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2023-06-14test/dust: convert to new stand-alone test process (#38367)Tamara Dahlgren1-9/+5
2023-06-14py-nbclient: add 0.8.0 (#38325)Manuela Kuhn1-1/+3
2023-06-14py-nbconvert: add 7.4.0 (#38326)Manuela Kuhn1-19/+20
* py-nbconvert: add 7.4.0 * Move historical dependencies after variant
2023-06-14py-docutils: re-add python@3.7 (#38336)Manuela Kuhn1-0/+1
2023-06-14magma@master: add python dependency (#38341)Satish Balay1-0/+1
2023-06-14edm4hep: Add version 0.9 (#38205)Thomas Madlener1-0/+1
2023-06-14fairmq: Add v1.6.0 (#38392)Dennis Klein1-0/+7
2023-06-14ltp: add v20230516 (#38138)Alec Scott1-0/+1
2023-06-14subread: add 2.0.6, update download paths (#38200)George Young1-4/+4
* subread: add 2.0.6, update download paths * Update var/spack/repos/builtin/packages/subread/package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-06-14openradioss-starter,engine: new package (#38291)kjrstory2-0/+256
* openradioss-starter,engine: new package * openradioss-engine: change version name develop to main * openradioss-starter: change version name develop to main
2023-06-14freeipmi: add v1.6.9 (#38349)Alec Scott1-0/+1
2023-06-14Add Binder spackage (#38371)Kim Liegeois1-0/+54
* Add Binder spackage * Format binder recipe * Format binder recipe
2023-06-14add bioconductor-ebseq (#38380)pabloaledo1-0/+29
* add buiconductor-ebseq Signed-off-by: Pablo <pablo.aledo@seqera.io> --------- Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-06-14ctffind: Add a patch to fix incorrect return types. (#38085)Rémi Lacroix2-0/+35
Prevent the code from crashing (cf. https://grigoriefflab.umassmed.edu/comment/1696#comment-1696).
2023-06-14dsqss: convert to new stand-alone test process (#38372)Tamara Dahlgren1-6/+15
2023-06-14lastz: add v1.04.22 (#38388)Alec Scott1-0/+2
* lastz: add v1.04.22 * Fix formatting of versions to include extra space
2023-06-14ipopt: add v3.14.9 (#38387)Alec Scott1-0/+1
2023-06-14imath: add v3.1.9 (#38386)Alec Scott1-0/+1
2023-06-14imagemagick: add v7.1.1-11 (#38385)Alec Scott1-0/+1
2023-06-14cgal: add v5.5.2 (#38384)Alec Scott1-0/+1
2023-06-14intel-xed: add version 2023.06.07 (#38373)Mark W. Krentel1-1/+2
Add version 2023.06.07, update python to 3.7.
2023-06-14hpcviewer: add version 2023.05 (#38374)Mark W. Krentel1-0/+5
2023-06-14cloc: add v1.96.1 (#38348)Alec Scott1-0/+1
2023-06-14DaV: Drop propagation of HDF5 to darshan (#38361)kwryankrattiger1-1/+1
Darshan Runtime does not properly link symols for HDF5 when using shared libraries.
2023-06-14hbase: add v2.5.4 (#38353)Alec Scott1-0/+1
2023-06-14fzf: add v0.41.1 (#38351)Alec Scott1-0/+1
2023-06-14hashcat: add v6.2.6 (#38352)Alec Scott1-0/+1
2023-06-14hyperfine: add v1.17.0 (#38354)Alec Scott1-0/+1
2023-06-14ftxui: add v4.1.1 (#38350)Alec Scott1-0/+1
2023-06-14Repeatmodeler 2.0.4 (#38337)snehring2-31/+69
* perl-devel-size: adding new package * repeatmodeler: adding new version 2.0.4 * perl-devel-size: adding proper description
2023-06-14dssp: convert to new stand-alone test process (#38368)Tamara Dahlgren1-10/+6
2023-06-13SU2: add versions up to 7.5.1, update dependencies (#37767)kjrstory2-0/+67
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-13add DLA-Future package (#38224)Raffaele Solcà1-0/+135
2023-06-13NWChem: fix fftw3 variant + patch (#38250)Edoardo Aprà2-0/+654
2023-06-13modules: append trailing delimiter to MANPATH when set (#36678)Xavier Delaruelle3-0/+49
Update modulefile templates to append a trailing delimiter to MANPATH environment variable, if the modulefile sets it. With a trailing delimiter at ends of MANPATH's value, man will search the system man pages after searching the specific paths set. Using append-path/append_path to add this element, the module tool ensures it is appended only once. When modulefile is unloaded, the number of append attempt is decreased, thus the trailing delimiter is removed only if this number equals 0. Disclaimer: no path element should be appended to MANPATH by generated modulefiles. It should always be prepended to ensure this variable's value ends with the trailing delimiter. Fixes #11355.
2023-06-12justbuild: bump version 1.1.2 (#38320)Alberto Sartori1-0/+1
2023-06-12curl: add v8.1.2 (#38332)Alec Scott1-0/+1
2023-06-12Update sp package (#38208)Alex Richert1-2/+20
2023-06-12cpp-httplib: add v0.12.5 (#38331)Alec Scott1-0/+1
2023-06-12direnv: add v2.32.3 (#38333)Alec Scott1-0/+1
2023-06-12etcd: add v3.5.9 (#38334)Alec Scott1-0/+1
2023-06-12fastp: add v0.23.4 (#38335)Alec Scott1-0/+1
2023-06-12opencascade: new variants (#35345)Wouter Deconinck1-30/+107
* opencascade: new variants OpenCascade has several major modules and not every application needs all of them. This adds variants for the various modules. It also uodatws the 3rdparty dependency treatment. * [@spackbot] updating style on behalf of wdconinc * Update var/spack/repos/builtin/packages/opencascade/package.py * opencascade: remove variant foundation_classes (always true) * [@spackbot] updating style on behalf of wdconinc * Update var/spack/repos/builtin/packages/opencascade/package.py --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-06-12mercury: add v2.3.0 (#38279)Jerome Soumagne1-13/+9
* fix Boost dependency * fix testing and move psm2/sockets as unsupported * fix style to separate maintainers/tags/version
2023-06-12mvapich2: add hwloc_graphics variant (#38028)MatthewLieber1-1/+5
Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2023-06-12neko: add v0.6.0 and fixed rocm package recipe (#38024)Niclas Jansson1-1/+4
2023-06-12mochi-margo: correct patch versions (#38087)willdunklin1-1/+1
2023-06-12Add new Kokkos release (#38049)Bruno Turcksin1-0/+1
2023-06-12Deprecate R packages for spatial analysis (#38158)Adam J. Stewart3-22/+110
* Deprecate R packages for spatial analysis * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-12libtlx: add v0.6.1 (#38134)Alec Scott1-0/+1