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2021-01-22isaac: add v1.5.1 and v1.5.2 (#21216)René Widera1-0/+2
2021-01-22AMD ROCm: Bump rocm-tensile with 3.9.0, 3.10.0, 4.0.0 releases (#20439)arjun-raj-kuppala2-13/+113
2021-01-22Add Quantum ESPRESSO version 6.7. (#21192)Dominik Gresch1-1/+4
2021-01-22add patch for not linking to clang rt bulitin lib, and apply patches to ↵Harmen Stoppels5-13/+141
3.9.0 too (#20937)
2021-01-21mumps: Fix for problematic src/makefile patch (#20590) (#20758)Tom Payerle3-1/+28
* mumps: Fix for problematic src/makefile patch (#20590) Minor change in src/Makefile between 5.2.0 and 5.3.3 causing patch to break. Split into 2 patchfiles * mumps: Additional patch for fixing #20590 This is to fix issue wherein build fails on Ubuntu due to undefined symbols, despite symbols being included in other libraries referenced on the compilation line. I believe the issue is that the inclusion of libsmumps.so was (due to my original patch) causing libmumps_common.so to be automatically loaded, but since libpords.so was not also required, the error was occuring. I have added libpords.so along with libmumps_common.so to be explicit dependencies of libsmumps.so, etc., which seems to resolve the issue.
2021-01-21amrex: fix missing hdf5 dependency (#20714)mic841-0/+1
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-01-21hdf: build with gcc10 (#20773)Kurt Sansom1-0/+8
2021-01-21ecp-data-vis-sdk: Disable broken cinema variant (#21204)Chuck Atkins1-1/+3
2021-01-21miniconda3: add ppc64le package version (#21196)Baptiste Jonglez1-11/+30
It requires reorganizing version definitions to facilitate adding new architectures. This is inspired from the cuda package.
2021-01-21Add develop versions of faodel and zfp (#21201)Omar Padron2-0/+3
* add master version of faodel * add develop version of zfp
2021-01-21fix build failure due to #20759 change (#21185)Sreenivasa Murthy Kolam1-1/+13
2021-01-21catalyst: Fix for aarch64 (#21187)Tomoyasu Nojiri1-1/+1
2021-01-21Add support for building with an FFT layer in LBANN. Updated the (#21184)Brian Van Essen3-4/+9
HWLOC requirements to properly include CUDA and NVML variants as appropriate.
2021-01-21install lib/headers option support (#21186)arjun-raj-kuppala1-1/+6
2021-01-21abinit: add version 8.10.2. (#21188)Tomoki, Karatsu1-0/+1
2021-01-21[assimp] add new version 5.0.1 (#21191)vvolkl1-0/+1
2021-01-21Always set SPLA_OMP and SPLA_STATIC (#21195)Harmen Stoppels1-11/+4
2021-01-21precice: Add version 2.2.0 (#21166)Gerasimos Chourdakis1-5/+6
2021-01-21[py-numba] added version 0.51.1 (#21182)Jen Herting1-4/+6
* [py-numba] added version 0.51.1 * [py-numba] updated llvmlite dependencies
2021-01-21Plumed: Add a new ArrayFire variant. (#20624)Rémi Lacroix1-5/+24
2021-01-21ArrayFire improvements (#20615)Rémi Lacroix1-1/+23
* ArrayFire: Add version 3.7.2. * ArrayFire: Allow using MKL as the FFTW provider. * ArrayFire: Ensure the libraries are properly found. The required backend(s) can be specified in the library query.
2021-01-21spfft: add version 1.0.1 (#21193)Simon Frasch1-0/+1
2021-01-20openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK (#21180)Scott McMillan1-0/+8
* openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK * Update var/spack/repos/builtin/packages/openssl/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Scott McMillan <smcmillan@nvidia.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20libcap-ng: fix detect python. (#21162)Toyohisa Kameyama1-1/+22
* libcap-ng: fix detect python. - add python variant. - add --with-python and --with-python3 configure option. * fix style. * - Add python variant. - change - to --
2021-01-20util-linux: Add ncurses depend (#21165)Tomoyasu Nojiri1-0/+1
2021-01-20systemtap: Add depend (#21163)Tomoyasu Nojiri1-1/+4
* systemtap: Add depend * systemtap: Fix depend
2021-01-20libevent: Remove compiler flags incompatible with NVIDIA HPC SDK (#21181)Scott McMillan1-0/+12
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20SEACAS: New version v2021-01-20 (#21178)Greg Sjaardema1-0/+3
Added a new version due to new application `nas2exo` and also adding the build of `slice` if `+applications` is specified.
2021-01-20[py-statsmodels] added version 0.12.1 and updated dependencies accord… ↵Jen Herting1-1/+7
(#21175) * [py-statsmodels] added version 0.12.1 and updated dependencies accordingly * [py-statsmodels] added python requirements for new version and fixed formatting for readability
2021-01-20Mirror current E4S hypre test suite test as a smoke test (#20484)Sergei Shudler1-0/+23
2021-01-20Fix PVM dependencies (#20951)bryanherman1-1/+12
* added m4 dep to PVM recipe * added libtirpc dep to PVM recipe * decode str or bytestr string to unicode * Resolved comments from @adamjstewart on setup_build_environment
2021-01-20Propagate SCR resource_manager flag to libyogrt dependency (#21168)Robert Brunner1-0/+2
* When the SCR spec specifies a resource_manager=SLURM or LSF flag, propagate the spec through to the libyogrt scheduler=slurm or lsf * Use libyogrt default scheduler option when the SCR spec does not specify LSF or SLURM
2021-01-20Perl: NVIDIA HPC SDK updates (#21177)Scott McMillan2-1/+3
* Perl: NVIDIA HPC SDK updates * fix indentation Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20Plumed: Ensure the Python interfaces are also built with Spack's wrappers. ↵Rémi Lacroix1-0/+8
(#20625)
2021-01-20PETSc: Add a new ptscotch variant. (#20699)Rémi Lacroix1-0/+19
Currently the Parmetis wrapper is disabled which means nested dissection cannot be used with PTScotch.
2021-01-20updated relion package for new versions (#21155)Evan Bollig1-8/+12
* updated relion for new versions * Switched to checksum versions * Enabled spack tracking for MKL and TBB when CPU optimizations are enabled * Added variants to control MKL FFT and Ppatent feature * Replaced tags with sha256 for older versions an and switched to virtual packages
2021-01-20py-funcy: new recipe (#21136)Andrew-Dunning-NNL1-0/+19
* py-funcy: new recipe * Update var/spack/repos/builtin/packages/py-funcy/package.py add build and run python dependencies Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20qwt: Fix qt depend (#21161)Tomoyasu Nojiri1-1/+1
2021-01-20z3: New version 4.8.9 (#21167)Erik Schnetter1-0/+2
2021-01-20openjdk: Add ppc64le package (#21173)Baptiste Jonglez1-2/+3
2021-01-20fix an issue where some variants were not being concatenated correctly (#21174)Omar Padron1-1/+3
2021-01-20py-iminuit: update version to fix test error (#21143)darmac1-1/+3
* py-iminuit: update version to fix test error * py-iminuit: update py-numpy limitation * py-iminuit: fix dependency mistake
2021-01-20py-mikado: Add version 1.2.4 (#20678)Tomoyasu Nojiri3-21/+20
* py-pysam: Add version 0.15.3 * py-biopython: Add version 1.78 * py-mikado: Add version 1.2.4 * py-mikado: Reflection of review points. * py-biopython: Add python depend * py-mikado: Fix depend * py-mikado: Add py-tabulate depend
2021-01-20[WIP] relocate.py: parallelize test replacement logic (#19690)Nathan Hanford1-0/+35
* sbang pushed back to callers; star moved to util.lang * updated unit test * sbang test moved; local tests pass Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-01-19r-farver: Fix checksum for 2.0.1 (#20897)Tomoyasu Nojiri1-1/+1
2021-01-19fix typo in ec-data-vis-sdk package (#21156)Omar Padron1-2/+2
2021-01-19fixing outdated metis link (#21003)mlawsonca1-11/+4
* fixing outdated metis link * updated url to the official website since the previous url was a GitHub repo that is an unofficial mirror that only contains the latest version
2021-01-19py-pyjnius: new recipie (#21150)Andrew-Dunning-NNL1-0/+20
2021-01-19py-dictdiffer: new recipe (#21151)Andrew-Dunning-NNL1-0/+19
* py-dictdiffer: new recipie * Update var/spack/repos/builtin/packages/py-dictdiffer/package.py add correct setuptools dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-19py-pytest-arraydiff: new recipie (#21152)Andrew-Dunning-NNL1-0/+21
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