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2019-05-17parsplice: needs LAMMPS_EXCEPTIONS (#11500)Christoph Junghans2-0/+5
2019-05-17Add version 2.5.1-alpha1 of MAGMA (#11486)Piotr Luszczek1-2/+3
2019-05-17cmake: default to +ownlibs to improve build times (#11483)Todd Gamblin1-2/+6
- CMake is built *very* frequently, and the number of dependencies it has accumulated can take a very long time on some systems. - Use +ownlibs by default to avoid the build overhead. This won't interfere with other packages by introducing conflicting libraries, as CMake is nearly always a build dependency.
2019-05-16OpenSpeedShop/CBTF package updates and fixes (#11470)Jim Galarowicz8-13/+18
This avoids using Boost 1.70.0, fixes library access in OpenSpeedShop packages, adds new versions, and updates QT dependency constraints in CBTF and OpenSpeedShop packages - Constrain Boost dependency to 1.69.0 or earlier to avoid issues with 1.70.0 for Open|SpeedShop and CBTF packages - Update DYNINSTAPI_RT_LIB environment variable to use single library from "find_libraries" (which returns a list) in OpenSpeedShop packages Fixes #11443 - Add version 1.9.3 for CBTF Argo Navis, CBTF Krell, CBTF LANL, and CBTF packages - Add version 2.4.1 for OpenSpeedShop Utils and OpenSpeedShop packages - Update QT dependency to 5.10.0 or greater for QtGraph and CBTF Argo Navis packages
2019-05-16CDO package: Fix build with gcc@9 (#11464)Michael Kuhn2-0/+212
This makes several changes to make CDO work with gcc@9: - Add version 1.9.7rc2 - Add a patch to make version 1.9.7rc2 build with gcc@9: - Add a conflict with GCC 9 for earlier versions of CDO It also adds a pkgconfig build dependency as configure checks for it.
2019-05-16Kokkos package: add debug variant (#11469)Andrew Gaspar1-0/+6
2019-05-16numpy: new version 1.16.3; update historical versions. (#11364)Chris Green1-0/+12
2019-05-16paraview: fix several dependency issues (#11432)Chuck Atkins1-2/+4
* Use externally provided mpi4py * Make mpi4py and numpy both build deps instead of only run deps * libxt is only on ~osmesa platform=linux
2019-05-16Fix CMake versions dependencies in RAJA package (#11440)David Beckingsale1-1/+2
2019-05-16Likwid: added versions 4.3.3 and 4.3.4 (#11479)Thomas Gruber1-0/+2
2019-05-16symengine: add 0.4.0, fix dependency in dealii (#11473)Denis Davydov2-1/+2
2019-05-15Update flecsi package.py (#11442)ktsai71-5/+14
* Update flecsi package.py * Update package.py * Update package.py * Update package.py
2019-05-15r-geonames: new package at 0.999 (#11455)Justin S1-0/+19
2019-05-15repeatscout: new package at 1.0.5 (#11409)Justin S1-0/+24
* repeatscout: new package at 1.0.5 * repeatscout: add trf runtime dependency * repeatscout: add nseg runtime dependency
2019-05-15r-phylostratr: new package (#11053)Justin S1-0/+34
2019-05-15r-taxizedb: new package at 0.1.4 (#11052)Justin S1-0/+28
2019-05-15r-rmysql: add 0.10.17, mariadb-connector-c dependency (#11044)Justin S1-2/+3
* r-rmysql: add 0.10.17, mariadb-connector-c dependency * r-rmysql: add dbi, mariadb version constraints
2019-05-15recon: new package at 1.08 (#11408)Justin S2-0/+635
* recon: new package at 1.08 * recon: add period * recon: use proper decorators, better documentation * recon: fix incorrect os import * recon: add repeatmasker patch as variant
2019-05-15r-rnoaa: new package at 0.8.4 (#11461)Justin S1-0/+32
2019-05-15r-isdparser: new package at 0.3.0 (#11460)Justin S1-0/+19
2019-05-15r-crul: new package at 0.7.4 (#11459)Justin S1-0/+22
2019-05-15r-httpcode: new package at 0.2.0 (#11454)Justin S1-0/+16
2019-05-15r-urltools: new package at 1.7.3 (#11458)Justin S1-0/+20
2019-05-15r-triebeard: new package at 0.3.0 (#11457)Justin S1-0/+18
2019-05-15r-curl: add 3.3 (#11456)Justin S1-0/+1
2019-05-15fix suite-sparse built with tbb from intel-parallel-studio (#11134)Denis Davydov1-1/+1
* fix suite-sparse built with tbb from intel-parallel-studio * intel: add tbb_headers, strip newline from cxx_lib * use property
2019-05-15New package: NSEG (starting at version 1.0) (#11410)Justin S1-0/+81
The source is managed as a set of files in an FTP URL. Since there are no FetchStrategy's implemented for this setup, the files are managed as a set of Resource's
2019-05-15CMake package: add dependencies (#11257)Leonhard Reichenbach3-1/+29
Add dependencies to CMake and GnuTLS which would otherwise be picked up from the system * Add gnutls as explicit dependency of CMake * Add new package libidn2 as explicit dependency for gnutls
2019-05-15parsplice: fix build (#11462)Christoph Junghans1-2/+2
2019-05-15Added setuptools to receipe (#11463)Brian Van Essen1-0/+1
2019-05-15kitty: Fix pkgconfig dependency (#11465)Michael Kuhn1-1/+1
pkgconfig is the correct virtual dependency while pkg-config is a specific implementation.
2019-05-15New package: py-pyrosar (#11428)Sinan1-0/+27
2019-05-15New package: py-spatialist (#11427)Sinan1-0/+27
2019-05-15New package: py-tblib (#11425)Sinan1-0/+18
2019-05-15New package: py-scoop (#11423)Sinan1-0/+22
2019-05-15New package: py-progressbar2 (#11421)Sinan1-0/+20
2019-05-15New package: py-python-utils (#11422)Sinan1-0/+19
2019-05-14nut: add v0.1.1 (#11444)Christoph Junghans1-2/+3
2019-05-14r-construct: new package at 1.0.3 (#11452)Justin S1-0/+29
2019-05-14r-rstan: add 2.18.2 (#11447)Justin S1-0/+7
2019-05-14r-loo: new package at 2.1.0 (#11448)Justin S1-0/+21
2019-05-15LBANN: add support for new python front end (#11395)Brian Van Essen12-17/+177
* LBANN: add python dependency and required python library dependencies * LBANN: add version 0.99 as alias for develop branch * LBANN: build Conduit library by default * LBANN: CUB is included with Hydrogen for later versions * New package: py-graphviz (dependency for LBANN) * New package: py-texttable (dependency for LBANN) * New package: py-onnx (dependency for LBANN) * New package: py-typing-extensions (dependency for py-onnx) * Conduit: add version 0.4.0 * NCCL: Add versions 2.4.6-1 and 2.4.2-1 * Protobuf: Add versions 3.7.1 and 3.7.0 * py-protobuf: add version 3.7.1 * py-typing: add version 3.6.4 * cuDNN: add versions. The source differs depending on the architecture, so the versions include a suffix to encode this. For example this adds 7.5.1-10.1-x86_64 as well as 7.5.1-10.1-ppc64le * cuDNN: Newer versions require newer versions of CUDA * Hydrogen: add configure options for CUB and Aluminum
2019-05-14gmap-gsnap: add 2019-05-12 (#11453)Justin S1-0/+1
2019-05-14r-rstantools: new package at 1.5.1 (#11451)Justin S1-0/+16
2019-05-14r-caroline: new package at 0.7.6 (#11450)Justin S1-0/+19
2019-05-14r-stanheaders: add 2.18.1 (#11446)Justin S1-0/+1
2019-05-14r-withr: add 2.1.2 (#11445)Justin S1-0/+1
2019-05-14repeatmasker: add 4.0.9, refactor interactive config (#11385)Justin S1-10/+23
2019-05-15PNetCDF package: enable option required by NetCDF (#11420)Jon Rood1-0/+3
The --enable-relax-coord-bound option was added in 1.8.0. NetCDF 4.6.3 enabled relax coords by default and required it from PNetCDF. PNetCDF 1.10.0 enabled it by default but for versions between 1.8.0 and 1.10.0 it should be enabled explicitly.
2019-05-15CUDA package: exclude compat libs (#11449)Peter Scheibel1-0/+21
CUDA 10.0 provides Compatability libraries for running newer versions of CUDA with older drivers. These do not work with newer drivers.
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