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2023-08-05Bugfix spack module files (#39282)Brian Van Essen2-0/+12
* Fixed the LD_LIBRARY_PATH to use the lib64 directory. * On AMD systems the llvm/lib directory is not properly put into the LD_LIBRARY_PATH. * Added both lib and lib64 paths for libfabric. * Split the prepend statements.
2023-08-04py-pyqt6: add new package (#32696)Adam J. Stewart10-77/+154
2023-08-04acts: new versions 23.[3-5].0, 24.0.0, 25.0.[0-1], 26.0.0, 27.[0-1].0, ↵Wouter Deconinck2-2/+28
28.0.0 (#37055) * acts: new version 23.[3-5].0, 24.0.0 - https://github.com/acts-project/acts/compare/v23.2.1...v23.3.0 - https://github.com/acts-project/acts/compare/v23.3.0...v23.4.0 - https://github.com/acts-project/acts/compare/v23.4.0...v23.5.0 - https://github.com/acts-project/acts/compare/v23.5.0...v24.0.0 * acts: update dependencies * acts: new versions 25.0.0, 25.0.1, 26.0.0, 27.0.0 * [@spackbot] updating style on behalf of wdconinc * acts: rm duplicate edm4hep variant definition * acts: depends_on podio 0.6: open ended range * acts: new version 27.1.0 * acts: depends_on mlpack when +mlpack * acts: new version 28.0.0 * actsvg: new version 0.4.35 * acts: depends_on actsvg@0.4.35: when @28: --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-08-04FIX libfabric module file (#39271)Brian Van Essen2-2/+12
* Add support to export the LD_LIBRARY_PATH for the libfabric package and subsequent module files. Fix the AWS OFI RCCL package so that it prepends the enviornment variables. * Fixed comment
2023-08-04[py-smartredis] New Package (#39098)Matt Drozt3-0/+247
* Create a spack package for smartredis python client * make py-SR deps versions match docs * tie SR v0.4.0 to redis-plus-plus v1.3.5 * looser extension lib deps for concretization * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Address reviewer feedback --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-04Replace code that captures a recipes generator statement in the cached (#39192)Brian Van Essen1-0/+11
cmake build.
2023-08-04Add MET, METplus packages (#39238)Alex Richert5-0/+277
* Add metplus package * Add met package * add metplus develop version * copyright year var/spack/repos/builtin/packages/met/package.py * copyright year var/spack/repos/builtin/packages/metplus/package.py --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-04 julia: add v1.9.2 (#39269)Davide1-0/+1
2023-08-03salmon: update version (#39202)pabloaledo2-0/+20
* salmon: update version --------- Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-03adios2: add 2.9.1 release (#39257)Vicente Bolea1-2/+3
2023-08-03openssl: Update to 3.1.2, 3.0.10, 1.1.1v (#39216)Erik Schnetter1-3/+18
2023-08-03sowing: add version 1.1.26-p8 (#39258)Satish Balay1-1/+4
* sowing: add version 1.1.26-p8 * add in maintainer
2023-08-03Automated deployment to update package flux-core 2023-08-03 (#39237)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-08-03hpcviewer: add version 2023.07 (#39236)Mark W. Krentel1-1/+6
Add version 2023.07, adjust the line for deprecated (anything using java 8 is now deprecated).
2023-08-03patchelf@0.18.0 breaks intel compiler libraries (#39253)Stephen Sachs1-1/+2
2023-08-03kafka: new versions (#39249)Matthieu Dorier1-0/+9
* kafka: version 2.13-3.5.0 * kafka: version 2.13-3.5.1 and 2.13-3.4.1
2023-08-03librdkafka: version 2.2.0 (#39250)Matthieu Dorier1-0/+1
2023-08-03Add checksum CI test and verify with new versions for glab and gh (#39181)Alec Scott2-0/+3
2023-08-03gftl-shared: new version 1.6.1 (#39217)Matthew Thompson1-0/+1
This PR adds gFTL-shared v1.6.1
2023-08-03mapl: add package (#39227)Matthew Thompson4-0/+279
* mapl: add package * Fix style
2023-08-03py-sphinx-rtd-theme: avoid concretizing 0.5 with Sphinx 7.0 (#39212)Seth R. Johnson1-1/+1
* py-sphinx-rtd-theme: avoid concretizing 0.5 with Sphinx 7.0 * Update var/spack/repos/builtin/packages/py-sphinx-rtd-theme/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-03Add pika 0.17.0 (#39221)Auriane R1-0/+1
2023-08-03pfunit: add versions 4.7.1, 4.7.2, 4.7.3 (#39218)Matthew Thompson1-0/+3
This adds the latest versions of pFUnit
2023-08-03vecgeom: new version 1.2.5 (#39211)Seth R. Johnson1-2/+11
* vecgeom: new version 1.2.5 * Mark previous versions as deprecated * [@spackbot] updating style on behalf of sethrj * vecgeom: fix 1.2.4 checksum for change to git describe
2023-08-03ucsc-bedgraphtobigwig: add package (#39208)pabloaledo1-0/+50
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-03R: fix build on macOS arm64 (#39228)Adam J. Stewart1-0/+2
2023-08-03ucsc-bedclip: add package (#39209)pabloaledo3-0/+81
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-03py-kornia: add v0.7.0 (#39233)Adam J. Stewart1-0/+2
2023-08-02nextdenovo: new package @2.5.2 (and py-paralleltask) (#39139)George Young2-0/+49
* py-paralleltask: new package @0.2.2 * adding hidden dependency * nextdenovo: new package @2.5.2 * style * Update var/spack/repos/builtin/packages/py-paralleltask/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-02py-melissa-core: add new versions and py-iterative-stats dependency (#38654)mschouler1-4/+13
* py-melissa-core: add new versions and py-iterative-stats dependency * Enhance dependency specification * Fix dependency specification * Fix comment alignment * Improve dependency specification style * Enhance dependencies * Fix mpi4py, py-cloudpickle and py-python-hostlist dependencies * Update var/spack/repos/builtin/packages/py-melissa-core/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-melissa-core/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-melissa-core/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Set develop version as preferred * Update var/spack/repos/builtin/packages/py-melissa-core/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-02py-libEnsemble: add v0.10.2 (#39074)Stephen Hudson1-2/+4
* libEnsemble: add v0.10.2 * Make setuptools build only dep * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-02Add qmake virtual provider (#38848)Adam J. Stewart2-0/+4
2023-08-02openmolcas: adding version 23.06 (#39195)snehring1-0/+1
2023-08-02bioconductor-dupradar, bioconductor-rsubread: add packages (#39206)pabloaledo2-0/+41
* bioconductor-dupradar, bioconductor-rsubread: add packages * [@spackbot] updating style on behalf of pabloaledo
2023-08-02tximeta: add package (#39207)pabloaledo1-0/+39
* tximeta: add package Signed-off-by: Pablo <pablo.aledo@seqera.io> * [@spackbot] updating style on behalf of pabloaledo --------- Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-02patchelf: 0.18 (#39215)Harmen Stoppels1-0/+1
2023-08-02rust: disable build from downloading a version of LLVM from Rust CI (#39146)Alec Scott1-0/+3
2023-08-02Python: fix library/header error msg format (#39171)Adam J. Stewart1-4/+4
2023-08-01dcmtk: new version and pic configuration (#39161)Martin Aumüller1-8/+15
* dcmtk: checksum 3.6.7 compiles on macos * dcmtk: support pic configuration * [@spackbot] updating style on behalf of aumuell * dcmtk: use define_from_variant for shorter code * dcmtk: refine conflict it appears that dcmtk < 3.6.7 only fails on macos/aarch64: /Library/Developer/CommandLineTools/usr/lib/clang/14.0.3/include/xmmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture" --------- Co-authored-by: aumuell <aumuell@users.noreply.github.com>
2023-08-01py-gevent: add 23.7.0 and py-greenlet: add 3.0.0a1 (#39164)Manuela Kuhn2-9/+18
* py-gevent: add 23.7.0 and py-greenlet: add 3.0.0a1 * Update var/spack/repos/builtin/packages/py-gevent/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove version 1.3.a2 --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-01py-openai, py-pandas-stubs (#38912)sid4-9/+109
* simple build of py-openai * added variants to py-openai * py-pandas-stubs is a dependency for py-openai * fixed format and flake8 errors for py-openai * black format error for py-pandas-stubs * [@spackbot] updating style on behalf of sidpbury * made style and format changes to py-openai * made style and format changes to py-pandas-stubs * py-types-pytz is a dependency for py-openai * [@spackbot] updating style on behalf of sidpbury * updated py-openpyxl for ver 3.0.7 and 3.1.2 * Update var/spack/repos/builtin/packages/py-pandas-stubs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * ajs requested changes for py-openai * updated py-openpyxl for supported python * [@spackbot] updating style on behalf of sidpbury * updated py-openpyxl * removed requirement.txt dependencies in py-openpyxl * removed python depends on from openpyxl --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-01Add two latest versions (#39182)mschouler1-0/+2
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-08-01amrex: add 23.08 (#39190)Weiqun Zhang1-0/+1
2023-08-01Mongodb: Add new package (#39085)Dax Lynch2-0/+142
* Added the package * added dependency * Update package.py * Update package.py Added xz as a dependency
2023-08-01Fix source bootstrapping for Debian and derivatives (#39107)vucoda1-1/+15
* Fix Python package.py for Debian and derivatives to find the system Python library location When bootstrapping from source, find_library() does not contain any paths that work for Debian and derivatives. fixes #36666 * Update to pass styling * Update to styling * Update python package.py with fake config value for LIBPL * Update python package.py libpl config_vars entry to follow double quote standard * styling update
2023-07-31petsc, py-petsc4py: add v3.19.4 (#39169)Satish Balay2-0/+2
2023-07-31qt-base: add conflict for 6.5+ with GCC < 9 (#39158)Martin Aumüller1-0/+3
2023-07-31py-numpy: add v1.25.2 (#39172)Adam J. Stewart1-0/+1
2023-07-31update py-cupy to enable ROCm builds and add variant to control optional ↵eugeneswalker3-15/+125
dependencies (#38919) * py-cupy updates: add +rocm and +all * rocm deps are link only * set parallelism for both +rocm and +cuda * add missing deps; remove unnecessary deps; uncomment maintainers; get hipcc properly
2023-07-31py-terminado: add 0.17.1 (#39165)Manuela Kuhn1-8/+13
* py-terminado: add 0.17.1 * Fix style * Update var/spack/repos/builtin/packages/py-terminado/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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