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* Enable Cuda for AMReX smoke test.
* style fix
* more style fixes
* change /... to join_path
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* Nalu-Wind: Allow for standard versions of trilinos
This will allow us to utilize custom numeric versions for trilinos in `spack-manager` while we continue to develop `nalu-wind`.
Pinging @eugeneswalker @jrood-nrel @tasmith4
* Update var/spack/repos/builtin/packages/nalu-wind/package.py
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* exago: query and use MPI compilers from spack
* exago: requires explicit location of mpi.h for nvcc
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* New MFEM version: 4.5
Add new MFEM variants: ginkgo, hiop
* mfem: small tweaks
* mfem: tweak testing script
* mfem: try to resolve issue #30483
* mfem: fix style
* mfem: tweak for Spack-built hipsparse
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
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Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
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(#33587)
* phist: add/update conflicts with cray-libsci and/or python@3.11: for versions <1.11.2
* phist: style fix
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(#33586)
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Update `warpx` & `py-warpx` to the latest release, `22.10`.
Update `py-picmistandard` accordingly.
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py-pyspoa) and updates to others (py-scikit-build, py-ont-fast5-api) (#33541)
* Added py-medaka and dependencies
* fixed py-parasail build error
* medaka still doesn't have correct linked libdeflate
* fixed pyspoa deps
* added htslib.patch, confirmed builds and runs
* fixed style
* Update var/spack/repos/builtin/packages/py-auditwheel/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* made requested changes
* added targets for pyspoa dep
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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/home/xsdk/spack.x/lib/spack/env/oneapi/icx -DAdd_ -Dscalapack_EXPORTS -I/opt/intel/oneapi/mpi/2021.7.0/include -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -MF CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o.d -o CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -c /home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/dgamx2d_.c
/home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/igsum2d_.c:154:7: error: call to undeclared function 'BI_imvcopy'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
BI_imvcopy(Mpval(m), Mpval(n), A, tlda, bp->Buff);
^
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Also adds 4.0 dev versions
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--Wno-error=implicit-function-declaration (#33576)
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* Add nextflow 22.10.1
* Add trailing comma (style)
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Currently the vasp package always enables the use of shmem to reduce algorithm memory usage (see
https://www.vasp.at/wiki/index.php/Precompiler_options). This is great,but on some systems gives compile errors with the interoperability of C and Fortran. This PR makes that shmem flag optional, but retains the
existing default on behavior.
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* ophidia-analytics-framework: new package at v1.7
* Fix code style in ophidia-analytics-framework
Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
Co-authored-by: Donatello Elia <eldoo@users.noreply.github.com>
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* Added support for building the DiHydrogen package and LBANN extensions
to DiHydrogen with ROCm libraries.
Fixed a bug on Cray systems where CMake didn't try hard enough to find
an MPI-compatible compiler wrapper. Make it look more.
Added support for the roctracer package when using ROCm libraries.
* Fixed how ROCm support is defined for pre-v0.3 versions.
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- hdf5-vfd-gds:
- Add new version 1.0.2 compatible with hdf5@1.13.
- CMake is a build dependency.
- Set `HDF5_PLUGIN_PATH` in the runtime environment, this plugin
is loaded dynamically.
- SDK:
- The VFD GDS driver only has utility when CUDA is enabled.
- Require hdf5-vfd-gds@1.0.2+ (1.0.1 and earlier do not compile).
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* paraview: add support for Catalyst 1 APIs
* paraview: add support for libcatalyst impl support
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* py-ncbi-genome-download: new package
* fixed style
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* chameleon: correct chameleon+simgrid build
* chameleon: remove unused declarations
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Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
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Calling `determine_variants` from the `curl` package autogenerates an empty file every time it is called.
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Also remove dependency on kokkos+wrapper
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