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2024-09-23acts dependencies: new versions as of 2024/09/23 (#46538)Stephen Nicholas Swatman3-0/+4
This commit adds some new versions of acts, detray, and vecmem.
2024-09-23`py-cffi`: Add macos patch from cffi-feedstock, add version 1.17.1, update ↵Chris Marsh1-0/+19
depe (#46484) * Add macos patch from cffi-feedstock, add version 1.17.1, update depends_on versions * missing patch * Use a url for the patch * Remove 3.12 support
2024-09-22*: no loop over files with filter_file(*files) (#46420)Wouter Deconinck5-18/+9
* *: no loop over files with filter_file(*files) * scalpel: revert
2024-09-22qd: add new versions and pull from main source tree (#46451)Joseph Wang1-2/+5
* qd: add new versions and pull from main source tree * add comment to that sha256 identical is intentional
2024-09-22py-jaxlib: add GCC 13 support (#46433)Adam J. Stewart1-0/+6
2024-09-22bcftools: Add runtime dependency gffutils (#46255)potter-s1-0/+1
Co-authored-by: Simon Potter <sp39sanger.ac.uk>
2024-09-22libwebsockets: add v4.3.3 (#46380)Sajid Ali1-0/+4
Co-authored-by: Bernhard Kaindl <bernhard.kaindl@cloud.com>
2024-09-22py-jiter: new package (#46308)Jen Herting1-0/+21
2024-09-22py-striprtf: New package (#46304)Jen Herting1-0/+19
2024-09-22py-dirtyjson: new package (#46305)Jen Herting1-0/+19
2024-09-22py-typing-extensions: added 4.12.2 (#46309)Jen Herting1-0/+1
2024-09-22py-beautifulsoup4: added 4.12.3 (#46310)Jen Herting1-0/+1
2024-09-22gsmsh: add missing png, jpeg and zlib deps (#46395)Christophe Prud'homme1-0/+3
2024-09-22py-tensorflow: add GCC 13 conflict (#46435)Adam J. Stewart1-0/+1
2024-09-22py-sphinx-fortran: new package (#46401)Richard Berger1-0/+26
2024-09-22py-pyenchant: new package (#46400)Richard Berger1-0/+23
2024-09-22fftw: Apply fix for missing FFTW3LibraryDepends.cmake (#46477)Tuomas Koskela1-0/+5
2024-09-22py-horovod: support newer torch, gcc (#46432)Adam J. Stewart1-113/+56
2024-09-22py-linkchecker: new package (#46403)Richard Berger1-0/+27
2024-09-22py-fiona: add v1.10.1 (#46425)Adam J. Stewart1-0/+1
2024-09-22static-analysis-suite: delete: no longer available (#46519)Wouter Deconinck1-38/+0
2024-09-22py-nvidia-dali: update to v1.41.0 (#46369)Thomas Bouvier1-2/+26
* py-nvidia-dali: update to v1.41.0 * py-nvidia-dali: drop unnecessary 'preferred' attribute
2024-09-22fpart: Confirm license and c dependency (#46509)Derek Ryan Strong1-3/+2
2024-09-22bird: change url and checksums, add v2.15.1 (#46513)Wouter Deconinck1-4/+33
2024-09-22codec2: fix url; add v1.2.0 (#46514)Wouter Deconinck1-1/+11
2024-09-22grackle: fix url, checksums, deps and sbang (#46516)Wouter Deconinck1-8/+25
2024-09-22goblin-hmc-sim: fix url (#46515)Wouter Deconinck1-1/+1
2024-09-22yajl: fix url (#46518)Wouter Deconinck1-1/+1
2024-09-22shc: fix url (#46517)Wouter Deconinck1-1/+1
2024-09-22testdfsio: fix url and switch to be deprecated (#46520)Wouter Deconinck1-3/+7
2024-09-22evemu: fix url (#46521)Wouter Deconinck1-7/+8
2024-09-22py-falcon: fix url (#46522)Wouter Deconinck1-1/+1
2024-09-22py-cftime: fix url (#46523)Wouter Deconinck1-1/+1
2024-09-22tinker: add v8.7.2 (#46527)Wouter Deconinck1-1/+7
2024-09-22opendatadetector: Add an env variable pointing to the share directory (#46511)Juan Miguel Carceller1-1/+1
* opendatadetector: Add an env variable pointing to the share directory * Rename the new variable to OPENDATADETECTOR_DATA and use join_path --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-09-22geant4: Add a patch for twisted tubes (#45368)Juan Miguel Carceller2-0/+878
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-09-21py-onnxruntime: add v1.18.0 -> v1.18.3 and add ROCm support (#46448)afzpatel2-1/+115
* add ROCm support for py-onnxruntime * add new versions of py-onnxruntime * add review changes
2024-09-21Bazel: add GCC 13 support for v6 (#46430)Adam J. Stewart1-2/+13
* Bazel: add GCC 13 support for v6 * Fix offline builds
2024-09-21py-onnx: link to external protobuf (#46434)Adam J. Stewart1-1/+1
2024-09-21py-ruff: add v0.6.5 (#46459)Adam J. Stewart1-0/+1
2024-09-21py-cmocean: add v4.0.3 (#46454)Adam J. Stewart1-0/+4
2024-09-21Remove `spack.target` from code (#46503)Massimiliano Culpo8-18/+23
The `spack.target.Target` class is a weird entity, that is just needed to: 1. Sort microarchitectures in lists deterministically 2. Being able to use microarchitectures in hashed containers This PR removes it, and uses `archspec.cpu.Microarchitecture` directly. To sort lists, we use a proper `key=` when needed. Being able to use `Microarchitecture` objects in sets is achieved by updating the external `archspec`. Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-21cans: update homepage and url (#46488)Wouter Deconinck1-2/+2
2024-09-21chatterbug: update homepage and git (#46489)Wouter Deconinck1-2/+2
2024-09-20Introduce the bufr_query library from NOAA-EMC (#45920)Stephen Herbener1-0/+59
* Introduce the bufr_query library from NOAA-EMC (#461) This PR adds in a new package.py script for the new bufr_query library from NOAA-EMC. This is being used by JEDI and other applications. * Add explicit build dependency spec to the pybind11 depends_on spec Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * Convert patch file to the URL form which pulls the changes from github. Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * Added new version (0.0.3) and removed obsolete site-packages.patch file --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-20gcc: simplify setup_run_environment (#46505)Massimiliano Culpo1-26/+7
If the spec is external, it has extra attributes. If not, we know which names are used. In both cases we don't need to search again for executables. Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-20petsc@3.21 +rocm: add patches for rocm 6+ (#46486)eugeneswalker1-0/+10
2024-09-20gptune: don't make `git` attribute an Executable (#46492)Wouter Deconinck1-14/+11
* gptune: don't make `git` attribute an Executable * gptune: fine, I'll fix style myself then
2024-09-20Remove code from Compiler that is not used anymore (#45982)Massimiliano Culpo1-1/+1
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-19amr-wind: use CMAKE_CUDA_ARCHITECTURES (#46442)Jon Rood1-3/+1