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2022-12-15IntelOneApiPackage: add envmods variant to toggle environment modifications ↵Sean Koyama1-2/+4
by oneapi packages (#34253) Co-authored-by: Sean Koyama <skoyama@anl.gov> Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2022-12-15metabat: adding missing build dependency (#34530)snehring1-0/+1
2022-12-15talass: fixed URLs so the package is reachable (#34387)Loïc Pottier1-2/+5
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
2022-12-15ncl: add RPC lib with ncl+hdf4 (#34451)Brian Vanderwende1-1/+12
2022-12-15Add G'MIC package with only the "cli" target available (#34533)downloadico1-0/+41
2022-12-15sundials: fix typo in smoke tests (#34539)David Gardner1-1/+1
2022-12-15podio, edm4hep: add v0.7.2 and v0.16.1 respectively (#34526)Thomas Madlener2-0/+7
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-12-15cpuinfo: new versions, shared libs (#34544)Adam J. Stewart1-29/+9
2022-12-15acts: new versions 19.11.0, 21.0.0, 21.1.0 (#34540)Wouter Deconinck1-0/+5
* acts: new versions 19.11.0, 21.0.0, 21.1.0 https://github.com/acts-project/acts/compare/v19.10.0...v19.11.0: - python 3.8 required if ACTS_BUILD_EXAMPLES_PYTHON_BINDINGS https://github.com/acts-project/acts/compare/v20.3.0...v21.0.0: - python 3.8 required if ACTS_BUILD_EXAMPLES_PYTHON_BINDINGS https://github.com/acts-project/acts/compare/v21.0.0...v21.1.0: - no build system changes * acts: depends_on python@3.8: when sometimes
2022-12-15libcint: Fix +coulomb_erf and add +pypzpx (#34524)Fabien Bruneval1-1/+7
2022-12-15lcio: add latest version (#34527)Thomas Madlener1-0/+1
2022-12-14ParaView: Add openPMD Support (#33821)Axel Huebl2-1/+13
openPMD, a metadata standard on top of backends like ADIOS2 and HDF5, is implemented in ParaView 5.9+ via a Python3 module. Simplify Conflicts & Variant Add to ECP Data Vis SDK
2022-12-14py-traitlets: add w5.7.1 (#34525)Manuela Kuhn1-0/+3
2022-12-15caliper: add version 2.9.0 (#34538)David Boehme1-2/+3
2022-12-15apptainer: add new version 1.1.4 (#34536)snehring1-0/+1
2022-12-14Patch dill._dill._is_builtin_module (#34534)Sam Grayson2-0/+39
* Patch dill._dill._is_builtin_module * Fix style * Add test
2022-12-15py-archspec: replace removed .build_directory with .stage.source_path (#34521)finkandreas1-1/+1
2022-12-14WarpX 22.11, 22.12 & PICMI-Standard (#34517)Axel Huebl3-2/+10
* PICMI: 0.0.22 * WarpX: 22.11, 22.12
2022-12-14edits to 8x existing recipes, mostly new versions, plus two dependency fixes ↵Marco De La Pierre8-4/+14
(#34516)
2022-12-14Nextflow, Tower Agent, Tower CLI: updates (#34515)Marco De La Pierre5-1/+150
* renamed tower-agent and tower-cli with prefif nf- * new nextflow package version * added newest versions (today) for nf-tower-agent and nf-tower-cli
2022-12-14New neuroscience packages: py-bmtk, py-neurotools (#34464)Erik Heeren3-0/+75
* Add py-bmtk and py-neurotools * py-bmtk: version bump * [@spackbot] updating style on behalf of heerener * Maybe the copyright needs to be extended to 2022 for the check to pass * Process review remarks * Update var/spack/repos/builtin/packages/py-neurotools/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-14bufr: add v11.6, 11.7, 11.7.1 (#34509)eugeneswalker1-0/+3
2022-12-14fms: add v2019.01.03 (#34511)eugeneswalker1-0/+3
2022-12-14justbuild: add v1.0.0 (#34467)Alberto Sartori1-0/+1
2022-12-13r-rgdal: adding new version 1.6-2 (#34502)snehring1-0/+1
2022-12-13py-submitit: add 1.4.5 (#34460)Matthias Wolf1-1/+3
2022-12-13py-tifffile: add 2022.10.10 (#34499)Manuela Kuhn1-2/+7
2022-12-13py-sphinxcontrib-qthelp: add 1.0.3 (#34495)Manuela Kuhn1-1/+3
2022-12-13py-sqlalchemy: add 1.4.45 (#34497)Manuela Kuhn1-25/+2
2022-12-13trilinos: extend range of Teuchos patch (#34504)Paul Kuberry1-1/+1
2022-12-13Update pFunit, add gFTL, gFTL-Shared, fArgParse, pFlogger, yaFyaml (#34476)Matthew Thompson6-14/+296
* Add GFE packages, Update pFUnit * Remove citibeth as maintainer per her request * Version 3.3.0 is an odd duck. Needs a v Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-12-13py-tensorboard-data-server: build needs rust+rustfmt (#34465)Bernhard Kaindl1-1/+1
2022-12-13pcre2: add new versions and update URL (#34477)Mosè Giordano1-1/+4
2022-12-13gromacs: enable linking with acfl FFT (#34494)Annop Wongwathanarat1-0/+5
2022-12-13py-cartopy: add v0.21.1 (#34482)Adam J. Stewart1-2/+4
2022-12-13libicd: macOS now supported (#34483)Adam J. Stewart1-3/+0
2022-12-13py-shapely: add v2.0.0 (#34475)Adam J. Stewart2-13/+31
2022-12-12py-pyld: add with dependency (#34472)Erik Heeren2-0/+41
* py-pyld: add with dependency * py-pyld and py-frozendict: update copyright expiration * [@spackbot] updating style on behalf of heerener
2022-12-12py-sh: new versions (#34458)Matthias Wolf1-0/+2
* py-sh: new versions * style
2022-12-12Update packages for running azure (#34403)Sam Grayson4-6/+24
* Update packages for running azure * Update py-msal-extensions * Respond to comments
2022-12-12New python package: Drishti (#33316)Jean Luca Bez1-0/+30
* include Drishti * fix syntax * Update var/spack/repos/builtin/packages/drishti/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Update var/spack/repos/builtin/packages/drishti/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12Add new package: micromamba (#34195)Sam Grayson7-0/+263
* Add new packages * wip * wip * wip * wip * wip * wip * wip * wip * style * wip * Respond to comments * Respond to comments * Spack style * Remove linkage=full_static to pass package audit * Spack style * Moved tl-expected version
2022-12-12py-sphinxcontrib-devhelp: add 1.0.2 (#34462)Manuela Kuhn1-1/+3
* py-sphinxcontrib-devhelp: add 1.0.2 * Update var/spack/repos/builtin/packages/py-sphinxcontrib-devhelp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12py-sphinxcontrib-applehelp: add 1.0.2 (#34461)Manuela Kuhn1-1/+3
* py-sphinxcontrib-applehelp: add 1.0.2 * Update var/spack/repos/builtin/packages/py-sphinxcontrib-applehelp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12GEOS: add v3.10-3.11 (#34473)Adam J. Stewart1-7/+21
2022-12-12ROCm 5.3.0 updates (#33320)renjithravindrankannath46-48/+867
* ROCm 5.3.0 updates * New patches for 5.3.0 on hip and hsakmt * Adding additional build arguments in hip and llvm * RVS updates for 5.3.0 release * New patches and rocm-tensile, rocprofiler-dev, roctracer-dev recipe updates for 5.3.0 * Reverting OPENMP fix from rocm-tensile * Removing the patch to compile without git and adding witout it * Install library in to lib directory instead of lib64 across all platform * Setting lib install directory to lib * Disable gallivm coroutine for libllvm15 * Update llvm-amdgpu prefix path in hip-config.cmake.in Removing libllvm15 from Mesa dependency removing * hip-config.cmake.in update required from 5.2 * hip-config.cmake.in update required from 5.2 and above * hip-config.cmake.in update required for all 5.2 release above * Style check correction in hip update * ginkgo: add missing include * Patching hsa include path for rocm 5.3 * Restricting patch for llvm-15 * Style check error correction * PIC flag required for the new test applications * Passing -DCMAKE_POSITION_INDEPENDENT_CODE=ON in the cmake_args instead of setting -fPIC in CFLAGS Co-authored-by: Cordell Bloor <Cordell.Bloor@amd.com>
2022-12-12julia: have recipe explicitly use Spack compiler wrapper (#34365)Glenn Johnson1-0/+8
2022-12-12Automated deployment to update package flux-core 2022-12-12 (#34456)Vanessasaurus1-0/+1
2022-12-12allow esmf to use parallelio without mpi (#34182)Jim Edwards1-2/+4
* allow esmf to use parallelio without mpi * add hash for 8.4.0 * spack no longer sets arch to cray
2022-12-12py-snowballstemmer: add 2.2.0 (#34459)Manuela Kuhn1-3/+4
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