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2018-03-26Remove pmi from the fabric list. (#7226)健美猫1-3/+9
2018-03-26zeromq: fix build (#7596)Michael Kuhn1-1/+1
pkg-config is also required for release versions.
2018-03-26openssl: Add variant to use system certificates (#6396)Michael Kuhn1-0/+35
2018-03-26mpich: added version 3.2.1 (#7598)Massimiliano Culpo1-0/+1
2018-03-25new package: Seqan (bioinformatics) (#7588)Sinan1-0/+52
* new package: Seqan (bioinformatics) * add compiler requirements as conflicts * fix typo * add dependency types * correct checksum
2018-03-25python: added a variant to enable PGO + using --with-icc if compiled with ↵Massimiliano Culpo1-3/+25
Intel (#7496) Added a variant to enable default optimizations for production builds. Uses --with-icc if built with Intel compilers.
2018-03-24Add a new packag: sofa-c. (#7470)健美猫1-0/+50
2018-03-24Update copyright on LLNL files for 2018. (#7592)Todd Gamblin2540-2540/+2540
2018-03-24Add a new package: graph500. (#7499)健美猫1-0/+50
* Add a new package: graph500. * Remove leading comments. * graph500 is a MakefilePackage. * Update. * Update.
2018-03-23Only add python flag for newer versions of glib (#7579)Adam J. Stewart1-3/+4
2018-03-23Adding bc and ed packages. (#7578)Jon Rood2-0/+79
* Adding bc package. * Adding ed package which is actually a dependency of bc.
2018-03-23beast1: new package (#7544)xfzhao1-0/+47
* beast1: new package * beast1: taking suggestion
2018-03-23add matplotlib version 2.2.2 (#7572)healther1-0/+1
2018-03-23intel performance libraries: add 2018.2 (#7569)Denis Davydov4-0/+8
2018-03-23Fix tclsh command for transitive dependencies (#7566)Federico Ficarelli1-1/+9
2018-03-22Dyninst links broken, everything switched to github (#6066)Alfredo Adolfo Gimenez1-12/+7
2018-03-22mc: create new package (#7564)Matthias Diener1-0/+56
* mc: new package * Update package.py * Update package.py * Update package.py
2018-03-22[hypre] add the 'headers' property (#7278)Veselin Dobrev1-3/+21
* [hypre] Add the 'headers' property plus a small tweak in the 'libs' property. * [hypre] Add fallbacks for searching for '.libs' in 'prefix.lib64' and in all of 'prefix'. * [hypre] Fix style. * [hypre] Use find_headers instead of find + HeaderList.
2018-03-22added a new package file for PHIST (Pipelined, Hybrid-parallel Iterat… (#7361)jthies1-0/+132
* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit) * packages/phist: fix some formatting errors (too long lines etc) and set allowed values for option "outlev" * packages/phist: fix some more flake8 errors * add headers property to netlib-lapack and intel-mkl * ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers()) * added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit) * packages/phist: fix some formatting errors (too long lines etc) and set allowed values for option "outlev" * packages/phist: fix some more flake8 errors * phist: use headers property to find lapacke include dir * phist: fix flake8 error * phist: be more specific about dependencies and update version * phist: state trilinos minimum version when building with Tpetra kernels * gmp: add oldish version 5.1.3 with checksum * phist: get rid of the 'petsc+complex' variant, it can be installed by kernel_lib=petsc ^petsc+complex * phist: new version * phist: fix version checksum * Revert "add headers property to netlib-lapack and intel-mkl" This reverts commit d8cb62905ebfb2cba186fd2d736d54a88a49d089. * Revert "ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())" This reverts commit d406a77ed7879c124fbaf1d757d002b9f0771620. * phist: remove unused function * phist: reorder package file versions/variants/depends_on/rest * phist: some minor changes requested by @adamjsteward
2018-03-22perl-json: Create new package (#7431)Eric1-0/+34
2018-03-22Add py-cvxopt package (#7527)Adam J. Stewart1-0/+143
* Add py-cvxopt package * Flake8 fixes
2018-03-22Fix giflib unit tests on macOS/BSD (#7519)Adam J. Stewart2-0/+24
* Fix giflib unit tests on macOS/BSD * Unit tests occasionally fail when run in parallel
2018-03-22Add latest version of MPFR and patches for older versions (#7545)Adam J. Stewart3-178/+19
* Add latest version of MPFR and patches for older versions * Fetch and checksum patches instead of storing them * Fix bug, version attribute was being overridden
2018-03-22package/py-pyutilib: create new package (#7555)Sinan1-0/+51
2018-03-22llvm+python+lldb depends on py-six for versions 5 and up (#7056)Gregory Lee1-0/+3
2018-03-22Used names with __ in class level constructs to avoid rebinding (#7563)Massimiliano Culpo1-3/+3
fixes #3129
2018-03-22Add latest version of MPC (#7546)Adam J. Stewart1-5/+13
2018-03-22Add latest version of ISL (#7547)Adam J. Stewart1-1/+2
2018-03-22add versions 1.9.6 1.9.7 (#7562)Sinan1-0/+2
2018-03-22meme: fix errors (#6736)Levi Baber1-4/+5
* meme: added perl-xml-parser dependency, resolved issue. still need to fix ghostscript or image-magick, conversion not working. * meme: fixed issue with libxslt/libxml2 conflict, and added imagemagick support * meme: removing libxslt/libxml2 dependency lines * meme: configure args * meme: separating configure args * meme: removing a comment, and hoping for travis to rebuild. site seems back up. * meme: make image-magick optional * meme: add comment referencing PR * meme: bah flake8
2018-03-22tcl-tclxml: new package (#7557)Federico Ficarelli1-0/+58
2018-03-22Add latest version of eigen (#7530)Adam J. Stewart2-1/+31
* Add latest version of eigen * Fix bug in ptscotch detection
2018-03-22tcl-tcllib: new package (#7481)Federico Ficarelli1-0/+47
2018-03-21[MUMPS] Remove the injection of rpath_args through the inject_libsVeselin Dobrev1-4/+1
variable. This should happen automatically through the Spack compiler wrapper.
2018-03-21Opt avx (#7486)Michael Sternberg2-25/+36
* Promote to Autotools for simplicity; broaden Intel CPU opt targeting from SSE4.2 to AVX2 * make Intel CPU opt targeting same as in ../libxc * flake8 W291 * use canonical means to pass (ahem) the test phase, h/t @adamjstewart * revert f25d598 (unrelated merge) * re-merge
2018-03-21Add latest versions of bazel (#7542)Leonhard Reichenbach2-4/+34
* Add latest versions of bazel * Added java as dependency to run bazel
2018-03-21libXi requires pkgconfig and fixesproto (#7480)Eric Müller1-0/+4
2018-03-21py-pybedtools: fix hash for 0.6.9 (#7492)Levi Baber1-1/+1
2018-03-21Singularity: new version (#7551)Levi Baber1-0/+1
* singularity: new version * singularity: hash
2018-03-21perl-module-implementation: Create new package (#7549)Eric1-0/+40
2018-03-21New Package: jchronoss (#7207)Julien Adam1-0/+63
* New Package: jchronoss * jchronoss: Fix flake8 errors * jchronoss: Fix according to recommendations * jchronoss: Remove FIXME * jchronoss: Fix another flake8 error
2018-03-21r-dirichletmultinomial: Create new package. (#7227)lingnanyuan1-0/+44
* r-dirichletmultinomial: Create new package. * Change description. * Change description.
2018-03-21py-python-levenshtein: Create new package (#7426)Eric1-0/+37
* py-python-levenshtein: Create new package * py-python-levenshtein: fix flake8 errors * py-python-levenshtein: Use pypi.io per packaging guide
2018-03-21perl-cairo: Create new package (#7432)Eric1-0/+38
* perl-cairo: Create new package * perl-cairo: Add cairo dependency
2018-03-21bamutil: needs zlib (#7444)Levi Baber1-0/+2
2018-03-21package/JAGS: new version (4.3) (#7456)Sinan1-0/+1
* package/JAGS: new version (4.3) * fix typo fix typo
2018-03-21pandaseq: needs bzip and libtool as link (#7465)Levi Baber1-1/+2
2018-03-21Using self.prefix in Trilinos to avoid global name prefix undefined bug (#7478)Jon Rood1-1/+2
* Using self.prefix in Trilinos to avoid global name prefix undefined bug during module refreshing. * Fixing flake8 errors.
2018-03-21Open MPI: add 2.1.3 (#7535)Howard Pritchard1-0/+1
note the libmpi.so itself didn't have changes, only other components of the package had updates. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-03-21suite-sparse: add cmake dependency (#7538)Denis Davydov1-0/+1
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