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2021-12-24ccls: add v0.20210330 (#28111)albestro1-0/+1
2021-12-24quantum-espresso: add v7.0 (#28144)Ye Luo1-0/+6
2021-12-24neovim: add tree-sitter dependency + add v0.6.0 (#28145)albestro1-0/+6
2021-12-24py-fastprogress: new package (#28149)Jen Herting1-0/+20
2021-12-24pythia8: bugfix for pythia8 +fastjet (#28153)Wouter Deconinck1-2/+6
2021-12-24dray: add v0.1.8 and v0.1.7 (#28147)Cyrus Harrison1-0/+2
2021-12-24lordec update and gatb-core (#28119)snehring2-3/+44
* lordec: version update to 0.9 adding gatb-core as dep * gatb-core: adding new package gatb-core
2021-12-24 ParaView: add v5.10.0 (#28121)Vicente Bolea1-2/+2
2021-12-24sundials: add v6.0.0 (#28032)Cody Balos1-2/+41
2021-12-24vasp: add support for aocc (#27950)AMD Toolchain Support1-10/+60
Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-23npb package: add version 3.4.1 (#28122)kjrstory1-7/+15
* The Class F problem has been added to seven of the benchmarks (BT, SP, LU, CG, MG, FT, and EP). * The Class E problem has been added to the IS benchmark. * In version 3.4.1, 'the number of processes' option does not apply. * MPIFC and FC flags were added.
2021-12-23r-htmltools: fix version 0.5.2 (#28124)Glenn Johnson2-1/+2
The lastest version of r-htmltools needs version 1.1.0 of r-fastmap. This is not specified in the DESCRIPTION file.
2021-12-23New package: py-fastcore (#28148)Jen Herting1-0/+29
* [py-fastcore] created template * [py-fastcore] - added dependencies - added homepage - added description - removed fixmes * [py-fastcore] depends on setuptools
2021-12-23HDF5 package: change 1.10.8/1.13.0 CMake Path (#28103)Axel Huebl1-0/+5
These versions change the install location of CMake files used by dependents, but most dependents don't seem to look in this new location. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Chris White <white238@llnl.gov>
2021-12-23amber package: add ambertools21 for @20 (#28064)Jen Herting1-4/+11
* [amber] added 3 more patches for amber20 * [amber] updated dependencies for @20 (cuda, parallel-netcdf)
2021-12-23py-pymol: update package, new version 2.5.0 (#28044)Andrew W Elble2-22/+50
* py-pymol: update package, new version 2.5.0 * ensure legacy plugins still load/work
2021-12-23simgrid package: add versions 3.28 and 3.29 (#28118)Vinícius1-0/+4
2021-12-22acts: add v15.1 and record incompatibility (#27942)Hadrien G1-1/+3
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2021-12-22votca-*: merge packages into one (#28073)Christoph Junghans7-72/+129
* votca-*: merge packages into one * Update package.py * votca-*: make old version as deprecated * votca-*: mark stable deprecated as well
2021-12-22New package: py-qpth (#28047)Jen Herting1-0/+21
Co-authored-by: Doug Heckman <dahdco@rit.edu>
2021-12-22New package: tree-sitter (#28110)albestro1-0/+23
2021-12-22llvm: Fix the llvm versions for using the MicrosoftDemange patch (#28140)Bernhard Kaindl1-2/+2
2021-12-21New package: microsocks (#27859)Pat Riehecky1-0/+31
2021-12-21openfoam package: add v2112 release and latest patched v2106 (#28108)Mark Olesen1-2/+3
Also remove x86_64-only handling for Darwin
2021-12-21perl: fix macOS build (#26290)Seth R. Johnson1-1/+15
* perl: fix macOS build With both 5.34.0 and 5.32.1 the build fails on macos-bigsur-skylake %clang@12.0.5 and %clang13.0.0 : ``` 2 errors found in build log: 579013 /private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-perl-5.34.0-tpha2u52qfwaraidpzzbf6u4dbqg7dk5/spack-src/cpan/ Math-BigInt-FastCalc/../../miniperl "-I../../lib" -MExtUtils::Command::MM -e 'cp_nonempty' -- FastCalc.bs ../../lib/auto/Math/BigInt/FastCalc/Fas tCalc.bs 644 579014 579015 Everything is up to date. Type '/Applications/Xcode.app/Contents/Developer/usr/bin/make test' to run test suite. 579016 DYLD_LIBRARY_PATH=/private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-perl-5.34.0-tpha2u52qfwaraidpzzbf6u4dbqg7d k5/spack-src ./perl -Ilib -I. installperl --destdir= 579017 WARNING: You've never run 'make test' or some tests failed! (Installing anyway.) 579018 /rnsdhpc/code/spack/opt/spack/apple-clang/perl/tpha2u5/bin/perl5.34.0 >> 579019 install_name_tool: error: sh -c '/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /Applications/Xcode.app/Contents/Developer/Pl atforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -find install_name_tool 2> /dev/null' failed with exit code 256: (null) (errno=Invalid argument ) 579020 xcode-select: Failed to locate 'install_name_tool', requesting installation of command line developer tools. 579021 Cannot update /rnsdhpc/code/spack/opt/spack/apple-clang/perl/tpha2u5/bin/perl5.34.0 dependency paths >> 579022 make: *** [install-all] Error 72 ``` This is due to SYSTEM_VERSION_COMPAT being set. * perl: conditionally set SYSTEM_VERSION_COMPAT based on CLT The version of command line tools is the only difference between @alalazo and my builds: his (v11) works only when SYSTEM_VERSION_COMPAT is set to 1, and mine (v12.5 and v13) only work when it is unset.
2021-12-21structure: fixing build errors with gcc10+ removing unused dep (#28097)snehring1-2/+4
2021-12-21New package: py-onnxmltools and dependencies (#28023)iarspider8-4/+395
* New package: py-onnxmltools and dependencies * Small fix * Changes from review * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update recipe following review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-21soapdenovo2: fixing compiler errors in gcc10+ (#28098)snehring1-0/+8
2021-12-21py-build: add virtualenv variant (#28099)Adam J. Stewart1-0/+3
2021-12-21pcma: fixing compilation issues with gcc10+ (#28101)snehring1-0/+4
2021-12-21axom: add v0.6.1, fixed e4s builds (#28067)Chris White2-6/+64
2021-12-20openCARP packages: add version 8.2 (#28087)Marie Houillon3-2/+5
Co-authored-by: openCARP consortium <info@opencarp.org>
2021-12-20CDO package: add version 2.0.2 (#28086)Brian Spilner1-1/+2
Also fix URL for version 2.0.1 (sha256 is not changed)
2021-12-20New package: py-ctgan (#28050)Jen Herting1-0/+29
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-20harfbuzz package: add version 2.9.1 (#27927)Valentin Volkl1-1/+2
2021-12-20New package: py-liac-arff (#28046)Jen Herting1-0/+20
2021-12-20New package: py-rdt (#28048)Jen Herting1-0/+25
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-20New package: py-faker (#28049)Jen Herting1-0/+25
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-20aws-parallelcluster: add v2.11.4 (#28094)Enrico Usai1-2/+3
Also remove tilne from admins.
2021-12-20add sha256 sum (#28095)Anton Kozhevnikov1-0/+1
2021-12-20Intel oneAPI packages: add 2022.1.1 release (#28096)Robert Cohn14-0/+62
Co-authored-by: Egorov, Andrey <andrey.egorov@intel.com>
2021-12-20py-torchgeo: add v0.1.1 (#28082)Adam J. Stewart1-8/+6
2021-12-20nsimd: Declare missing py-chardet dependency (#28030)Erik Schnetter1-0/+1
Found by @stevenrbrandt.
2021-12-20py-nbconvert: add v6.3.0 (#28075)Adam J. Stewart1-0/+1
2021-12-20assimp: add v5.1.4 (#28079)Wouter Deconinck1-0/+3
2021-12-20py-kornia: add v0.6.2 (#28080)Adam J. Stewart1-0/+1
2021-12-20py-numpy: add v1.21.5 (#28081)Adam J. Stewart1-4/+5
2021-12-19cmake: new versions 3.22.x (#28077)Seth R. Johnson1-0/+2
2021-12-19geant4: new version 11.0.0 (preferred remains 10.7.3) (#27931)Wouter Deconinck7-4/+49
* [geant4] new version 11.0.0 * [geant4] prefer 10.7.3 for now * [vecgeom] new version 1.1.18 * [clhep] new version 2.4.5.1 * [g4emlow] new version 8.0 * [g4particlexs] new version 4.p * [geant4-data] new version 11.0.0 * [geant4] @11.0.0: cxxstd=17: ^clhep@2.4.5.1: ^vecgeom@1.1.18: * [geant4] depends_on cmake@3.16: * [geant4-data] remove g4tendl comment * [g4tendl] new version 1.4 * [geant4] default cxxstd=11 when @10, 17 when @11; use CMAKE_CXX_STANDARD * [geant4] variant tbb whe @11:, depends_on tbb, sets GEANT4_USE_TBB * [geant4] new variant vtk when @11:, depends_on vtk@8.2: * [geant4] simplify GEANT4_USE_VTK with define_from_variant * [geant4] remove variant cxxstd conditional again * [geant4] flake8 space after comma
2021-12-19Python: default to 3.9 (#27997)Adam J. Stewart5-7/+45
Both [Anaconda](https://www.anaconda.com/products/individual) and [Homebrew](https://formulae.brew.sh/formula/python@3.9) now default to Python 3.9, so Spack should follow suit. I also added Python 3.10 while I was at it. Confirmed that it builds successfully on macOS 10.15.7 with Apple Clang 12.0.0. I'm unable to test the Cray and Fujitsu patches. Fixes #27921
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