank line * Restrict type of dependency setuptools to "build" Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: openCARP consortium <info@opencarp.org> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-11py-pybktree: new package (#38209)George Young1-0/+17
* py-pykbtree: new package * py-pybktree: new package --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-11py-pandas: exchange import_modules with skip_modules (#38227)Manuela Kuhn1-11/+1
2023-06-11py-more-itertools: add 9.1.0 (#38229)Manuela Kuhn1-7/+4
2023-06-10slurm: add new version(23.02.2, 22.05.9) (#38285)kjrstory1-0/+2
2023-06-10Automated deployment to update package flux-core 2023-06-10 (#38308)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-06-10Add new Podman package versions and fix patch (#38234)Carson Woods1-2/+4
* Add new podman versions and correct the versions which patch is applied to * Replace the existing maintainer with alecbcs at maintainers request
2023-06-09correct SHA for ABINIT 9.8.3 and add ABINIT 9.8.4 (#38283)Fabien Bruneval1-1/+2
2023-06-09[py-typer] new package (#38270)Jen Herting1-0/+21
* [py-typer] new package * [py-typer] added version 0.7.0
2023-06-09[py-catalogue] added version 2.0.8 (#38266)Jen Herting1-1/+4
2023-06-09comgr: enable testing (#35605)afzpatel1-0/+4
2023-06-09[gromacs] Fix intel (classic) libstdc++ path (#37822)Stephen Sachs1-3/+27
* [gromacs] Fix intel (classic) libstdc++ path Gromacs's `cmake` run will look for `--gcc-toolchain` (e.g. LLVM, icpx) or `--gcc-name` (e.g. icpc) in `CMAKE_CXX_FLAGS`. Only if it does not find a good g++ candidate there it will look for `GMX_GPLUSPLUS_PATH`: https://github.com/gromacs/gromacs/blob/cb6b311c39fc726a72170c4593b754c8d0a492ac/cmake/FindLibStdCpp.cmake#L97 Spack installed intel compilers already define a g++ for std libs. But in `icp{c,x}.cfg` instead of the compile line. If we use the pre-defined g++ we not only have less chance of mixing g++ versions, but also don't need to explicitly add `gcc` as dependency to `gromacs`. * Fix format * Use a variant As there is no way to check if a file exists at depends_on stage * Fix format * New name and fail if variant is used with other compiler * Line too long.
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