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2020-03-19update attr version to 2.4.48 (#15535)darmac1-2/+12
* update attr version to 2.4.48 * attr: remove redundant make() in install()
2020-03-19amdblis + blis: fix spack info and libs query (#15566)Toyohisa Kameyama2-0/+5
2020-03-18py-matplotlib: add 3.2.1 (#15560)Adam J. Stewart1-1/+2
2020-03-18hpctoolkit: restore binutils 2.34 for master (#15556)Mark W. Krentel1-3/+4
Hpctoolkit master was recently updated to test for and allow old binutils <= 2.33.1 and/or new binutils 2.34. Older hpctoolkit up to 2030.03.01 will forever require :2.33.1. Adjust the libunwind dependency for safety with the current concretizer.
2020-03-18Split: Fabtest/libfabric (#15557)Axel Huebl2-71/+21
Fabtests provides runtime analysis tools and examples of libfabric. As with other projects that are tightly version-bound, e.g. `py-adios` and `adios`, the fact that releases stem from the same repo does not imply they should be the same package. Remove resources, which complicate the libfabric build, and update the fabtests package accordingly.
2020-03-18Trilinos: Add more variants (~netcdf ~matio ~glm) (#15483)Kelly (KT) Thompson1-8/+25
* Trilinos: Add more variants + Provide three new variants to allow building trilinos without netcdf, matio, or glm. + No change to defaults. * Fix style issue.
2020-03-18Tuiview movetogithub (#15498)Neil Flood1-4/+6
* py-tuiview: Source has moved to github * py-tuiview: Explicitly require +python on gdal dependency * py-tuiview: Versions up to 1.1.99 are qt4 only * py-tuiview: Add version 1.2.6, which is qt5 only * Explicit version range on gdal dependency
2020-03-18petsc@3.7 fix dependency of superlu-dist@5.1.3 (#15551)Satish Balay1-2/+2
2020-03-18py-horovod: set appropriate build env vars (#15548)Adam J. Stewart3-44/+106
* py-horovod: set appropriate build env vars * mxnet: add maintainer * py-horovod: fetch git submodules * py-torch: fix CUDA conflicts
2020-03-18modified spackage for flecsi and cinch (#15555)ktsai72-5/+7
2020-03-18adol-c:updating sources location (#15532)gauthier121-8/+13
* adol-c:updating sources location * Update var/spack/repos/builtin/packages/adol-c/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-18package/QGIS: fix cmake/FindPyqt.py (#15455)Sinan2-0/+27
* fix cmake/FindPyqt.py * apply patch * generalize patch * rename patch * fix typo Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-03-18Use python extend_path as pyqt sip fix (#15297)Sinan3-5/+29
* try extend path to solve PyQt5.sip not found issue * disable private sip installation in sippackage class * undo manual PyQt5 dir creation in py-sip site-packages dir * fix typo * fix typo * also apply fix to PyQt4 * tidy up * flake8 and tidy up * tidy and undo hardcoding of python_include_dir * replace hardcoded python inc dir * fix minor issues * rethink include dir variable name * improve style * add new versions * implement new sip setup to qsci installation * set sip-incdir correctly for the new setup * setup extend_path thing before qsci python bindings * take care of conflict * flake8 * also extend for PyQt4 * improve style * improve style * SipPackage build sys should depend on py-sip * consolidate extend_path fixes into SipPackage * fix typo * fix bugs * flake8 * revert sip doc to pre-resource setup * import os module * flake8 Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-18revbayes: Update pre-build process (#15485)Nick Booher1-0/+5
2020-03-18Cctools 7.1.0 (#15506)Benjamin Tovar1-12/+41
* update to 7.1.0 * adds gettext as dependency (needed to link with python) * disable python2 or python3 as needed
2020-03-18add new package: acl (#15514)darmac1-0/+30
2020-03-18add new package: userspace-rcu (#15515)darmac2-0/+44
2020-03-18CGNS: Version update (#15523)Greg Sjaardema1-1/+8
* CGNS: Version update The CGNS library has several new versions. There was a format-changing change in 3.4.0 which was removed for 3.4.1. The change was then added again and released with a change to the major version (4.0.0). Note that 4.0.0 should be close to the functionality of 3.4.0. * CGNS: Add shared variant Added the `shared`variant to make the CMake build correctly pick up the RPATH settings.
2020-03-18update util-linux to version: 2.33:2.35.1 (#15529)darmac1-0/+4
2020-03-18triangle: add X11 dependency. (#15533)Toyohisa Kameyama1-0/+2
2020-03-18xsetpointer: fix wrong dependency type. (#15534)Toyohisa Kameyama1-3/+3
2020-03-18adding the fortran option for hdf5 dependency for comptatibility with petsc ↵gauthier121-1/+1
requirement (#15536)
2020-03-18xts: add some dependencies. (#15537)Toyohisa Kameyama1-8/+11
2020-03-18Remove trailing newline. (#15539)Robert Kalescky1-0/+5
2020-03-18r-openssl requires C99. (#15541)Robert Kalescky1-0/+5
2020-03-18py-numpy: add 1.18.2 (#15546)Adam J. Stewart1-1/+2
2020-03-18Add package anaconda3 (#15404)Amjad Kotobi1-0/+53
2020-03-18Added a package for the DiHydrogen distributed linear algebra library. (#15426)Brian Van Essen1-0/+111
* Added a package for the DiHydrogen distributed linear algebra library. * Updated recipe to provide cuda architecture constaints. * Addressed reviewer comments * Fixed flake 8
2020-03-18QMCPACK Update March 2020 (#15511)Nichols A. Romero1-5/+17
* Clean-up description of variants. * Support AFQMC with CUDA.
2020-03-18openPMD-api: HDF5 1.12.0 Support (#15530)Axel Huebl2-0/+27
Fix API breakage in HDF5 1.12.0 for released versions.
2020-03-18Previous qt package file changes broke the openspeedshop gui build. (#15471)Jim Galarowicz2-2/+3
* Previous qt changes broke the openspeedshop gui build. This puts back the changes that caused the breakage. * Update the qt version to be more robust. Co-authored-by: Galarowicz, James <jgalarowicz@newmexicoconsortium.org>
2020-03-17update checksum for intel-tbb@2020.1 (#15528)eugeneswalker1-1/+1
2020-03-17SEACAS: Add versions 2020-03-16 and 2020-01-16 (#15525)Greg Sjaardema1-0/+2
2020-03-17MPICH: optional libxml2 support; NAG patches (#15235)Sergey Kosukhin5-2/+222
* Add patches when building with NAG * Make libxml2 support optional. Also include conflict for @:3.2~hydra+libxml2 since @:3.2~hydra does not require libxml2 support * Add '--disable-silent-rules' to get more verbose output during the build
2020-03-17Corrected compiler filtering for TAU makefiles (#15342)wspear1-2/+20
* Implemented working file filtering to replace spack compiler wrapper with real compiler. * Using string=True instead of re.escape. Using self.prefix.lib instead of appending /lib. Co-authored-by: Wyatt Spear <wspear@cs.uoregon.edu>
2020-03-17geant4: Removed unnecessary definition of xerces-c. (#15513)Tomoki, Karatsu1-1/+0
2020-03-17Update and exetend VecGeom (#14520)Seth R. Johnson1-32/+79
* Add new vecgeom versions, add cuda support, automate target options * Add ROOT, GDML, and external VecCore support to VecGeom * Address reviewer comments * Update vecgeom for CUDA * Update versions
2020-03-17nfs-utils: added package at v2.4.2 (#15491)darmac1-0/+34
2020-03-16cap binutils version @:2.33.1 due to build failures with 2.34 (#15504)eugeneswalker1-1/+1
2020-03-16veccore: added package at v0.6.0 (#15472)Seth R. Johnson1-0/+40
2020-03-16CMakePackage: convert variants to CMake arguments (#14376)Seth R. Johnson1-0/+8
Add a 'define_from_variant` helper function to CMake-based Spack packages to convert package variants into CMake arguments. For example: args.append('-DFOO=%s' % ('ON' if '+foo' in self.spec else 'OFF')) can be replaced with: args.append(self.define_from_variant('foo')) The following conversions are handled automatically: * Flag variants will be converted to CMake booleans * Multivalued variants will be converted to semicolon-separated strings * Other variant values are converted to CMake string arguments This also adds a 'define' helper method to convert any variable to a CMake argument. It has the same conversion rules as 'define_from_variant' (but operates directly on values rather than requiring the user to supply the name of a package variant).
2020-03-16silo: depends on hdf5@:1.10.999 (#15495)Erik Schnetter1-0/+1
Silo does not build with HDF5 1.12.
2020-03-16tixi: added package at v3.0.3 (#15490)Melven Roehrig-Zoellner1-0/+24
2020-03-16swig: added v4.0.1 (#15496)Erik Schnetter1-0/+1
2020-03-16ncurses: added v6.2 (#15494)Erik Schnetter1-0/+1
2020-03-16cmake: added v3.16.5 (#15492)Erik Schnetter1-0/+1
2020-03-16unqlite: added package at v1.1.9 (#15501)Matthieu Dorier1-0/+18
2020-03-15gcc: Don't apply macOS 9.2.0 patch for 9.3.0 (#15493)Erik Schnetter1-1/+1
The patch neither applies nor is necessary.
2020-03-14Limit binutils to <= 2.33.1 (#15470)Tim Haines1-1/+1
HPCToolKit <= 2020.03.01 does not build with binutils 2.34.
2020-03-13LIBXSMM 1.15 (#15482)Hans Pabst1-2/+3
* LIBXSMM 1.15 * LIBXSMM: renamed development version according to the related branch on GitHub.
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