| Age | Commit message (Collapse) | Author | Files | Lines |
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* new package: libglvnd
* remove virtual provides from libglvnd
libglvnd does not provide them directly, but
through implementations that depend on it.
* fix flake8 errors
* libglvnd: fix style/remove unecessary variants
* remove older libglvnd version
* explicitly enable all libglvnd stubs
* libglvnd: conflict with non-linux platform
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* Specify rose/boost dependencies separately
* Replace custom bootstrap phase with autoreconf phase and fix typo
when locating bash exe
* Add bison/flex dependencies
* Fix configure args typo
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* Choose a specific commit as a version (before, the only version was
the master branch)
* Add CMake patch which allows for building the version added here
(this replaces the existing patches for percept in Spack)
* Update trilinos dependency
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old (adios1) integration is not supported, maintained, or recommended
for openfoam. The of-adios-write package serves no purpose any more.
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Also update dependencies to build latest py-deeptools versions and
add a patch to run tests:
* Replace pypi URL with github URL to download tests
* Update dependency versions of py-pysam, py-matplotlib
* Add new py-deeptoolsintervals package as a dependency
* Add py-plotly and py-nose dependencies
* Patch setup.py to collect and run tests
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UnifyCR has been renamed to UnifyFS. Renaming the Spack package is
the last step in this process.
This renames the package and changes any UnifyCRs to UnifyFS within
the package.
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* py-pyfaidx: tweak dependencies; fixes #12445
* py-pyfaidx: add suggestions for #12446
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* This constexpr does not compile on summit.
I tried gcc6.4 and gcc7.4
* Add link the the llvm bug report.
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* camx: add version 6.50
* camx: remove unpredictable download URL
* camx: install manual and data files
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* Overhaul PyTorch package
* Flake8
* Distributed requires MPI, NCCL not specified correctly
* Binary was being specified incorrectly
* Run tests at install time
* Disable GLOO in addition to GLOO_IBVERBS
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Add version 2019.08.14 and rename 'develop' to 'master' to match the
git branch name (now that master is also a special name).
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Both address security issues:
https://groups.google.com/forum/#!topic/golang-nuts/fCQWxqxP8aA
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* Add option to disable QTDesigner plugin for qwt
Qt designer shouldn't be necessary to build downstream GUI code.
Currently `qwt^qt~tools` fails to build:
(darwin clang@10.0.1)
```
compiling qwt_designer_plugin.cpp
compiling qwt_designer_plotdialog.cpp
moc qwt_designer_plugin.h
moc qwt_designer_plotdialog.h
rcc qwt_designer_plugin.qrc
qwt_designer_plugin.h:23: Error: Undefined interface
make[1]: *** [moc/moc_qwt_designer_plugin.cpp] Error 1
make[1]: *** Waiting for unfinished jobs....
qwt_designer_plugin.cpp:17:10: fatal error: 'QDesignerFormEditorInterface' file not found
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make[1]: *** [obj/qwt_designer_plugin.o] Error 1
make: *** [sub-designer-make_default-ordered] Error 2
```
* Update VTK for newer VisIt and compiler versions
Several changes/enhancements to VTK package
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Add version 8.1.0 (default version for VisIt 3.x)
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Tweak VTK options for version 8 and VisIt:
- only add mpi4py version option when mpi4py is enabled
- Require object factory for downstream packages
- Remove OpenGL preference for VTK 8
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Combine +python3 into +python
The spec for using python3 should just be `+python^python@3:`.
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Remove unused VTK cmake argument on newer version
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Patch for Python 3 fails on VTK 6.1 (needed for VisIt 2.x):
```
==> Patch /rnsdhpc/code/spack/var/spack/repos/builtin/packages/vtk/python3.7-const-char.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/rnsdhpc/code/spack/var/spack/repos/builtin/packages/vtk/python3.7-const-char.patch' '-d' '.'
```
and as it happens, VisIt 2.13 is incompatible with Python 3 anyway.
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Fix compiler error:
As spack's configuration warning says, double-quotes can cause trouble:
```
==> [2019-07-29-11:47:55.269653] Warning: Quotes in command arguments can confuse scripts like configure.
The following arguments may cause problems when executed:
-DVTK_REQUIRED_OBJCXX_FLAGS=""
Quotes aren't needed because spack doesn't use a shell.
Consider removing them
```
They were being added to the compile line, causing clang to think it was
asked to compile an empty file:
```
cd /private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-3nk9bwe_/spack-build/Rendering/OpenGL && /rnsdhpc/code/spack/lib/spack/env/clang/clang++ -DVTK_IN_VTK -DvtkRenderingOpenGL_EXPORTS -F/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks -DGLX_GLXEXT_LEGACY -O2 -g -DNDEBUG -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -fvisibility=hidden -fvisibility-inlines-hidden "" -o CMakeFiles/vtkRenderingOpenGL.dir/vtkCocoaGLView.mm.o -c /rnsdhpc/code/spack/var/spack/stage/vtk-6.1.0-b2mj276iz77fadisv2me365qe27t3gxt/spack-src/Rendering/OpenGL/vtkCocoaGLView.mm
clang: error: no input files
make[2]: *** [Rendering/OpenGL/CMakeFiles/vtkRenderingOpenGL.dir/vtkCocoaGLView.mm.o] Error 1
```
* Modernize/PEP-8 visit package statements
* Add new VisIt version and patches for building on Mac
- VisIt's cmake assumes a 'vtk(tiff|jpeg|png)' *library* target exported by
VTK, but VTK 8.1.x on my configuration seems to have these as header-only
targets with library dependencies.
- Explicitly add QT path to visit configure: Without this, somehow
`${VISIT_QT_DIR}` was being set to empty, so that the build failed with
`missing /bin/moc`.
- VisIt assumes that if it isn't being built statically, QWT has been built as
a mac Framework. QWT actually is built as a framework based on whether QT
itself is.
Error message:
```
-- Looking for QWT
CMake Error at CMake/SetUpThirdParty.cmake:131 (MESSAGE):
Include Directory for QWT (/rnsdhpc/code/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.1-apple/qwt-6.1.3-bmfxirweplzhjoiil4rw632evkyteuwk/lib/qwt.framework/Versions/Current/Headers) does not exist.
Call Stack (most recent call first):
CMake/FindQwt.cmake:57 (SET_UP_THIRD_PARTY)
CMakeLists.txt:1251 (INCLUDE)
```
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* ADIOS 2.4.0: Add new Deps
Version 2.4.0 of ADIOS2 added new dependencies that are not
yet listed as `depends_on` and/or disabled otherwise. Add them
now to avoid picking them up from system paths, e.g. `libpng`.
* ADIOS2: Variant Defaults Change
* Python: False by default
* ADIOS1: only used prior to 2.3.0
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Version 60.1 fails to build on linux with clang@7.0.1 and clang@8.0.0:
```
digitlst.cpp:508:9: error: use of undeclared identifier 'freelocale'
freelocale(gCLocale);
^
clang++ ... coll.cpp
digitlst.cpp:520:26: error: use of undeclared identifier 'LC_ALL_MASK'
gCLocale = newlocale(LC_ALL_MASK, "C", (locale_t)0);
^
clang++ ... sortkey.cpp
clang++ ... bocsu.cpp
clang++ ... ucoleitr.cpp
clang++ ... ucol.cpp
clang++ ... ucol_res.cpp
2 errors generated.
clang++ ... ucol_sit.cpp
clang++ ... collation.cpp
*** Failed compilation command follows:
----------------------------------------------------------
/projects/spack/lib/spack/env/clang/clang++ -D_REENTRANT
-DU_HAVE_ELF_H=1 -DU_HAVE_ATOMIC=1 -DU_HAVE_STRTOD_L=1
-DU_HAVE_XLOCALE_H=1 -I. -I../common -DU_ATTRIBUTE_DEPRECATED=
-DU_I18N_IMPLEMENTATION -std=c++11 -W -Wall -pedantic -Wpointer-arith
-Wwrite-strings -Wno-long-long -c -DPIC -fPIC -o digitlst.o digitlst.cpp
--- ( rebuild with "make VERBOSE=1 all" to show all parameters )
--------
make[1]: *** [digitlst.o] Error 1
make[1]: *** Waiting for unfinished jobs....
clang++ ... collationsettings.cpp
make[1]: Leaving directory
`/build/s3j-spack/spack-stage/spack-stage-k9ba3gqo/spack-src/source/i18n'
make: *** [all-recursive] Error 2
```
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* bolt: add new versions
* bolt: add argobots dependency
From this version, BOLT uses an external Argobots, not a builtin one.
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* UnifyCR: update dependencies and build options
This adds some specifics about dependencies and conflicts and adds
additional build options and variants. UnifyCR now also has limited
fortran support.
* Remove debug statements condition on Spack debug
Change debug print statements to now be turned on when the -g cflag
is found in the flags the user sets.
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* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* umoci depends on go-md2man
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* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* new package: device-mapper
* address comments by @hartzell
* extraneous whitespace
* capitalization
* device-mapper -> lvm2
* unprovide device-mapper
* address comments by @adamjstewart
* address comments by @adamjstewart
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* r-rmutil: new package at 1.1.3
* r-rmutil: use cloud.r-project.org
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* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* new package: go-md2man
* address comments by @adamjstewart
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* remove -minline-all-stringops when target is arm.
* change int3 to raise(SIGTRAP) when target is arm.
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* add new package: py-python-magic
* tidy up
* Update var/spack/repos/builtin/packages/py-python-magic/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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