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2024-06-05openblas: add v0.3.27 (#44312)Carlos Bederián1-0/+9
2024-06-05Automated deployment to update package flux-core 2024-06-05 (#44554)Vanessasaurus1-0/+2
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-06-05valgrind: Add 3.21.0, 3.22.0, and 3.23.0 (#44557)Mikael Simberg1-0/+3
2024-06-05mold: unvendor (#44539)Harmen Stoppels2-6/+29
2024-06-05Work around the linker incompatibility that exists with fortran and ↵Chris Marsh1-0/+5
apple-clang (#44547)
2024-06-05Armadillo: fix for linker error with apple-clang 15 (#44551)Chris Marsh1-0/+8
* Armadillo needs to use -ld_classic with apple-clang 15
2024-06-04py-your: new package (#44448)Tony Weaver1-0/+34
* py-your: new package Spack package recipe for YOUR, Your Unified Reader. YOUR processes pulsar data in different formats. Output below from spack install py-your spack install py-your [+] /usr (external glibc-2.28-oj2wjfl2ao5inhfz4qehw6hlck2hizvp) [+] /opt/apps/spack/gcc-runtime-8.5.0-5k6kvi5 [+] /opt/apps/spack/libxcrypt-4.4.35-zigqpjo [+] /opt/apps/spack/ncurses-6.4-xbvwv2w [+] /opt/apps/spack/erfa-2.0.0-4qkta2n [+] /opt/apps/spack/zlib-ng-2.1.6-ccn5qny [+] /opt/apps/spack/pcre-8.45-33dfhul [+] /opt/apps/spack/libpciaccess-0.17-2qdxdjo [+] /opt/apps/spack/libmd-1.0.4-zbdiprt [+] /opt/apps/spack/qhull-2020.2-klc7ewb [+] /opt/apps/spack/bzip2-1.0.8-t65bq3t [+] /opt/apps/spack/xz-5.4.6-axoznvt [+] /opt/apps/spack/alsa-lib-1.2.3.2-a7icjdy [+] /opt/apps/spack/zstd-1.5.6-nyk6gt6 [+] /opt/apps/spack/libffi-3.4.6-ibucrfe [+] /opt/apps/spack/yasm-1.3.0-v4etmmm [+] /opt/apps/spack/openblas-0.3.26-pfyk2vi [+] /opt/apps/spack/pkgconf-1.9.5-ckjdqjm [+] /opt/apps/spack/wcslib-7.3-zvcqq7o [+] /opt/apps/spack/libiconv-1.17-jskazis [+] /opt/apps/spack/unzip-6.0-mqftjtp [+] /opt/apps/spack/libjpeg-turbo-3.0.0-vjvivme [+] /opt/apps/spack/readline-8.2-2ys6ede [+] /opt/apps/spack/openssl-3.2.1-4lqdgni [+] /opt/apps/spack/pigz-2.8-rx263bp [+] /opt/apps/spack/libpng-1.6.39-kiuku4y [+] /opt/apps/spack/libbsd-0.12.1-njt5grs [+] /opt/apps/spack/swig-4.0.2-fortran-z3sbnze [+] /opt/apps/spack/binutils-2.42-vkjcvfr [+] /opt/apps/spack/util-linux-uuid-2.38.1-w3kgjq3 [+] /opt/apps/spack/hdf5-1.14.3-sbuiw6q [+] /opt/apps/spack/libedit-3.1-20230828-676jwbd [+] /opt/apps/spack/nghttp2-1.57.0-u72gxms [+] /opt/apps/spack/ffmpeg-6.1.1-2vhrbda [+] /opt/apps/spack/libxml2-2.10.3-37klvxv [+] /opt/apps/spack/gdbm-1.23-cylmqwx [+] /opt/apps/spack/sqlite-3.43.2-axuxulg [+] /opt/apps/spack/tar-1.34-wjzs4wj [+] /opt/apps/spack/freetype-2.13.2-in4taxi [+] /opt/apps/spack/expat-2.6.2-7kfe3hb [+] /opt/apps/spack/curl-8.6.0-gpzsr3p [+] /opt/apps/spack/hwloc-2.9.1-fhoz6al [+] /opt/apps/spack/gettext-0.22.4-zjsp346 [+] /opt/apps/spack/lua-5.3.6-47356ia [+] /opt/apps/spack/cfitsio-3.49-mmy3dbr [+] /opt/apps/spack/python-3.10.13-fz7fymx [+] /opt/apps/spack/elfutils-0.190-uswzaiw [+] /opt/apps/spack/py-pytz-2023.3-ojdlhrd [+] /opt/apps/spack/py-cycler-0.11.0-b7mjvv7 [+] /opt/apps/spack/py-pip-23.0-lxkcvby [+] /opt/apps/spack/python-venv-1.0-2cz5c3s [+] /opt/apps/spack/py-numpy-1.26.4-t5acjcv [+] /opt/apps/spack/llvm-14.0.6-3nosumn [+] /opt/apps/spack/py-packaging-23.1-wkeyuk6 [+] /opt/apps/spack/py-six-1.16.0-iv6iv3q [+] /opt/apps/spack/py-pybind11-2.12.0-5rvupjv [+] /opt/apps/spack/py-setuptools-69.2.0-3do76jw [+] /opt/apps/spack/py-pyparsing-3.1.2-fq6imlt [+] /opt/apps/spack/py-wheel-0.41.2-brm3k3h [+] /opt/apps/spack/py-llvmlite-0.41.1-qom3l5h [+] /opt/apps/spack/py-astropy-4.0.1.post1-xbojixg [+] /opt/apps/spack/py-python-dateutil-2.8.2-kzdfskc [+] /opt/apps/spack/py-numexpr-2.8.4-fc5xc5s [+] /opt/apps/spack/py-h5py-3.11.0-y6drk3j [+] /opt/apps/spack/py-tifffile-2023.8.30-oof4try [+] /opt/apps/spack/py-pygments-2.16.1-stgrccl [+] /opt/apps/spack/py-mdurl-0.1.2-nqk43ry [+] /opt/apps/spack/py-scipy-1.13.0-vxjgfov [+] /opt/apps/spack/py-contourpy-1.0.7-jg5lhss [+] /opt/apps/spack/py-pillow-10.3.0-ijh2cju [+] /opt/apps/spack/py-kiwisolver-1.4.5-vdh5sq5 [+] /opt/apps/spack/py-fonttools-4.39.4-x5ydbox [+] /opt/apps/spack/py-bottleneck-1.3.7-ztsm4lg [+] /opt/apps/spack/py-lazy-loader-0.4-k7hgvka [+] /opt/apps/spack/py-numba-0.58.1-hzvrjwj [+] /opt/apps/spack/py-markdown-it-py-3.0.0-l4p4qv5 [+] /opt/apps/spack/py-imageio-2.34.0-z5hu4yc [+] /opt/apps/spack/py-matplotlib-3.8.4-azq2fzm [+] /opt/apps/spack/py-pandas-1.5.3-p3gnh6t [+] /opt/apps/spack/py-rich-13.4.2-okhgwwz [+] /opt/apps/spack/py-networkx-3.1-b54br7r [+] /opt/apps/spack/py-scikit-image-0.23.2-cvyzh3t ==> Installing py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x [83/83] ==> No binary for py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x found: installing from source ==> Fetching https://github.com/thepetabyteproject/your/archive/refs/tags/0.6.7.tar.gz ==> No patches needed for py-your ==> py-your: Executing phase: 'install' ==> py-your: Successfully installed py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x Stage: 1.43s. Install: 0.99s. Post-install: 0.12s. Total: 3.12s * Removed setup_run_environment After some testing, both spack load and module load for the package will include the bin directory generated by py-your as well as the path to the version of python the package was built with, without the need for the setup_run_environment function. I removed that function (Although, like Tamara I thought it would be necessary based on other package setups I used as a basis for this package). Note: I also updated the required version of py-astropy from py-astropy@4.0: to @py-astropy@6.1.0: In my test builds, the install was picking up version py-astropy@4.0.1.post1 and numpy1.26. However when I tried to run some of the code I was getting errors about py-astropy making numpy calls that are now removed. The newer version of py-astropy corrects these. Ideally this would be handled in the py-astropy package to make sure numpy isn't too new
2024-06-04py-humanize: add v1.0.0, v1.1.0, v2.6.0, v3.14.0, v4.8.0, v4.9.0 (#44516)Teague Sterling1-0/+7
* py-humanize: add v1.0.0, v1.1.0, v2.6.0, v3.14.0, v4.8.0, v4.9.0
2024-06-04[intel-tbb] Speed up build and add versions (#44549)Kyle Knoepfel1-2/+6
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-06-04py-python-json-logger: add v2.0.2 (#44517)Teague Sterling1-0/+1
* py-uvloop: add v3.8.14, v3.9.15, v3.10.3 and dependencies * py-python-json-logger: add v2.0.2
2024-06-04py-maturin: fix rust version dependencies to build (#44518)Teague Sterling1-5/+18
* py-uvloop: add v3.8.14, v3.9.15, v3.10.3 and dependencies * rollback * py-maturin: fix rust version dependencies to build
2024-06-04linaro-forge: added 24.0.1 version (#44538)kenche-linaro1-0/+6
2024-06-04kallisto: add version 0.50.1 (#44544)snehring1-1/+5
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-06-04proj@7: support the new tiff interface in cmake@3.19 (#44535)Chris Marsh2-0/+14
Add patch for proj@7 to support the new tiff interface shipped in cmake@3.19: This compliments the existing patch for @8 in #43780
2024-06-04python: make every view a `venv` (#44382)Todd Gamblin1-0/+46
#40773 introduced python-venv, which improved build isolation and avoids issues with, e.g., `ubuntu`'s system python modifying `sysconfig` to include a (very unwanted) `local` directory within the default install layout. This addresses a few cases where #40773 removed functionality, without harming the default cases where we use `python-venv`. Traditionally, *every* view with `python` in it was essentially a virtual environment, because we would copy the `python` interpreter and `os.py` into every view when linking. We now rely on `python-venv` to do that, but only when it's used (i.e. new builds) and only for packages that have an `extends("python")` directive. This again makes every view with `python` in it a virtual environment, but only if we're not already using a package like `python-venv`. This uses a different mechanism from before -- instead of using the `virtualenv` trick of copying `python` into the prefix, we instead create a `pyvenv.cfg` like `venv` (the more modern way to do it). This fixes two things: 1. If you already had an environment before Spack `v0.22` that worked, it would stop working without a reconcretize and rebuild in `v0.22`, because we no longer copy the python interpreter on link. Adding `pyvenv.cfg` fixes this in a more modern way, so old views will keep working. 2. If you have an env that only includes python packages that use `depends_on("python")` instead of `extends("python")`, those packages will now be importable as before, though they won't have the same level of build isolation you'd get with `extends` and `python-venv`. * views: avoid making client code deal with link functions Users of views and ViewDescriptors shouldn't have to deal with link functions -- they should just say what type of linking they want. - [x] views take a link_type, not a link function - [x] views work out the link function from the link type - [x] view descriptors and commands now just tell the view what they want. * python: simplify logic for avoiding pyvenv.cfg in copy views Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04CMake: add 3.28.6 && 3.29.4 (#44532)John W. Parent1-2/+11
* Add CMake 3.28.6 * Add 3.29.4
2024-06-04gcc: add mold variant to use mold by default (#44117)Mikael Simberg1-0/+10
2024-06-03amrex: add v24.06 (#44495)Weiqun Zhang1-0/+1
2024-06-04duckdb: add v1.0.0, v0.10.3 (#44531)Teague Sterling1-0/+9
* duckdb: add v1.0.0, v0.10.3 * Adding issue reference
2024-06-03py-fenics-dolfinx: dependency update (#44524)Garth N. Wells1-1/+2
* Update nanobind dependency * Update py-nanobind dependency
2024-06-03charmpp: enable darwin arm build (#44103)Nils Vu1-0/+3
2024-06-03py-nanobind: add v2.0.0 (#44371)Garth N. Wells1-0/+4
* Add nanobind 2.0.0 * Add dependency * Fix dependency name * Change "_" -> "-"
2024-06-03Update py-vl-convert-python (#44527)吴坎1-4/+14
* Update py-vl-convert-python: 1. set version to 1.4.0 2. set version 1.3.0 deprecated since its rust dependency curve@4.1.1 is not able to compile
2024-06-03hugo: add v0.126.3 (#44530)Owen Solberg1-0/+1
Co-authored-by: Owen Solberg <owen.solberg@sana.com>
2024-06-03seqfu: new package (#44445)Diego Alvarez S2-0/+45
* Add seqfu --------- Co-authored-by: dialvarezs <dialvarezs@users.noreply.github.com>
2024-06-03hip@6.1: fix reference to hsa-rocr-dev so it works when externally defined ↵eugeneswalker1-1/+1
(#44528)
2024-06-03nb: new package (#44456)James Taliaferro1-0/+45
* new package: nb * only one filter_file, install completions * completions now implicit, merged by the view
2024-06-03rdkit (#44476)Rocco Meli1-0/+1
2024-06-03pflogger: add version 1.15.0 (#44467)Matt Thompson1-0/+1
2024-06-03Slate version 2024 05 31 (#44529)G-Ragghianti3-0/+11
* updating version for slate, blaspp, and lapackpp * verified new hashes
2024-06-03`seacas`: protect against known mixed-toolchain problem (#44378)Chris Marsh1-0/+11
* Protected against a known problem with mixed gcc/apple-clang toolchains. Fixes #44330 --------- Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-06-03Apply patch to allow vtk to compile with %gcc 13 and 14. (#44332)Chris Marsh1-0/+8
* Apply patch from upstream to allow vtk compilation with %gcc 12 and 14. * Fixes #44331 * fix soec usage * fix compiler version range * Finalize version range, switch to .diff file --------- Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-06-02upcxx: update to latest gasnet and fix some bitrot (#44488)Dan Bonachea2-8/+42
* Now need to explicitly depend on libfabric for Cray EX * Ensure build uses the selected CUDA and ROCm versions * Correct spelling on `configure --with-ldflags` * Patch a defect regarding `configure --with-ldflags` * Default to Spack's copy of GASNet-EX, which is newer than embedded
2024-06-01gasnet: add v2024.5.0 (#44478)Dan Bonachea1-7/+17
* Add GASNet v 2024.5.0 * cosmetic fix to info output * Add a missing dependency * Ensure GASNet detects the provided ROCm/CUDA dependency * [@spackbot] updating style on behalf of bonachea --------- Co-authored-by: bonachea <bonachea@users.noreply.github.com>
2024-06-01py-fortls: add v3.1.0 (#44477)Rocco Meli1-1/+4
* Spglib: add version 2.4.0 * DLA-Future: fix +test option * update * [@spackbot] updating style on behalf of RMeli * Apply suggestions from code review Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: RMeli <RMeli@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01gmsh: add v4.11.1, master (#41320)Filippo Spiga1-0/+3
* Adding gmsh 4.11.1 * Becoming a maintainer --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01py-griddataformats: add v1.0.2 (#44475)Rocco Meli1-2/+5
* update * Apply suggestions from code review Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01apptainer: adding version 1.3.1 (#44104)snehring5-1/+80
e2fsprogs: adding version 1.47.0 and fuse2fs variant fuse-overlayfs: adding version 1.13 squashfuse: adding version 0.5.1 and 0.5.2 e2fsprogs: fixing audit errors apptainer: expanding deps to cover more versions, fix binary_path logic. apptainer: add go version deps, fix e2fsprogs patch sums, rework dep paths fuse-overlayfs: tightening up the libfuse dep Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-31mapl: add 2.46.2, 2.40.5 (#44466)Matt Thompson1-0/+2
2024-05-31pass: new package (#44454)James Taliaferro1-0/+63
* New package: password-store * add bash completion as variant * also patch the cygwin platform snippet * update description and maintainers * make completions implicit and don't overwrite the completions package * remove completion option * formatting * clean up file filter syntax * remove reference to completion variant * remove dependency on bash-completion * clarify comments * bashcompdir is already the default * add optional dependency on xclip * fix formatting
2024-05-31ruby: adding version 3.3.2 (#44447)snehring1-0/+1
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-31tamaas: adding new versions and python install fix (#44469)Lucas Frérot2-1/+75
* tamaas: install python extension with explicit pip call * tamaas: patching compilation issues with recent compilers * tamaas: added versions 2.7.0 and 2.7.1
2024-05-31add in the latest versions of FMS (#44471)Ryan Mulhall1-0/+8
Co-authored-by: rem1776 <rem1776@github.com>
2024-05-31dla-future: Add 0.5.0 (#44463)Raffaele Solcà1-2/+20
* add dla-future@0.5.0 * [@spackbot] updating style on behalf of rasolca * fix typo * review suggestions --------- Co-authored-by: rasolca <rasolca@users.noreply.github.com>
2024-05-31Updated version (#44461)potter-s1-0/+1
Co-authored-by: Simon Potter <sp39@sanger.ac.uk>
2024-05-31util-macros: ensure url_for_version works for older versions (#44421)Wouter Deconinck1-5/+5
* util-macros: ensure url_for_version only used for older versions * util-macros: use url.substitute_version after xz -> bz2 * util-macros: mv url_for_version down the file
2024-05-31py-junit2html: new package, version '31.0.2' (#44399)Lydéric Debusschère1-0/+23
* py-junit2html: new package, version '31.0.2' * py-junit2html: install from sources instead of from wheel
2024-05-31Bump-up rocm-opencl with 6.1.0 & 6.1.1 and adding hsa library path in ↵renjithravindrankannath2-4/+22
LD_LIBRARY_PATH (#44171) * Adding hsa library path in LD_LIBRARY_PATH * Prepending instead of setting LD_LIBRARY_PATH to hsa-rocr-dev/lib * adding rocm-opencl 6.1.0 & 6.1.1 updates
2024-05-31Updates meep to latest release 1.29.0 (#44468)Matt Schramm1-0/+1
2024-05-31Adding HPX v1.10.0 to package (#44470)Hartmut Kaiser1-0/+1
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2025-04-04 23:27:14 +0000