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2020-11-12new release: cdo-1.9.9 (#19876)Brian Spilner1-0/+1
2020-11-12elpa: Fix for aarch64 (#19872)t-nojiri1-0/+3
2020-11-12xsdk@0.6.0 (#19846)Satish Balay5-14/+103
Update: hypre@2.20.0 mfem@4.2.0 superlu-dist@6.4.0 trilinos@13.0.1 datatransferkit@3.1-rc2 petsc@3.14.1 dealii@9.2.0 pflotran@xsdk-0.6.0 alquimia@xsdk-0.6.0 sundials@5.5.0 plasma@20.9.20 magma@2.5.4 amrex@20.10 slepc@3.14.0 omega-h@9.32.5 strumpack@5.0.0 pumi@2.2.5 tasmanian@7.3 phist@1.9.3 ginkgo@1.3.0 py-libensemble@0.7.1 precice@2.1.1 butterflypack@1.2.1 New: heffte@2.0.0 slate@2020.10.00 Variants: datatransferkit heffte slate petsc: enable +cuda sundials: enable +cuda +trilinos strumpack: enable +cuda
2020-11-12Package/r bigalgebra (#19826)Desmond3-0/+61
* py-json-get: new package at 1.1.1 * py-json-get: new package at 1.1.1 * r-bigalgebra: new package at 0.8.4 * r-bigalgebra: new package at 0.8.4 with corrections * Added an additional change to tarball and dependencies * removing accidentally added file * Added tarball that uses mirror and removed redundant dependencies * Fixed version and added dep. * Updated checksum * Fixed urls * Added list_url Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
2020-11-12SuperLU-Dist: Add CUDA variant (#19847)Pieter Ghysels1-2/+13
* Add CUDA support to superlu-dist * Use spec['cuda'].libs.directories[0] iso spec['cuda'].prefix.lib so it works for both lib and lib64 The suggested: args.append('-DTPL_CUDA_LIBRARIES=' + spec['cuda'].libs.ld_flags) did not work because it does not link with cuBLAS.
2020-11-12Fix scalapack build error (#19824)Jean-Paul Pelteret1-3/+14
2020-11-12kokkos add "graviton" to spack_micro_arch_map (#19869)Satish Balay1-0/+2
* kokkos add "graviton" to spack_micro_arch_map * also add "graviton2"
2020-11-11yaml-cpp: Improve shared library building (#19866)Dr. Christian Tacke1-12/+5
* No version of yaml-cpp in spack can build shared AND static libraries at the same time. So drop the "static" variant and let "shared" handle that alone. Or in other words: No version handles the BUILD_STATIC_LIBS flag. * The flag for building shared libraries changed from BUILD_SHARED_LIBS to YAML_BUILD_SHARED_LIBS at some point. So just pass both flags. * Use the newer define_from_variant.
2020-11-11msgpack-c: Add Version 3.1.1 (#19863)Dr. Christian Tacke1-0/+1
2020-11-11New package: py-cuml (#19474)Jen Herting1-0/+42
* [py-cuml] created template * [py-cuml] setup phases and added build_directory * [py-cuml] added dependencies * [py-cuml] depends on libcumlprims * [py-cuml] requiring multigpu version * [py-cuml] figuring out the best way to get concretization to happen cleanly * [py-cuml] removed singlegpu variat from libcuml * [py-cuml] depends on py-cudf * [py-cuml] depends on cupy * [py-cuml] fixed typoo * [py-cuml] depends on py-scipy * [py-cuml] depends on py-treelite * [py-cuml] py-treelite is now a variant of treelite * [py-cuml] depends on joblib * [py-cuml] depends on py-scikit-learn * [py-cuml] flake8 * [py-cuml] added homepage and description. removed fixmes * [py-cuml] updated checksum
2020-11-11Adding support to build ucx development branch (#18089)Filippo Spiga1-1/+9
* Enabling build of v1.9.x development branch. * v1.8.1 is the preferred (stable) version. * Fixing code style Co-authored-by: Filippo Spiga <fspiga@nvidia.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-11New package: libcuml (#19471)Jen Herting1-0/+45
* [libcuml] created template * [libcuml] set cmake list dir * [libcuml] added some dependencies * [libcuml] adding some default cmake args * [libcuml] depends on nccl * [libcuml] temporarily disabling cuml prims building * [libcuml] building internal faiss? * [libcuml] added dependency treelite * [libcuml] depends on google_test * [libcuml] forcing single gpu per: https://github.com/rapidsai/cuml/issues/2528#issuecomment-657675957 * [libcuml] added prims? * [libcuml] adding libcumlcomms ? * Revert "[libcuml] adding libcumlcomms ?" This reverts commit 0e0765b7d4d27bdc01d54d24e8c2f9eac1cb4eb2. * Revert "[libcuml] added prims?" This reverts commit d0b1f868ea5e425cc7d1a5ce7adc642258dfc38e. * [libcuml] added varient single gpu * [libcuml] removed variant singlegpu * [libcuml] added homepage and description. removed fixmes * [libcuml] flake8 * [libcuml] cleaning up leftover commented out code * [libcuml] updated checksum added ucx dependency
2020-11-11add spack recipe for rocm version of the tensile (#19669)Sreenivasa Murthy Kolam2-0/+92
* add spack recipe for rocm version of the tensile * fix flake8 error
2020-11-11axom: devtools require llvm clang-format (#19740)Greg Becker1-16/+4
* follow-up to previous PR * build type
2020-11-11[podio] set pythonpath correctly (#19779)vvolkl1-0/+3
* [podio] put python dir in python path * Update var/spack/repos/builtin/packages/podio/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-11suite-sparse: add versions 5.8.0 and 5.8.1 (#19812)Kai Torben Ohlhus1-1/+3
Update homepage URL and see release notes: - https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.1 - https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.0
2020-11-11arbor: Add version 0.4 (#19839)t-nojiri1-0/+3
2020-11-11Add optional deps mpmath and deap to py-libensemble (#19852)Stephen Hudson1-0/+4
2020-11-11Metall package: add v0.6 (#19854)Keita Iwabuchi1-0/+1
* Metall: add version 0.2 * Add Metall v0.3 * Update Metall package to v0.4 and v0.5. * Metall package: add v0.6
2020-11-11ace: Add version 6.5.12 (#19856)t-nojiri1-0/+1
2020-11-11openfoam: remove mplibUSER provisioning (#19861)Mark Olesen3-16/+16
- has never been used by the spack package or by the upstream package Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-11-11ROCm3.9 recipe for rocblas, hipblas & rocsolver (#19841)Ganesh Kumar3-6/+14
* ROCm3.9 recipe for rocblas, hipblas & rocsolver * review comments * review comments Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-10soapdenovo2: add 242 (#19849)Justin S1-0/+1
2020-11-10votca-xtp: update deps (#19850)Christoph Junghans1-0/+1
2020-11-10abi-dumper: Add phases (#19807)t-nojiri1-0/+2
2020-11-10py-torchvision: gather correct cuda_arch setting from py-torch (#19845)Phil Tooley1-0/+5
* py-torchvision: gather correct cuda_arch setting from py-torch dependency * py-torchvision: remove unneeded variant
2020-11-10py-scipy: set F90 for all compilers (#19818)Daryl W. Grunau1-0/+3
* set F90 when compiling with Intel * set F90 for all compilers Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-11-10[geant4] depends_on glu when +opengl (#19821)Wouter Deconinck1-0/+1
2020-11-09py-gpytorch: add v1.2.1 (#19796)Adam J. Stewart1-1/+6
2020-11-09saga-gis: add "depends_on('libsm', type='link')" (#19805)h-denpo1-0/+1
2020-11-09openblas: Add versions 0.3.11 and 0.3.12 (#19811)Kai Torben Ohlhus1-0/+2
[OpenBLAS 0.3.11](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11) and [OpenBLAS 0.3.12](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12) were released.
2020-11-09[opencascade] depends_on libxext, libxmu, libxt, libxi (#19823)Wouter Deconinck1-0/+4
* [opencascade] depends_on libxmu and libxi * [opencascade] depends_on libxext and libxt
2020-11-09Trilinos: add 13.0.1 (#19822)Satish Balay1-1/+3
2020-11-09spiral: new version 8.2.0 (#19794)Erik Schnetter1-0/+1
* spiral: new version 8.2.0 * spiral: Sort versions anti-chronologically
2020-11-09py-pygps: new package. (#19774)Toyohisa Kameyama1-0/+22
* py-pygps: new package. * fixed url.
2020-11-09py-vermin: add latest version 1.0.2 (#19820)Morten Kristensen1-1/+2
2020-11-09add sundials 5.5.0 (#19819)Satish Balay2-2/+84
(with xsdk build fixes, including mkl, superlu-dist) Co-authored-by: Cody J. Balos <balos1@llnl.gov>
2020-11-09ruby-narray: Added git master branch (#19817)Amjad Kotobi1-0/+2
2020-11-09tskit package (#19725)ilbiondo1-0/+24
* tskit package * Update var/spack/repos/builtin/packages/tskit/package.py I can't see any hard requirement for 3.6: Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fixes following PR review * Update var/spack/repos/builtin/packages/tskit/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-09ParaView: correct path for PARAVIEW_VTK_DIR (#19770)Ethan Stam1-5/+18
* ParaView: correct path for PARAVIEW_VTK_DIR * Update formatting
2020-11-08openfoam / openfoam-org : handle arch naming differences #19777 (#19778)Mark Olesen2-16/+35
- issue caused by the openfoam-org internal naming for their newly added support for aarch64 Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-11-08perl: make 5.32.0 the preferred version (#19799)Michael Kuhn1-5/+5
Version 5.32.0 has been out for quite a while and Linux distributions are shipping it. I have also done a rebuild of some common packages with the new version. Let's make it the preferred version.
2020-11-07Bash: add new patches, maintainer (#19798)Adam J. Stewart3-23/+235
2020-11-07amrex: new options names for version > 20.11 (#19769)mic841-0/+35
* amrex: new options names for version > 20.11 * amrex: change option name DIM -> AMReX_SPACEDIM * Update var/spack/repos/builtin/packages/amrex/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-07Added code to help DiHydrogen find cuDNN and CUB (#19783)Brian Van Essen4-36/+52
* Added code to help DiHydrogen find cuDNN and CUB * Cleaning up dependencies on CUB and adding guards for when newer versions of CUDA include CUB and it should be excluded. * Changed Hydrogen to disable half support by default. * Have LBANN force Hydrogen and DiHydrogen to build without half when the variant is disabled. * Added explicit variants to enusre that if LBANN is build without Cuda, Aluminum, or Half support, it enforces those constraints for Hydrogen and DiHydrogen. Cleaned up the use of Python extend versus append in LBANN and DiHydrogen recipes. * Fixed Flake8
2020-11-07fdupes: new package (#19747)Michael Kuhn1-0/+25
2020-11-07[evtgen] add env var (#19787)vvolkl1-0/+3
* [evtgen] add env var * Update var/spack/repos/builtin/packages/evtgen/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-06Add the `scorep` package dependency. (#19742)Itaru Kitayama1-0/+1
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2020-11-06fmt: Add Version 7.1.2 (#19756)Dr. Christian Tacke1-0/+1
2020-11-06fairlogger: Add Version 1.9.0 (#19758)Dr. Christian Tacke1-0/+1
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