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2022-12-14ParaView: Add openPMD Support (#33821)Axel Huebl2-1/+13
openPMD, a metadata standard on top of backends like ADIOS2 and HDF5, is implemented in ParaView 5.9+ via a Python3 module. Simplify Conflicts & Variant Add to ECP Data Vis SDK
2022-12-14py-traitlets: add w5.7.1 (#34525)Manuela Kuhn1-0/+3
2022-12-15caliper: add version 2.9.0 (#34538)David Boehme1-2/+3
2022-12-15apptainer: add new version 1.1.4 (#34536)snehring1-0/+1
2022-12-14Patch dill._dill._is_builtin_module (#34534)Sam Grayson2-0/+39
* Patch dill._dill._is_builtin_module * Fix style * Add test
2022-12-15py-archspec: replace removed .build_directory with .stage.source_path (#34521)finkandreas1-1/+1
2022-12-14WarpX 22.11, 22.12 & PICMI-Standard (#34517)Axel Huebl3-2/+10
* PICMI: 0.0.22 * WarpX: 22.11, 22.12
2022-12-14edits to 8x existing recipes, mostly new versions, plus two dependency fixes ↵Marco De La Pierre8-4/+14
(#34516)
2022-12-14Nextflow, Tower Agent, Tower CLI: updates (#34515)Marco De La Pierre5-1/+150
* renamed tower-agent and tower-cli with prefif nf- * new nextflow package version * added newest versions (today) for nf-tower-agent and nf-tower-cli
2022-12-14New neuroscience packages: py-bmtk, py-neurotools (#34464)Erik Heeren3-0/+75
* Add py-bmtk and py-neurotools * py-bmtk: version bump * [@spackbot] updating style on behalf of heerener * Maybe the copyright needs to be extended to 2022 for the check to pass * Process review remarks * Update var/spack/repos/builtin/packages/py-neurotools/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-14bufr: add v11.6, 11.7, 11.7.1 (#34509)eugeneswalker1-0/+3
2022-12-14fms: add v2019.01.03 (#34511)eugeneswalker1-0/+3
2022-12-14justbuild: add v1.0.0 (#34467)Alberto Sartori1-0/+1
2022-12-13r-rgdal: adding new version 1.6-2 (#34502)snehring1-0/+1
2022-12-13py-submitit: add 1.4.5 (#34460)Matthias Wolf1-1/+3
2022-12-13py-tifffile: add 2022.10.10 (#34499)Manuela Kuhn1-2/+7
2022-12-13py-sphinxcontrib-qthelp: add 1.0.3 (#34495)Manuela Kuhn1-1/+3
2022-12-13py-sqlalchemy: add 1.4.45 (#34497)Manuela Kuhn1-25/+2
2022-12-13trilinos: extend range of Teuchos patch (#34504)Paul Kuberry1-1/+1
2022-12-13Update pFunit, add gFTL, gFTL-Shared, fArgParse, pFlogger, yaFyaml (#34476)Matthew Thompson6-14/+296
* Add GFE packages, Update pFUnit * Remove citibeth as maintainer per her request * Version 3.3.0 is an odd duck. Needs a v Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-12-13py-tensorboard-data-server: build needs rust+rustfmt (#34465)Bernhard Kaindl1-1/+1
2022-12-13pcre2: add new versions and update URL (#34477)Mosè Giordano1-1/+4
2022-12-13gromacs: enable linking with acfl FFT (#34494)Annop Wongwathanarat1-0/+5
2022-12-13py-cartopy: add v0.21.1 (#34482)Adam J. Stewart1-2/+4
2022-12-13libicd: macOS now supported (#34483)Adam J. Stewart1-3/+0
2022-12-13py-shapely: add v2.0.0 (#34475)Adam J. Stewart2-13/+31
2022-12-12py-pyld: add with dependency (#34472)Erik Heeren2-0/+41
* py-pyld: add with dependency * py-pyld and py-frozendict: update copyright expiration * [@spackbot] updating style on behalf of heerener
2022-12-12py-sh: new versions (#34458)Matthias Wolf1-0/+2
* py-sh: new versions * style
2022-12-12Update packages for running azure (#34403)Sam Grayson4-6/+24
* Update packages for running azure * Update py-msal-extensions * Respond to comments
2022-12-12New python package: Drishti (#33316)Jean Luca Bez1-0/+30
* include Drishti * fix syntax * Update var/spack/repos/builtin/packages/drishti/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Update var/spack/repos/builtin/packages/drishti/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12Add new package: micromamba (#34195)Sam Grayson7-0/+263
* Add new packages * wip * wip * wip * wip * wip * wip * wip * wip * style * wip * Respond to comments * Respond to comments * Spack style * Remove linkage=full_static to pass package audit * Spack style * Moved tl-expected version
2022-12-12py-sphinxcontrib-devhelp: add 1.0.2 (#34462)Manuela Kuhn1-1/+3
* py-sphinxcontrib-devhelp: add 1.0.2 * Update var/spack/repos/builtin/packages/py-sphinxcontrib-devhelp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12py-sphinxcontrib-applehelp: add 1.0.2 (#34461)Manuela Kuhn1-1/+3
* py-sphinxcontrib-applehelp: add 1.0.2 * Update var/spack/repos/builtin/packages/py-sphinxcontrib-applehelp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12GEOS: add v3.10-3.11 (#34473)Adam J. Stewart1-7/+21
2022-12-12ROCm 5.3.0 updates (#33320)renjithravindrankannath46-48/+867
* ROCm 5.3.0 updates * New patches for 5.3.0 on hip and hsakmt * Adding additional build arguments in hip and llvm * RVS updates for 5.3.0 release * New patches and rocm-tensile, rocprofiler-dev, roctracer-dev recipe updates for 5.3.0 * Reverting OPENMP fix from rocm-tensile * Removing the patch to compile without git and adding witout it * Install library in to lib directory instead of lib64 across all platform * Setting lib install directory to lib * Disable gallivm coroutine for libllvm15 * Update llvm-amdgpu prefix path in hip-config.cmake.in Removing libllvm15 from Mesa dependency removing * hip-config.cmake.in update required from 5.2 * hip-config.cmake.in update required from 5.2 and above * hip-config.cmake.in update required for all 5.2 release above * Style check correction in hip update * ginkgo: add missing include * Patching hsa include path for rocm 5.3 * Restricting patch for llvm-15 * Style check error correction * PIC flag required for the new test applications * Passing -DCMAKE_POSITION_INDEPENDENT_CODE=ON in the cmake_args instead of setting -fPIC in CFLAGS Co-authored-by: Cordell Bloor <Cordell.Bloor@amd.com>
2022-12-12julia: have recipe explicitly use Spack compiler wrapper (#34365)Glenn Johnson1-0/+8
2022-12-12Automated deployment to update package flux-core 2022-12-12 (#34456)Vanessasaurus1-0/+1
2022-12-12allow esmf to use parallelio without mpi (#34182)Jim Edwards1-2/+4
* allow esmf to use parallelio without mpi * add hash for 8.4.0 * spack no longer sets arch to cray
2022-12-12py-snowballstemmer: add 2.2.0 (#34459)Manuela Kuhn1-3/+4
2022-12-12geant4: rm preference for 10.7.3 now that 11.1.0 is out (#34445)Wouter Deconinck1-5/+1
2022-12-12[texinfo] @7.0: needs c-11 syntax (#34261)Stephen Sachs1-1/+7
gnulib/lib/malloca.c uses single value `static_assert()` only available in c-11 syntax. `gcc` seems to be fine, but `icc` needs extra flag. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-12-12MFEM: fix issue with cxxflags (#34435)Veselin Dobrev1-2/+2
2022-12-12Build tests for fmt conditionally (#34424)Mikael Simberg1-0/+3
2022-12-12Fixes to the silo packages for 4.11. (#34275)Robert Blake2-1/+16
2022-12-12stdexec: skip build phase (#34425)Mikael Simberg1-0/+3
Since it's a header-only library there's nothing to build. However, the default targets include tests and examples and there's no option to turn them off during configuration time.
2022-12-12foam-extend: add v4.1 (released Oct 2019) (#34398)Simon Flood1-0/+1
2022-12-12hdf5: "hdf5@1.13:" needs a depends_on "cmake@3.18:" for build. (#34447)Bernhard Kaindl1-0/+1
2022-12-12geant4-data: depends_on g4emlow@7.9.1 when @10.6 (#34444)Wouter Deconinck1-1/+0
Per https://geant4.web.cern.ch/node/1837 the correct dependency for 10.6 is on `g4emlow@7.9.1`, not on both `g4emlow@7.9` and `g4emlow@7.9.1`. This is a minor cosmetic fix. The concretization for 10.6 works just fine here. But this removes the duplicate entry.
2022-12-12Fix openblas build with intel compiler (#34432)Glenn Johnson2-0/+25
This PR patches the f_check script to detect the ifort compiler and ensure that F_COMPILER is iset to INTEL. This problem was introduced with openblas-0.3.21. Without this patch, the value of F_COMPILER falls back to G77 and icc rather than ifort is used for the linking stage. That results in the openblas library missing libifcore, which in turn means many Fotran programs can not be compiled with ifort.
2022-12-12arrow: dependency fixes (#33666)Jen Herting1-1/+8
+python needs more dependencies don't look for dependency spec when it's not there
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