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2017-01-04zlib@1.2.10 and R do not get along, work around it (#2727)George Hartzell1-0/+1
* zlib@1.2.10 and R do not get along, work around it R's configure script has trouble with version numbers > 1.2.9. This works around it by constraining R to 1.2.8. I'm working with some R folk on getting it fixed going forward. * Add adamjstewart's change.
2017-01-03Update to latest zlib version, server no longer provides older version (#2720)Barry Smith1-1/+4
* Update to latest zlib version, server no longer provides older version Funded-by: IDEAS Project: IDEAS/xSDK * Add alternative URL for previous release of zlib
2017-01-02Fix issues when a package provides the same vdep twice. (#2710)Todd Gamblin1-0/+51
* Fix issues when a package provides the same vdep twice. - provides() now adds to a set of provided vdeps instead of a single one. * flake8
2016-12-30Add latest version of gmp (#2695)Adam J. Stewart1-4/+5
2016-12-30Fix Python issue with build failures; Add test case for build failures. (#2687)Todd Gamblin1-0/+37
2016-12-29Concretize preserves deptypes (#2681)Todd Gamblin4-0/+151
Concretization preserves deptypes
2016-12-28Directive inheritance: laziness for the win (#2623)Massimiliano Culpo4-5/+24
* inheritance of directives: using meta-classes to inject attributes coming from directives into packages + lazy directives * _dep_types -> dependency_types * using a meta-class to inject directives into packages * directives are lazy fixes #2466 * directives.py: allows for multiple inheritance. Added blank lines as suggested by @tgamblin * directives.py: added a test for simple inheritance of directives * Minor improvement requested by @tgamblin CMakePackage: importing names from spack.directives directives: wrap __new__ to respect pep8 * Refactoring requested by @tgamblin directives: removed global variables in favor of class variables. Simplified the interface for directives (they return a callable on a package or a list of them).
2016-12-28init yorick package (#2635)Thierry1-0/+81
* init yorick package * attempt at picking up SPACK's compiler choice, todo ~X variant. * sphinx docstring error ? * version# tarball, ~X default, docstring fix * sphinx docstring fix(?)
2016-12-27Cleanup post luafilesystem version de-underscoring (#2683)George Hartzell1-3/+3
The upstream luafilesystem tarball/version had a wayward/inconsistent underscore in their more recent version tag. The played badly with our package fetching machinery (due to recent changes?). Upstream cleaned up their bit which required some touchups here. - updated the url - updated the version (digest) - updated the format statement for the path to the rockspec.
2016-12-27Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark (#2627)Mayeul d'Avezac7-0/+264
* Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark Tinyxml comes in two flavors, 1 and 2. Each comes in several versions... So they cannot be easily united into a single package. * Use CMakePackage and friends, add copyright Also eleminate debug/release variants, since it no longuer fits in the CMakePackage format. * Remove unnecessary url * spdlog now has tagged releases * Remove unnecessary url argument * Fewer quotes in cmake args, because magic * Incorrect base class for tinyxml
2016-12-27Update wx to 3.1.0 (#2641)Michael Kuhn1-5/+12
2016-12-27Ensure that every file in Spack has a license (#2659)Adam J. Stewart34-25/+680
* Ensure that every package has a license Also fixes URLs with http://http:// doubled. This is a continuation of #2656. * Add license to every file in Spack * Make sure Todd is the author of all packages * Fix flake8 tests * Don't license external Sphinx docs * Don't display licenses in tutorial example packages Also fixes typos and converts command-line examples from tcsh to bash, which is more common
2016-12-25Update py-cython with new pypi.io url and new version (#2650)Matthew Scott Krafczyk1-1/+3
2016-12-25Add 64 bit variant to dealii. (#2654)Bruno Turcksin1-8/+15
2016-12-25Add latest version of Python 2 (#2668)Adam J. Stewart1-1/+4
2016-12-25Update gcc to 6.3.0 (#2669)Michael Kuhn1-0/+1
2016-12-25Update the texlive distro digest. (#2679)George Hartzell1-1/+1
sigh.
2016-12-25go: fixed GOROOT_BOOTSTRAP without workarounds (#2671)Massimiliano Culpo2-9/+5
2016-12-21Update cairo to 1.14.8, gtkplus to 2.24.31 and pango to 1.40.3 (#2642)Michael Kuhn3-8/+10
2016-12-21Bug fontconfig (#2652)Kim Serradell2-1/+4
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface * Fixed install error in cmor package * Added uuid: OSSP uuid is a ISO-C:1999 application programming interface * Fixed install error in cmor package * Modifiying fontconfig file to allow install in OpenSuse 13.2 * Adding pkg-config dependency to freetype and libxml2 * Removed first possible solution. With @adamjstewart selecting the one adding pkg-config to dependencies
2016-12-21Fix homepage for the package libspatialindex (#2656)Federico Padua1-1/+1
Small fix for the homepage of the package libspatialindex.
2016-12-19Update gdal to 2.1.2 (#2643)Michael Kuhn1-2/+3
2016-12-19Various improvements to H5hut (#2636)Adam J. Stewart1-33/+38
2016-12-19moab: changed trilinos dependency to zoltan, and added fortran variant (#2582)Andrey Prokopenko1-2/+6
Trilinos dependency is very heavy, the zoltan one is light. I'm not sure if there is a situation where one needs the former.
2016-12-19Update PnetCDF to AutotoolsPackage (#2637)Adam J. Stewart1-10/+10
2016-12-19Update digest for vim@8.0 tarball. (#2600)George Hartzell1-16/+5
* Update digest for vim@8.0 tarball. The digest appears to have changed. The new digest value matches the value in their [MD5SUMS](ftp://ftp.vim.org/pub/vim/unix/MD5SUMS) file. * Change ftp.vim.org -> github.com/vim/vim/archive Vim seems to do weekly releases, but the name of the tarball on ftp.vim.org doesn't change so we have to regularly play 'update the digest' (aka Internet whack-a-mole). This commit changes the url so that we are now downloading particular versions from the Vim project's github archive. I didn't walk back through of time to get all of the versions that used to be explicit. I grabbed the final `7.4` and the current `8.0` releases. If people need more we can add them.
2016-12-19GSL: Add latest version, update to AutotoolsPackage (#2630)Adam J. Stewart1-16/+10
2016-12-19NCO: Add latest version, update to AutotoolsPackage (#2629)Adam J. Stewart1-9/+11
2016-12-18Add gawk (GNU awk) (#2625)Todd Gamblin1-0/+45
* Add gawk, GNU awk. * flake8 fix.
2016-12-18Feature/add package for fastqc (#1573)George Hartzell2-0/+90
* Add package for fastqc This tool is a java mess. Their Way To Do It is to just copy the entire tree into it's final resting place, make the perl script at the top level executable and take it from there. Yuck. This package assumes that `set_executable` actually sets all the user bits. If that change doesn't go in, then something equivalent needs to be done. * Use chmod to make fastqc executable I haven't gotten any feedback on changing set-executable, so switch to using chmod (from the cuda package). * Flake8 cleanup * Install files neatly, don't just copy top level of dir Rather than blindly copying everything in the distribution, carefully put the necessary bits into reasonable places. Neatness counts, etc... This requires patching the `fastqc` perl script, so this commit adds a patch file. * Additional pep8 cleanup * Let dependency handle adding jdk to PATH * Flake8 cleanup * Ensure that java is on PATH I thought that the run dependency on the jdk would put java on my PATH, but it does not appear to work. For now, do it by hand.
2016-12-18Added customization for make targets in 'build' and 'install' phases for ↵Alfredo Adolfo Gimenez1-0/+6
AutotoolsPackage (#2464) * Customization for make targets in build and test phases for AutotoolsPackage * Updated Blitz++ to use customized make build and test targets * Removed flake8 error * Removed make test customization, added make install customization, need to figure out issues with multiple make targets * Changed build_targets and install_targets to normal attributes
2016-12-18py-markdown: Add new package for python-markdown. (#2611)Chris MacMackin1-0/+61
* py-markdown: Add new package for python-markdown. * py-markdown: Added restrictions on Python version. * py-markdown: Removed upper-limit on compatible Python versions. * py-markdown: Reinstated upper bound on Python version. Also fixed small formatting error.
2016-12-18gmsh: add 2.15.0 and switch to CMakePackage (#2620)Denis Davydov1-10/+7
2016-12-18tbb: add 2017.3 (#2619)Denis Davydov1-0/+3
2016-12-18cmake: add 3.7.1 (#2618)Denis Davydov1-0/+1
2016-12-17build fixes for openblas (#2601)Gregory Lee1-0/+5
* build fixes for openblas * avx2 in openblas nnot supported with older gcc * merge fix for openblas
2016-12-17dealii: fix config for Netcdf with lib64 (#2616)Denis Davydov1-2/+13
2016-12-16graphviz: fixed build error due to specifying ltdl lib but not include. (#2609)Chris MacMackin1-2/+2
* graphviz: fixed build error due to specifying ltdl lib but not include. * graphviz: Fixed dependencies on libtool and expat.
2016-12-16libmesh: added mpi variant (#2584)Andrey Prokopenko1-1/+15
2016-12-16init nfft 3.3.2 package file (#2612)Thierry1-0/+60
* init nfft 3.3.2 package file * shorten comment line
2016-12-16py-beautifulsoup4: Added version 4.5.1 (#2610)Chris MacMackin1-0/+3
2016-12-16Updating Trilinos with superlu variant and fixing git branch version ↵Jon Rood1-1/+25
options. (#2604)
2016-12-16[HACK] Make concretization great again! (#2590)Adam J. Stewart16-16/+16
* Always default to +mpi * Always default to ~X
2016-12-15openblas: derives from MakefilePackage (#2488)Massimiliano Culpo2-44/+64
* MakefilePackage: changed build_args and install_args for consistency with #2464 openblas: derives from MakefilePackage * MakefilePackage: changed default edit behavior
2016-12-15go: see #2567, temporary fix (#2588)Massimiliano Culpo1-2/+8
2016-12-15Add GNU patch to Spack. (#2598)Todd Gamblin1-0/+37
2016-12-14Blacklist flex 2.6.2 by commenting out package version (#2571)Jean-Paul Pelteret1-2/+4
Fixes #2554
2016-12-14Update texlive digest (#2591)George Hartzell1-1/+1
Texlive is *live*, they update the contents of their tarball on a whim. Here's the current one.
2016-12-13New package py-cdo (#2569)Kim Serradell1-0/+47
* Add python cdo support * Correct pypi url * Corrected a blanck space that was failing CI * Corrected url that was failing CI * Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis * Added cdo package depency
2016-12-13Merge pull request #2506 from skosukhin/pr_pythonGregory Lee1-29/+134
A couple of updates for python package.