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2023-09-08Speed-up `spack external find` execution (#39843)Massimiliano Culpo1-3/+3
* Perform external spec detection with multiple workers The logic to perform external spec detection has been refactored into classes. These classes use the GoF "template" pattern to account for the small differences between searching for "executables" and for "libraries", while unifying the larger part of the algorithm. A ProcessPoolExecutor is used to parallelize the work. * Speed-up external find by tagging detectable packages automatically Querying packages by tag is much faster than inspecting the repository, since tags are cached. This commit adds a "detectable" tag to every package that implements the detection protocol, and external detection uses it to search for packages. * Pass package names instead of package classes to workers The slowest part of the search is importing the Python modules associated with candidate packages. The import is done serially before we distribute the work to the pool of executors. This commit pushes the import of the Python module to the job performed by the workers, and passes just the name of the packages to the executors. In this way imports can be done in parallel. * Rework unit-tests for Windows Some unit tests were doing a full e2e run of a command just to check a input handling. Make the test more focused by just stressing a specific function. Mark as xfailed 2 tests on Windows, that will be fixed by a PR in the queue. The tests are failing because we monkeypatch internals in the parent process, but the monkeypatching is not done in the "spawned" child process.
2023-09-08crosstool-ng: add new package (#39865)Massimiliano Culpo2-0/+51
2023-09-07epics-base package: use the Spack compiler wrappers (#39752)eflumerf1-0/+4
Edit configuration file to use the Spack compiler wrappers.
2023-09-07Make Cabana a Cuda/ROCm package (matching ArborX) (#39809)Sam Reeve1-1/+16
2023-09-07Allow to build latest released version of CP2K with CMake (#39782)Rocco Meli1-9/+4
* allow to build latest version of cp2k with cmake * apply black
2023-09-07neko: add v0.6.1 and fix package (#39751)Niclas Jansson1-0/+5
* neko: add v0.6.1 and fix package * Change to a conditional variant for gslib
2023-09-07add SUNDIALS v6.6.1 (#39853)David Gardner1-0/+1
2023-09-07Automated deployment to update package flux-core 2023-09-07 (#39856)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-09-07Automated deployment to update package flux-security 2023-09-07 (#39855)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-09-07move determine_number_of_jobs into spack.util.cpus, use it in concretize ↵Harmen Stoppels3-3/+0
(#37620)
2023-09-07lua: unzip also required during build (#39802)Martin Aumüller1-1/+1
Unzip required during build otherwise configuration of luarocks fails during installation of lua@5.3.6 on ubuntu 22.04 w/o system unzip.
2023-09-07r-furrr: Add furrr R package. (#39814)Johann Gaebler1-0/+48
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-07r-functional: Add the functional R package. (#39826)Johann Gaebler1-0/+21
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-07Add Figcone Package (#39804)Matheus Henrique1-0/+16
* Add Figcone Package * Fix the style * add url * fix style removing whitespace of a blanck line * remove versions
2023-09-07duckdb: add v0.8.1 (#39851)Geoffrey Lentner1-1/+2
2023-09-07r-tinytiger: Add tinytiger R package. (#39828)Johann Gaebler1-0/+33
* r-tinytiger: Add tinytiger R package. * Fix homepage. --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-06seacas: Set TPL_ENABLE_Pthread=ON when +thread_safe (#39703)Tom Payerle1-0/+2
* seacas: Set TPL_ENABLE_Pthread=ON when +thread_safe This should fix #39702 Basically, following suggestion of error message and setting TPL_ENABLE_Pthread to the value of the boolean spack variant thread_safe * seacas: Fix style issue Add space after comment #
2023-09-06cgns: Add -fPIC to Fortan/C compilation flags (#39700)Tom Payerle1-0/+4
* cgns: Add -fPIC to Fortan/C compilation flags This should fix #39699 * cgns: Add -fPIC compilation flags when +fortran Incorporating suggestions of @aumuell with addition of making +pic required when +fortran
2023-09-06xyce: add version 7.7.0 and specialize patch (#39696)Paul Kuberry2-40/+6
2023-09-06Use correct hash for 3.0 (#39743)Brian Vanderwende1-1/+1
2023-09-06Eigen: Fix patch URL (#39746)Rémi Lacroix1-2/+2
2023-09-06Add libpostal Package (#39758)Johann Gaebler1-0/+44
* Add libpostal. * Add back Spack license.
2023-09-06r-sets: Add R `sets` package (#39760)Johann Gaebler1-0/+54
* r-sets: Add r-sets. * r-sets: Fix R dependency for first version. * r-sets: Remove package versions for which a compatible version of R cannot be installed.
2023-09-06r-humaniformat: Add R `humaniformat` package (#39761)Johann Gaebler1-0/+26
* r-humaniformat: Add r-humaniformat. * r-humaniformat: Remove blank line at end of file. * Fix broken link in description.
2023-09-06new damaris package updated to use Daamris v.1.9.0 and including py-mpi4py ↵Josh Bowden1-17/+19
dependency when +python specified (#39774)
2023-09-06sirius: simplify hip architectures, fix umpire dependency (#39776)Simon Pintarelli1-8/+2
2023-09-06openfoam-org: add variant scotch (#39841)kjrstory1-3/+4
2023-09-06musl: bump (#39838)Harmen Stoppels1-0/+1
2023-09-06FFTX: replace extends with variants (#39701)Patrick Broderick7-55/+125
The spiral-software package had a number of extensions, but does not work unless they actually exist in the spiral software prefix (creating a view is not sufficient). With the removal of "spack activate" (different from "spack env activate"), a new approach is needed to support optional components of `spiral-software` . This commit updates the spiral-software package to copy the dependency installations into its own prefix. This commit also adds versions for `fftx` and `spiral-software`, as well as an optional `spiral-software-jit` package.
2023-09-06spectre: add v2023.07.29 (#39145)SXS Bot1-0/+3
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2023-09-06libfabric: Add versions 1.18.2, 1.19.0 (#39757)Jack Morrison1-0/+2
2023-09-06Add pika 0.18.0 (#39842)Auriane R1-0/+1
2023-09-06exaca: add version 1.2 (#39810)Sam Reeve1-2/+4
2023-09-06g2: add dependencies, build options, and v3.4.6 release (#39717)Edward Hartnett1-5/+23
* adding bacio to g2 dependencies * edited documentation * added version 3.4.6 * starting with 3.4.6, can use any version of jasper * adding w3emc dependency for versions up to 3.4.5 * removed t-brown as maintainer at his request
2023-09-06Add cmdlime package (#39835)Matheus Henrique1-0/+16
* Add cmdlime package * remove the blank line at the end of file
2023-09-05cabana: fix gtest dependency (#39811)Sam Reeve1-1/+1
2023-09-05new package: Yade (#39786)leonardo araujo1-0/+46
* feat: yade package * fix: dependencies for Yade * feat: yade versions * fix: cmake_args and version_url * fix: Spack license identifier * fix: black formatter * fix: black would be reformatted? yes! * feat: add maintainer --------- Co-authored-by: leo magdanello <araujo.leonardo@luizalabs.com>
2023-09-05umpire: Add 2022.10.0 (#37998)Mikael Simberg2-0/+23
* Add umpire 2022.10.0 * Add patches to umpire@2022.10.0 * Add axom 0.8.0 and 0.8.1 * Remove Umpire 2023.06.0
2023-09-05xerces-c: support variant cxxstd=20 (#39784)Wouter Deconinck1-1/+1
2023-09-05podio, edm4hep and lcio: add lib and lib64 to LD_LIBRARY_PATH (#37881)Juan Miguel Carceller2-1/+3
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-09-05boost: support variant cxxstd=20 (#39769)Wouter Deconinck1-0/+1
2023-09-05hpx-kokkos: add 0.4.0 and other minor changes (#39723)Mikael Simberg1-1/+39
* Add hpx-kokkos 0.4.0 * Make git global package property in hpx-kokkos instead of having it version-specific * Add variant for choosing future type in hpx-kokkos * Add support for testing hpx-kokkos
2023-09-05Add maintainers to some bioconductor packages (#39801)pabloaledo5-0/+5
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-09-05clhep: support variant cxxstd=20 (#39768)Wouter Deconinck1-3/+6
2023-09-04glibc: add package (#39695)Harmen Stoppels9-0/+385
2023-09-02py-dataclasses-json: add new package (#39493)Jen Herting1-0/+20
* [py-dataclasses-json] New package * [py-dataclasses-json] limiting py-poetry-core versions
2023-09-02[py-preshed] added version 3.0.8 (#38969)Jen Herting1-0/+2
* [py-preshed] added version 3.0.8 * [py-preshed] reordered for consistancy
2023-08-31py-pandas: add v2.1.0 (#39707)Adam J. Stewart1-47/+52
2023-08-31[NVHPC] add a possibility to control default CUDA version (#38909)Anton Kozhevnikov1-0/+5
* add a possibility to control default cuda version * fix stype * style fix * resolve comment * resolve comment * Fix style in nvhpc package.py --------- Co-authored-by: antonk <antonk@cscs.ch> Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2023-08-31dla-future: add v0.2.0 (#39705)Raffaele Solcà1-7/+47
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