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2022-11-17Hdf5 package: build on Windows (#31141)Jared Popelar4-20/+91
* Enable hdf5 build (including +mpi) on Windows * This includes updates to hdf5 dependencies openssl (minor edit) and bzip2 (more-extensive edits) * Add binary-based installation of msmpi (this is currently the only supported MPI implementation in Spack for Windows). Note that this does not install to the Spack-specified prefix. This implementation will be replaced with a source-based implementation Co-authored-by: John Parent <john.parent@kitware.com>
2022-11-17Update CMake version to 3.25.0 (#33957)John W. Parent1-0/+1
CMake had official release 3.25.0, update package version to reflect Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-17Waf build system: fix typo in legacy_attributes (#33958)Chris Green1-2/+0
Fix erroneous duplication of `build_time_test_callbacks` in `legacy_attributes`: one of the duplicates should be `install_time_test_callbacks`
2022-11-17Python: do not set PYTHONHOME during build (#33956)Massimiliano Culpo1-6/+1
Setting PYTHONHOME is rarely needed (since each interpreter has various ways of setting it automatically) and very often it is difficult to get right manually. For instance, the change done to set PYTHONHOME to sysconfig["base_prefix"] broke bootstrapping dev dependencies of Spack for me, when working inside a virtual environment in Linux.
2022-11-17py-rasterio: add v1.3.4 (#33961)Adam J. Stewart1-2/+4
2022-11-17Octopus : Separate serial and MPI dependencies (#33836)Ashwin Kumar1-7/+30
* replace mpi as a variant instead of dependency * separate serial and MPI dependencies * configure args depending on serial or mpi variant * reformat with black
2022-11-17py-torchmetrics: add v0.10.3 (#33962)Adam J. Stewart1-0/+1
2022-11-17Python: fix bug detection, trying to access self (#33955)Massimiliano Culpo1-1/+1
Typo introduced in #33847
2022-11-16zlib, openssl: return to `http` URLs (#33324)Ben Boeckel2-2/+2
In #3113, `https` was removed to ensure that `curl` can be bootstrapped without SSL being present. This was lost in #25672 which aimed to use `https` where possible. Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-16[xz] icc does not support attribute __symver__ (#33839)Stephen Sachs1-0/+4
xz have added attribute __symver__ for compilers that identify as GCC>=10.0 via __GNUC__. Intels `icc` sets __GNUC__ but currently does not support this attribute: https://community.intel.com/t5/Intel-C-Compiler/symver-not-supported/m-p/1429028/emcs_t/S2h8ZW1haWx8dG9waWNfc3Vic2NyaXB0aW9ufExBQVRWMjIyUFFZTlZTfDE0MjkwMjh8U1VCU0NSSVBUSU9OU3xoSw#M40459
2022-11-16serialbox: update patch to handle UTF-8 conversion errors (#33317)Sergey Kosukhin2-7/+32
2022-11-16py-jupyter-server: add 1.21.0 (#33310)Manuela Kuhn1-2/+7
2022-11-16py-jupyterlab: add 3.4.8 (#33308)Manuela Kuhn1-5/+9
2022-11-17blast-plus: update to 2.13.0 and add cpio as build dependency (#33187)Christian Kniep1-1/+4
2022-11-17* ninja: Set min. required version of re2c dependency, fixes #33127 (#33128)Sebastian Grabowski1-0/+1
Reviewed-by: haampie, bernhardkaindl
2022-11-17gettext: On ppc64le, for older versions, use system cdefs.h (#33411)Jonathon Anderson1-0/+7
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-16updated v2.11.8 (#33944)chenwany1-2/+4
2022-11-16initial implementation of slingshot detection (#33793)Greg Becker1-2/+3
2022-11-16qt: new version 5.15.6 and 5.15.7 (#33933)Wouter Deconinck1-0/+2
2022-11-16add sz3 and mdz smoke test for inclusion in e4s (#33864)Robert Underwood1-0/+14
* add sz3 and mdz smoke test Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-11-16py-isal: use external libisal (#33932)snehring1-0/+4
* py-isal: adding some missing build deps * py-isal: use external libisal
2022-11-16New Package: rarpd (#28686)Pat Riehecky1-0/+26
2022-11-16neovim: fix build dependencies (#33935)Matthias Wolf1-2/+2
Buildin neovim@0.8.0 complains (for me) about Lua's lpeg and mpack packages not being available at build time. Removing the link-only setting in the dependencies for these two packages fixes the build for me.
2022-11-16starpu: add v1.3.10 (#33934)Nathalie Furmento1-1/+2
2022-11-16Automated deployment to update package flux-core 2022-11-09 (#33780)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-11-15zfp: update for version 1.0.0 (#33452)Garrett Morrison2-32/+71
* zfp: updates and many fixes for version 1.0.0 Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-15xsdk: add version @0.8.0 (#33794)Satish Balay1-9/+92
- enable sundials+magma+ginkgo - enable dealii+sundials - disable dealii~cgal due to build errors - enable petsc+rocm - enable slepc+cuda+rocm - enable strumpack+cuda+slate - enable slate build with non-gcc compilers - enable pumi+shared - enable mfem+shared - enable ginkgo+mpi - add hiop - and exago - use exago~ipopt due to mumps~mpi conflict with mpi.h) - add raja variant [used by exago/hiop] ~raja builds exago in pflow-only mode - i.e exago~hiop~ipopt~python~cuda ^hiop~cuda [Default on MacOS] Co-authored-by: Cody Balos <balos1@llnl.gov>
2022-11-15Update BML versions list in package.py (#33920)Jean-Luc Fattebert1-10/+18
* Update BML versions list in package.py * Update package.py
2022-11-15spectre: add v2022.11.15 (#33921)SXS Bot1-0/+3
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-11-15meson: add new version 0.64.0 (#33880)Erik Schnetter2-2/+16
2022-11-15New Package: Prime95/Mprime (#33895)Saqib Khan1-0/+35
* New Package: Prime95/Mprime * Fix trailing whitespaces in prime95 * Fix checksum for prime95 Signed-off-by: saqibkh <saqibkhan@utexas.edu>
2022-11-15Add v0.8 to Arbor (#33916)Brent Huisman1-5/+14
2022-11-15nsimd: Update Python requirements (#33879)Erik Schnetter1-1/+5
We need Python 3.0:3.9
2022-11-15thepeg: make rivet dependency optional... (#33912)iarspider1-3/+17
* thepeg: make rivet dependency optional... * add "libs" variant, move compiler flags to flag_handler Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-11-15Fix incorrect timer (#33900)Harmen Stoppels1-5/+0
Revamp the timer so we always have a designated begin and end. Fix a bug where the phase timer was stopped before the phase started, resulting in incorrect timing reports in timers.json.
2022-11-15glib: add missing libelf dep (#33894)Harmen Stoppels1-1/+3
2022-11-15openssh: add libxcrypt (#33892)Harmen Stoppels1-0/+1
2022-11-15python: missing libxcrypt dep (#33847)Harmen Stoppels1-0/+16
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-15Revert "fix perl libxcrypt.so dep (#33846)" (#33909)Jonathon Anderson1-1/+0
This reverts commit bf1b2a828c61fb465f7641b6230fef4f17867162, as libxcrypt's configure script requires Perl, leading to a circular dependency.
2022-11-15mochi-margo: add v0.11 (#33910)Matthieu Dorier1-0/+1
2022-11-14[py-pmw-patched] needs setuptools to build (#33902)Stephen Sachs1-0/+3
Error message: ``` ModuleNotFoundError: No module named 'setuptools' ``` Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-14swig: needs zlib (#33890)Harmen Stoppels1-0/+1
2022-11-14Ginkgo 1.5.0 version, new MPI variant, related fixes (#33838)Terry Cojean4-9/+46
* Ginkgo 1.5.0 release, new MPI variant * Fix ROCTHRUST/ROCPRIM issues * Fix deal.II issue with Ginkgo 1.5.0 * Also fix hipRAND+rocRAND RPATH settings * Turn off CCACHE for spack builds. Co-authored-by: Veselin Dobrev <dobrev@llnl.gov> Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2022-11-14Alquimia: tweak for building xsdk v0.8.0 with ROCm/HIP (#33881)Veselin Dobrev1-0/+9
2022-11-14superlu-dist: add version 8.1.2 (#33868)Satish Balay1-0/+1
2022-11-14fix perl libxcrypt.so dep (#33846)Harmen Stoppels1-0/+1
Detected using https://github.com/spack/spack/pull/28109
2022-11-14hdf4: fix build on Apple M1 (#33740)Dom Heinzeller2-0/+13
2022-11-14util-linux: fix deps (#33893)Harmen Stoppels1-0/+2
2022-11-14Remove support for running with Python 2.7 (#33063)Massimiliano Culpo1-2/+2
* Remove CI jobs related to Python 2.7 * Remove Python 2.7 specific code from Spack core * Remove externals for Python 2 only * Remove llnl.util.compat
2022-11-14libxcrypt: 4.4.31 (#33885)Harmen Stoppels1-0/+1
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