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2017-05-16Update checksum for latest version of cudnn (#4254)Adam J. Stewart1-1/+1
2017-05-16added meme package (#4257)Douglas Duckworth1-0/+43
* added albacore package as well as dependency py-ont-fast5-api * added py-cutadapt and dependency py-xopen * made more changes to albacore and cutadapt as well as dependencies * made changes again per @adamjstewart * fixed by python n00b errors i think * fixed? * tw=79 * made changes to py-ont-fast5-api ont-albacore * removed bad characters * albacore requires setuptools as build and run dependency * added vmd * added back albacore * removed vmd package * added meme software * libz is only needed as link depedency for meme * added libxml2 libxslt libgcrypt as link dependencies
2017-05-15albacore requires setuptools as build and run requirement (#4255)Adam J. Stewart1-7/+7
2017-05-15Add missing dependency to glib package (#4253)Adam J. Stewart1-0/+14
2017-05-15Add latest version of util-linux (#4252)Adam J. Stewart1-1/+2
2017-05-15Remove need for autoreconf in glib package (#4240)Adam J. Stewart2-19/+11
2017-05-14mesa-glu: provides libGLU, the OpenGL utility library from SGI (#4244)Milton Woods1-0/+37
2017-05-14harfbuzz: add latest version (1.4.6) (#4245)Milton Woods1-0/+1
2017-05-14ncurses: build "normal" libs, not just "wide-char" libs, for ncurses@6: (#4246)Milton Woods1-1/+2
2017-05-12espressopp: always depends on py-numpy (#4207)Christoph Junghans1-2/+1
Ref espressopp/espressopp#161
2017-05-12albacore and cutadapt again (#4219)Douglas Duckworth4-0/+174
* added albacore package as well as dependency py-ont-fast5-api * added py-cutadapt and dependency py-xopen * made more changes to albacore and cutadapt as well as dependencies * made changes again per @adamjstewart * fixed by python n00b errors i think * fixed? * tw=79 * made changes to py-ont-fast5-api ont-albacore * removed bad characters
2017-05-12LIBXSMM 1.8.1 (#4235)Hans Pabst1-1/+2
* Included LIBXSMM 1.8 into the list of available versions. * LIBXSMM 1.8.1
2017-05-12Convert pixman to AutotoolsPackage (#4231)Adam J. Stewart1-12/+10
2017-05-12Add SymEngine release 0.3.0 (#4227)Jean-Paul Pelteret1-0/+1
2017-05-12Python cdat-lite package (#4208)Milton Woods1-0/+42
* py-cdat-lite: a python package for managing and analysing climate science data * py-cdat-lite: depends on py-numpy * py-cdat-lite: flake8 compliance * py-cdat-lite: provide a generic URL where multiple versions are listed * py-cdat-lite: restrict python versions; python required at run-time * py-cdat-lite: use URL under pypi.io for consistency with other packages * py-cdat-lite: add run-time dependency on py-numpy
2017-05-12Add pdt support to scorep (#4198)Michael Kuhn2-1/+17
Add pdt dependency to scorep
2017-05-11Download udunits from FTP server (#4218)Adam J. Stewart1-31/+4
2017-05-11Add latest version of eigen (#4224)Adam J. Stewart1-20/+11
2017-05-11Fix metis list_url (#4222)Adam J. Stewart1-1/+1
2017-05-11Flann package (#3966)Stephen McDowell1-0/+141
* Initial attempt at flann packaging. Python2 somehow works. Python3 does not. Still debugging their obscure setup.py configuration. * Flann good enough. Python3 broken but close. Flake8 checks in place. Unsure about CMAKE_BUILD_TYPE and default spack behavior. * spack uses RelWithDebInfo as default build type. * builds py2/3, but direct site-packages install * prefix working, empty python install dir * flann package +python installs correctly * str format {0} instead of {} * potential doctest fix * consistency of build env with PythonPackage * fix python again, test deptype todo, build type * potentially enable matlab, untested
2017-05-11Force suite-sparse to use Spack's compiler wrappers (#4220)Adam J. Stewart1-4/+3
2017-05-11Add patch to fix missing MODULESHOME in profile (#4214)Adam J. Stewart2-12/+40
2017-05-11Update NAG checksum, add F77 and FC (#4196)Adam J. Stewart1-1/+5
2017-05-10Open MPI: add 2.1.1 to the list (#4204)Howard Pritchard1-1/+2
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-05-10Add nemesistcpib fabrics variant (#4197)Michael Kuhn1-1/+4
2017-05-10updating git (#4200)Suzanne Parete-Koon1-0/+5
2017-05-10cosmomc: Enable Python bindings (#4169)Erik Schnetter1-4/+13
* cosmomc: Enable Python bindings * cosmomc: Make python dependency optional
2017-05-10hdf5: Correct spelling (#4172)Erik Schnetter1-3/+3
* hdf5: Correct spelling * hdf5: avoid trailing spaces
2017-05-10highfive: New package; this is a C++ wrapper for the HDF5 library (#4173)Erik Schnetter1-0/+52
* highfive: New package; this is a C++ wrapper for the HDF5 library The C++ wrapper that is shipped with the HDF5 library has several shortcomings. The highfive library seems to avoid these. * highfive: Make MPI variant default to true
2017-05-10Add latest version of PGI compilers (#4186)Adam J. Stewart1-5/+6
* Add latest version of PGI compilers * Prepend, don't overwrite
2017-05-10py-flask version updates, remote switch (#4166)Stephen McDowell1-1/+2
* version updates, remote switch * trim versions to original and most recent * proper url discovered and tested
2017-05-10enable cuda support for suite-sparse (#4163)Stephen McDowell1-14/+14
* enable cuda support for suite-sparse * do not use spec.satisfies * cuda restructure, give clearer comment of why * str format compatibility * flake8 checks
2017-05-09Add a new package for ExtUtils::MakeMaker (#4179)Adam J. Stewart1-0/+38
2017-05-09Fix newline character in GCC package (#4181)Adam J. Stewart1-1/+1
* Fix newline character in GCC package * Remove the newline completely
2017-05-09Adding FASTMath uber package and missing FASTMath packages (#4120)Mark C. Miller10-3/+477
* adding 0.5.1 and variant for uint8 bit stream word type * Revisions as per davydden * fixing style (flake8) issues * - switched to derive from MakefilePackage - fixed typo in variant check - Confirmed installs correctly with bswtuint8 variant * added build method; changed zfp_incdir to incdir * * Adding uber fastmath package to support 'spack install fastmath' * Adding dims variant boxlib to control compile-time spatial dimension count * Explicitly disabling many parts of moab to get lib to build. Don't need tools yet. * Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined. * adding mesquite package * * Added Chombo (still working on Fortran name mangling) * Made mesquite depend on mpi * Fixed use of boxlib's dims numerical variant * adding PUMI * flake8 compliance * adding phasta * fixing flake8 issues * undue $SYS_TYPE protection change * fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR * revisions as per adamjstewart * re-enabling trilinos and phasta dependencies * all changes requested modulu values= and assert statement * fixing cmake_args usage in pumi; fixing lib installs for chombo * first pass at numerical variant * fixing dims variant as per @adamjstewart * fixing func/var name collision * fixing means of disabling -Werror * fix name collision for cmake_args var/func * fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim * remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle * fix flake8 import os issue * remove extraneous comment * adding url for fastmath scidac site * final fixes as per @adamjstewart * adding 1 dims option for boxlib * switching make(all) to gmake(all)
2017-05-09Add latest versions of Intel compiler (#4184)Adam J. Stewart2-0/+8
2017-05-09Make openmpi package defn more robust (#4183)George Hartzell1-0/+2
Make openmpi handle bad ibv_devices return statuses without bailing out completely. See #4162 for background.
2017-05-09ncurses: Always build tools (#4174)Erik Schnetter1-1/+0
Otherwise, the install can fail if the system-provided `tic` binary is too old.
2017-05-09simulationio: Declare dependency on the HDF5 C++ bindings (#4177)Erik Schnetter1-0/+1
2017-05-09qthreads: Convert to AutoTools package (#4176)Erik Schnetter1-8/+8
2017-05-09funhpc: Update to version 1.3 (#4170)Erik Schnetter1-3/+5
Also use a Spack-provided GoogleTest.
2017-05-09gdbm: Declare readline dependency (#4171)Erik Schnetter1-0/+2
2017-05-09cp2k: fixed compilation issues for intel stackMassimiliano Culpo3-24/+81
Added DFLAGS to the `make.inc` file being written. These macros are also added to the language specific variables like CFLAGS, CXXFLAGS and FCFLAGS. Changed `spec.satisfies('foo')` with `'foo' in spec` in `intel-mkl`, see #4135. Added a basic build interface to `intel-mpi`.
2017-05-08Add GCC 7 (#4144)Adam J. Stewart4-52/+210
* Add GCC 7 * Allow users to build subset of GCC compilers with multi-value variant. * Add comment explaining what 'all' actually means * More specific golang support * Only require Zip when building Java * Comment out provide directives that don't currently work * Add Ada support * Use conflicts directive * Fix joining of languages * Need special flag to build jit * Explicitly declare GNAT download extension * Import tty, update lib64 to lib * BRIG and Go are not supported on macOS * Simplify formatting and imports * JIT patch required for newer versions as well
2017-05-08qt: add 5.8.0 which builds on Sierra with clang 8.1.0 (#4109)Denis Davydov3-2/+50
* qt: add 5.8.0 which builds on Sierra with clang 8.1.0 * enable parallel build, add freetype dependency * minor * minor
2017-05-08Merge pull request #4145 from scheibelp/features/temporary-no-python-for-libxcbscheibelp2-2/+4
Remove python dependency for libxcb and xcbproto
2017-05-07Paramiko python extensions + his deps and other related extensions (#4158)Luigi Calori7-0/+272
* adding paramiko and missing dependencies, setup to work with #2548 * adding other deps for paramiko * fix flake8 errors * removed spurious add * address suggestion for proper dependencies * fix cryptography deps * remove FIXME comments and commented depends lines
2017-05-07Added scala package (#67)nvarini1-0/+50
2017-05-06gmp: switch to download directly from GNU (#4152)Adam J. Stewart1-1/+1
2017-05-06mpfr: switch to more reliable URL (#4139)Adam J. Stewart1-2/+3
* Add list_url to mpfr * Switch to download directly from GNU * http -> https
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