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2022-05-08openssl: Update to 1.1.1o (#30551)Erik Schnetter1-1/+2
2022-05-09curl: New version 7.83.0 (#30552)Erik Schnetter1-0/+1
2022-05-07Add latest Lmod 8.6, 8.7 (#30542)Derek Ryan Strong1-0/+2
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-07gcc: version 12.1.0 (#30537)Harmen Stoppels1-0/+2
2022-05-07Add mochi-margo 0.9.9 (#30539)Phil Carns1-0/+1
- necessary for compatibility with upcoming Mercury 2.2.0 release
2022-05-07Addition of 1.1.9dev version for py-maestrowf (#30523)Francesco Di Natale1-13/+18
* Addition of 1.1.9dev version. * Small style fix -- extra blank line. * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Additional dependencies and version constraints. * Revert to py-poetry. * Remove run from cryptography (build only). Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-07Put make() inside a self.run_test call (#30536)Erik1-2/+2
2022-05-07vim: add +gtk variant to pair with +gui (#30520)Ryan Marcellino1-1/+7
* vim: add +gtk3 variant to pair with +gui * address review comments
2022-05-07nmap: fix build issue (#30429)WYF1-0/+3
2022-05-06Eigen: turn on BUILD_TESTING for build to complete (#30528)JDBetteridge1-0/+8
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-06Add sphinx-tabs package (#27698)Sebastian Schmitt2-0/+25
* Add py-docutils@0.16 * Add sphinx-tabs package * Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-06openspeedshop: fix missing import statement (#30506)Jim Galarowicz2-0/+4
2022-05-06arborx: inherit from CudaPackage, ROCmPackage (#30490)eugeneswalker1-3/+10
2022-05-06boost: add support for alternate boost-context backends (#30496)Thomas Dickerson1-0/+20
The fcontext backend is the default high-performance backend. The ucontext backend is needed when using Boost context in conjunction with ASAN. The WinFibers backend...also exists. https://www.boost.org/doc/libs/1_79_0/libs/context/doc/html/context/cc/implementations__fcontext_t__ucontext_t_and_winfiber.html
2022-05-06level-zero: add new package (#30253)Ken Raffenetti3-2/+43
Co-authored-by: Robert Cohn <rscohn2@gmail.com> Co-authored-by: Robert Cohn <robert.s.cohn@intel.com> Co-authored-by: John Mellor-Crummey <johnmc@rice.edu>
2022-05-06gdb: fix run issue with v9.2 (#30491)WYF1-0/+3
2022-05-06ci: Enable the ParaView GUI in the DAVSDK pipeline (#30473)Chuck Atkins2-0/+23
* ci: Enable the ParaView GUI in the DAVSDK pipeline * qt: Patch for long paths in ci
2022-05-06py-qrcode: new package (#30529)Seth R. Johnson1-0/+24
2022-05-06slurm: add new versions to address CVEs 2022-29500, 2022-29501 and ↵Todd Gamblin1-7/+12
2022-29502 (#30525) Due to CVE 2022-29500, CVE 2022-29501, and CVE 2022-29502, SLURM versions prior to 21.08.8 and 20.11.9 are deprecated. See: * https://www.schedmd.com/news.php?id=260#OPT_260 * https://cve.report/CVE-2022-29500 * https://cve.report/CVE-2022-29501 * https://cve.report/CVE-2022-29502 - [x] Deprecate versions prior to 21.08.8 and 20.11.9 - [x] Add 21-08-8-1, 21-08-8-2, and 20-11-9-1
2022-05-06Added a version for a tag that sets a stable version of master to pull (#30511)Brian Van Essen1-0/+1
2022-05-06Preserve jobserver file descriptors into build environment (#30302)Tom Scogland1-4/+4
This ensures that multiple spack instances called from `make` will respect the maximum number of jobs in the POSIX jobserver across packages. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-05Add two critical fixes and update for version 1.0.4 (#30507)Jim Galarowicz1-5/+11
2022-05-06flux-sched: add patch for signedness compare issue on gcc@9.40 (#30514)Mark Grondona2-0/+14
Problem: GCC 9.4.0 catches a bad integer comparison in resource/hlapi/bindings/c++/reapi_cli_impl.hpp in flux-sched@0.22.0 and current master. Add a patch to work around the problem until an upstream fix is available.
2022-05-05mpich: Add ROCm variant (#30502)Ken Raffenetti1-1/+10
* mpich: Add ROCm variant * fixup
2022-05-05updated stat build dep requirements (#30505)Gregory Lee1-2/+2
2022-05-05neko: Add version 0.3.2 (#30497)Niclas Jansson1-1/+3
* neko: Add version 0.3.2 * Switch to sha256 Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * Fix url pattern Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05Enable PyTorch 1.10.x to build on Power systems (#30494)Brian Van Essen1-0/+18
* Use patches from IBM's Open CE project to enable PyTorch to build on Power systems. Cherry-pick a patch to allow earlier versions of PyTorch to build with CUDA 11.4. * Update var/spack/repos/builtin/packages/py-torch/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-05package audit: ensure stand-alone test method not include in build-phase ↵Tamara Dahlgren1-2/+2
testing (#30352)
2022-05-05clingo: add v5.5.2 (#30495)Massimiliano Culpo1-12/+14
* clingo add v5.5.2 * Unify dependencies for @spack and @master
2022-05-05Update totalview package.py with new version and maintainer (#30341)David1-3/+22
* Update totalview package.py with new version and maintainer * Update totalview/package.py version order Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05Bug fix for mesa-glu: if gl is provided by mesa, need to specify argument to ↵Dom Heinzeller1-0/+6
./configure (#30082)
2022-05-05octopus: update to 11.4 and add tests (#30321)Hans Fangohr3-30/+245
* octopus: adding versions up to 11.4 * octopus: add smoke tests * octopus: add necessary flags for gcc@10 * octopus: update to compilation and dependencies * octopus: adding new variants * octopus: remove 'poke' (as this poke is not in spack [yet]) * octopus: allow compilation from git repo develop branch * octopus: adapt to spack style requirements * octopus: add maintainer * octopus: make tests after install optional Thank you @tldahlgren * octopus: follow recommended practice for test input data Move the two configuration files we use for smoke tests into `test` subdirectory. Thanks @tldahlgren. * Adding maintainer with their agreement by email * octopus: reduce duplication of flags - part of code review * octopus: https is preferred over http * octopus: remove .99 from versioning information Thanks to https://github.com/spack/spack/pull/26402, we can drop the "2:3.99" notation when we mean all versions 2.x and 3.x Examples: https://github.com/spack/spack/commit/b9e72557e8b52b63244500f226afda0efe798df2#diff-b8373d30b3a141c495c2281273ee6184fc513413142afaf2adac1f406cd6b0d7 (from review) * octopus: args.extend([x]) -> args.append(x) (hint from review)
2022-05-05yaksa: Add support for cuda_arch variants (#30471)Ken Raffenetti1-0/+5
2022-05-05ucx: overhaul package recipe (#30215)Harmen Stoppels1-138/+108
- hyphens to underscore in variant names (e.g. `~ib_hw_tm` instead of `~ib-hw-tm`) - disable docs, disable go, drop the unused `doc` variant - `+static +shared` => `libs=static,shared` - `vfs` support (add libfuse@3: dep) - fix `backtrace_detail` for UCX 1.12+ (`--enable-backtrace-detail` => `--with-bfd`) - group variants and sort
2022-05-05baurmc: add new package (#30245)Valentin Volkl1-0/+43
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05git: adding subtree support, post-install step, reordered deps (#30400)Jennifer Green1-6/+18
2022-05-05LAPACK: add API compatibility versions (#29828)Adam J. Stewart6-1/+16
2022-05-05rnaz: add version 2.1.1 and git repository to newest version. (#30349)dlkuehn1-0/+7
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05trimmomatic: adding more flexible java dep (#30488)snehring1-1/+2
2022-05-05flatbufffers: patches are in v2.0.0 (#30492)Wouter Deconinck1-2/+2
2022-05-05spectre: add v2022.05.05 (#30493)SXS Bot1-0/+1
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-05-04qt: fix ~opengl and use_spack_dep (#30487)Seth R. Johnson1-13/+16
2022-05-04UPC++: minor packaging improvements (#30482)Dan Bonachea1-0/+36
* upcxx: Add `spack external find` support * upcxx: Minor tweaks to Shasta support
2022-05-04Add scitokens-cpp recipe and also as a variant for xrootd (#30362)Andrea Valenzuela2-0/+33
* Add scitokens-cpp recipe * Add scitokens-cpp variant in xrootd * Fix typo * Fix flake8 style errors * Update license date Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-04Fix professor recipe (#30002)iarspider1-1/+13
* [WIP] Cleanup professor dependencies * Add dependency on ROOT * Remove direct dependency on wxwidgets * `prof-I` tool requires matplotlib with wxwidgets backend, made that optional * Update package.py * Update package.py (#38) * Update package.py * Update package.py
2022-05-04Update gtk-doc depends for tce findings (#30337)David1-1/+2
gtk-doc can call pkg-config when used at runtime, so pkgconfig needs to be a runtime requirement. itstool needs to be a build-time requirement.
2022-05-04gxsview: vtk9 no longer builds libvtkjpeg... (#30340)Olivier Cessenat2-0/+28
2022-05-04Add checksum for py-prompt-toolkit@3.0.29 (#30330)Andrea Valenzuela1-0/+1
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04curl: tls=mbedtls requires fPIC (#30447)Carlos Bederián1-2/+2
2022-05-04gatk: updating and expanding java dependency (#30476)snehring1-1/+4