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2017-12-18globus-toolkit: add version and openssl dependency (#6617)Benedikt Riedel1-0/+3
2017-12-18relion - added new stable version 2.1 (#6706)Douglas Duckworth1-5/+2
2017-12-17fix post install method for py3 in mercurial (#6497)healther1-3/+5
* fix post install method for py3 in mercurial * Update package.py * Update package.py * use print_str instead of manual print detection * Update package.py * use only depends_on * Update package.py * Update package.py State py3 compatibility for @4.3: according to setup.py from the 4.3.tar.gz from pypi
2017-12-16Package 'cdo': get rid of unnecessary dependency on MPI C++ library. (#6632)Sergey Kosukhin1-2/+9
2017-12-16Add new package signify (#6645)nshtg1-0/+39
OpenBSD tool to sign and verify signatures on files. See https://github.com/aperezdc/signify
2017-12-16breseq: Create new package (#6648)Eric1-0/+44
2017-12-16build lapacke with tmg (#6654)fpruvost1-1/+4
2017-12-16bwa: added version 0.7.16a and checksum (#6658)David Orman1-0/+2
2017-12-16Hadoop: Replace broken url (#6671)Jack Morrison1-2/+2
2017-12-16Caliper update, add version 1.6.0 (#6680)David Böhme1-4/+17
2017-12-16py-bx-python: Create new package (#6672)Eric1-0/+39
2017-12-16py-tetoolkit: Create new package (#6673)Eric1-0/+42
2017-12-16py-pandas: add versions 0.19.2 and 0.21.1 (#6687)Eric1-0/+2
2017-12-16Add petsc version 3.8.3 (#6688)Paschalis Korosoglou1-0/+1
2017-12-16Add clanguage variant for petsc (#6689)Paschalis Korosoglou1-0/+8
2017-12-16bedtools2: Add version 2.27.1 (#6693)Eric1-0/+1
2017-12-16MetaSV: adding new package (#6691)peetsv1-0/+39
2017-12-16PANDAseq: Create new package (#6694)Eric1-0/+48
2017-12-16DeNovoGear: Create new package (#6699)Eric1-0/+43
2017-12-16mefit: Create new package. (#6700)lingnanyuan1-0/+47
2017-12-16moltemplate: add new package (#6702)Denis Davydov1-0/+38
2017-12-15new package: gatk (#6674)David Orman2-0/+91
2017-12-14new package: Percept (#6636)Jon Rood4-0/+151
This also adds the 'exception' boost library to the set of default libraries built by boost.
2017-12-14added breakdancer (#6319)Douglas Duckworth1-0/+47
2017-12-14fftw: added version 3.3.7 (#6678)Massimiliano Culpo1-0/+1
2017-12-14Add TIOGA package and optional dependency of Nalu on TIOGA (#6638)Jon Rood2-0/+64
2017-12-14libharu: Make dependencies on zlib and libpng explicit (#6682)Scott Wittenburg1-0/+13
2017-12-13relion: add version and cuda arch variant (#6317)Douglas Duckworth1-1/+20
Add preferred version 2.0.3. Added beta version. Added conflict with gcc versions >= 5 when building with cuda@8 (which is currently the only supported cuda version). Added cuda architecture variant. Added comment about current lack of cuda@9 support.
2017-12-13tasmanian: add new package (#6659)Denis Davydov1-0/+36
2017-12-13CUDA: 9.1 (#6663)Axel Huebl1-1/+4
Add the latest CUDA release, 9.1
2017-12-13py-pysam: adding old version 0.7.7 (#6675)peetsv1-0/+1
2017-12-13SPAdes: add version 3.11.1 (#6668)Eric1-0/+1
2017-12-13 picard: added version 2.13.2 (#6669)David Orman1-0/+1
2017-12-12new packages: biopieces and dependencies (#6478)Audrey Thoma47-13/+1784
This also adds the tcl, tk, and libx11 dependencies to ruby. All other changes are new packages.
2017-12-12laghos: inject CXX (#6664)Christoph Junghans1-0/+1
2017-12-12swfft: inject CC/CXX (#6666)Christoph Junghans1-0/+11
2017-12-12xsdk: update xsdk@develop to use sundials, plasma, magma (#6649)Satish Balay1-1/+6
Also update xsdk@0.3.0 to use a fixed version of magma
2017-12-11Add new package minisign (#6644)nshtg1-0/+36
A dead simple tool to sign files and verify signatures. See https://jedisct1.github.io/minisign
2017-12-11libsodium: Update to 1.0.15 (#6643)nshtg1-0/+1
2017-12-11git: Update to 2.15.1 (#6642)nshtg1-0/+5
2017-12-11openssl: Update to 1.0.2n (#6641)nshtg1-1/+2
From 07.12.2017, fixes CVE-2017-3737
2017-12-11Py h5py update (#6635)Brian Van Essen1-0/+2
2017-12-11intel-parallel-studio: restrict patch to versions > 2016 (#6523)健美猫1-4/+5
Fixes #6522 Patch psxevars.sh and psxevars.csh only when year > 2016. pxevars.csh does not exist for versions before 2017. psxevars.sh does not appear to require this patch for versions before 2017.
2017-12-11bazel: include SPACK_DEBUG_LOG_ID in environment (#6562)Johann Klähn2-2/+12
Fixes #6521. Bazel's build system filters environment variables, including those set by Spack for use by its compiler wrapper. This updates the patch to include the SPACK_DEBUG_LOG_ID variable added in #5837.
2017-12-10disable plasma in xsdk 0.3.0 (#6621)Satish Balay1-1/+0
2017-12-10Fix reference to self.versions in neovim package (#6639)Adam J. Stewart1-1/+1
2017-12-08updates to conduit and ascent packages (new PR) (#6584)Cyrus Harrison3-30/+76
* optional path to use spacks py-site-pkgs, install host-cfg for provenance * add more comments and address review requests * only use st-pkgs-dir when +python * ascent does not need doxygen * capture mpiexec if it exists * added missing import * flake8 fix * default adios variant to False * ascent develop now reqs conduit master * optional path to use spacks py-site-pkgs, install host-cfg for provenance * add more comments and address review requests * only use st-pkgs-dir when +python * ascent does not need doxygen * capture mpiexec if it exists * added missing import * flake8 fix * default adios variant to False * ascent develop now reqs conduit master * conduit: use hdf5 1.8 for wider output compat
2017-12-08Relax restriction on lua version. (#5886)Chris Green1-1/+1
2017-12-08Add NekCEM package to spack (#6509)Thilina Rathnayake1-0/+90
2017-12-08Update the Nekbone package (#6508)Thilina Rathnayake1-21/+36
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