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2020-10-19Remove version in extends (#19366)Sebastian Schmitt5-5/+9
extends expects the package name only. Cf. #12480.
2020-10-19A collection of tensorflow fixes and updates (#19371)Andrew W Elble6-8/+93
* A collection of tensorflow fixes and updates * tensorflow 2.3.1 requires the workaround for external protobuf as well * Update tensorflow-estimator to 2.3.0 * Update tensorboard to 2.3.0 * Update tensorboard-plugin-wit to use actual releases * Patch that potentially fixes #16073 * add myself to maintainer list
2020-10-19Slate package: resolves missing header issue (#19032)G-Ragghianti1-27/+29
* Changed make command to support new slate build variable 'blas=' * Updated to use package's "make install" target * Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant. * Fixed problem caused by systems which use a non-bash /bin/sh * Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas). * Fixed formating * Changed to MakefilePackage and cleaned up make argument generation * Implemented "edit" method * Removed blank line * Sqitched to using mpi compiler wrapper variables * Update var/spack/repos/builtin/packages/slate/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19r-rgeos: fix build error (#19360)darmac1-1/+1
2020-10-19openssh: new version 8.4p1 (#19358)Amjad Kotobi1-0/+1
2020-10-19anaconda3: new versions (#19357)Amjad Kotobi1-0/+2
2020-10-19Add new package: py-mido (#19355)darmac1-0/+21
2020-10-19Add new package: py-cekit (#18813)darmac1-0/+30
* Add new package: py-cekit * refine dependencies
2020-10-19Add new package: tpm2-tss (#18824)darmac1-0/+43
* Add new package: tpm2-tss * remove patch(), there's no need to use it
2020-10-19Add new package: percona-server (#18818)darmac1-0/+29
2020-10-19py-coapthon3: added new package at v1.0.1 (#18990)darmac1-0/+21
* Add new package: py-coapthon3 * remove mistake version
2020-10-19premake-core: added new package at v5.0.0-alpha15 (#18807)darmac1-0/+27
2020-10-19wsmancli: added new package at v2.6.0 (#18906)darmac1-0/+27
2020-10-19junit4: added new package at v4.13 (#18769)darmac1-0/+19
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-18butterflypack: Support fj Fortran (#17514)ketsubouchi4-0/+1137
* butterflypack: Support fj Fortran * butterflypack: split patch * butteflypack: add ieee_support_nan
2020-10-18nag: added external detection capabilities (#18153)Massimiliano Culpo1-2/+61
2020-10-18mpich: Add `external find` support (#18330)Robert Blake1-0/+106
* Adding external support to mpich * Removing debugging print statement.
2020-10-18remove package: libglvnd (#18363)Omar Padron1-44/+0
2020-10-18Add new package: vvtest (#18701)Miranda Mundt1-0/+29
* Adding vvtest to spack * Fixing flake8 failures * Adding suggestions * Removing unnecessary import * Incorporating suggested changes
2020-10-18Add new package: soci (#18816)darmac1-0/+17
2020-10-18AMD ROCm rccl - numa.h issue fix (#19317)arjun-raj-kuppala3-1/+36
2020-10-18Dataviz sdk update dep variants (#19327)Chuck Atkins2-31/+18
* ecp-io-sdk: Add preferred variants to all dependencies * ecp-viz-sdk: Add preferred variants to all dependencies
2020-10-18Revert "ipopt: Add condition for 'aarch64' to Ipopt/config.guess (#13499)" ↵Massimiliano Culpo2-13/+0
(#19341) This reverts commit e7f574aad5e89be222fbee0dff72f685f87f165c.
2020-10-18Add new package: e2fsprogs (#18763)darmac1-0/+22
* Add new package: e2fsprogs * refine setup_run_environment()
2020-10-18vdt: Removed the -mfpu=neon option for aarch64. (#18134)t-nojiri2-0/+13
2020-10-18coevp: use libquadmath only x86_64 and ppcle. (#18130)t-nojiri1-0/+7
2020-10-18dmtcp: Fix for aarch64 (#19246)t-nojiri2-0/+322
2020-10-18bash: add ssh flag (#18992)Adam J. Stewart1-0/+3
* bash: add flag on macOS * Add flag unconditionally
2020-10-18py-scipy: added v1.5.3 (#19353)Adam J. Stewart1-14/+15
2020-10-17Update libensemble to v0.7.1 (#19349)Stephen Hudson1-2/+4
* Update libensemble to v0.7.1 * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-17Removing classic flang. (#19350)Nichols A. Romero4-523/+0
2020-10-17helics: Add version 2.6.1 (#19348)Ryan Mast1-0/+1
2020-10-16Add LLVM 11.0.0 (#19309)Nichols A. Romero1-1/+2
* Add LLVM 11.0.0 * This longdouble patch was merged in.
2020-10-16gemini dep py-geneimpacts + (#19334)manifest1-0/+21
2020-10-16Fix tar detection (missing import: re) (#19338)iarspider1-0/+2
Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16Add external package support to xz (#19339)iarspider1-0/+10
* Add external package support to xz * Flake-8 Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16Add external package support to bzip2 (#19343)iarspider1-2/+13
* Add external package support to bzip2 * Flake-8 * Flake-8 part 2 Co-authored-by: iarspider <iarpsider@gmail.com>
2020-10-16New compiler: nvhpc (NVIDIA HPC SDK) (#19294)Scott McMillan1-0/+139
* Add nvhpc compiler definition: "spack compiler add" will now look for instances of the NVIDIA HPC SDK compiler executables (nvc, nvc++, nvfortran) in supplied paths * Add the nvhpc package which installs the nvhpc compiler * Add testing for nvhpc detection and C++-standard/pic flags Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2020-10-16ghostscript: add external package detection (#19346)iarspider1-0/+9
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16Fix for MKL ScaLAPACK (#19336)Pieter Ghysels1-1/+5
2020-10-16parquet-format: added new package at v2.8.0 (#18544)darmac1-0/+19
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16py-inheritance: added new package at v0.1.5 (#19337)manifest1-0/+21
2020-10-16diffutils: added support for external detection (#19344)iarspider1-0/+10
2020-10-16opium : convert to be an autotools package (#18708)t-nojiri1-4/+8
2020-10-16GenomeWorks: added new package at v0.5.3 (#19263)dunatotatos2-0/+59
2020-10-16faiss: added new package at v1.6.3 (#17290)Harsh Bhatia3-0/+1416
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-15Environments: specify packages for developer builds (#15256)Greg Becker2-0/+46
* allow environments to specify dev-build packages * spack develop and spack undevelop commands * never pull dev-build packges from bincache * reinstall dev_specs when code has changed; reinstall dependents too * preserve dev info paths and versions in concretization as special variant * move install overwrite transaction into installer * move dev-build argument handling to package.do_install now that specs are dev-aware, package.do_install can add necessary args (keep_stage=True, use_cache=False) to dev builds. This simplifies driving logic in cmd and env._install * allow 'any' as wildcard for variants * spec: allow anonymous dependencies raise an error when constraining by or normalizing an anonymous dep refactor concretize_develop to remove dev_build variant refactor tests to check for ^dev_path=any instead of +dev_build * fix variant class hierarchy
2020-10-15make opengl and spectrum-mpi set has_code = False (#19133)Omar Padron2-0/+4
* make opengl and spectrum-mpi set has_code = False
2020-10-15Update migraphx for rocm 3.8 (#19300)Sreenivasa Murthy Kolam3-4/+53
* update to migraphx for rocm_3.7.0 and rocm_3.8.0 * fix flake8 errors * address review comments * review changes * removed the msgpack,mentioned twice
2020-10-15Add new package: bdii (#18732)darmac1-0/+26
* Add new package: bdii * bdii: refine dependents
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