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2020-08-04Prefer dynamic linking for Python in vim when +python (#17870)Robert Underwood1-2/+2
Previously the python package for vim used static linking, and depending on what system libraries were available and linked against could cause symbol conflicts for python leading to segfaults in loading c modules in the standard library (i.e. heapq). This patch address this issue by dynamically linking them.
2020-08-04Add openssh runtime dependency to git (#17872)Robert Underwood1-0/+1
If you use git to clone a repository ssh, git transfers control the ssh binary available on your path, if that ssh binary was built with contradictory version of openssl/kerberos, then your git commands will fail.
2020-08-04py-keras-preprocessing: add new version (#17735)Adam J. Stewart1-9/+10
2020-08-04abyss 2.1.4: fails to build with GCC 8 (#17614)t-nojiri2-3/+25
* abyss 2.1.4: fails to build with GCC 8 * abyss 2.1.4: fails to build with GCC 8 * abyss 2.1.4: Revise the points indicated by the review.
2020-08-04[delphes] pythia8 variant and cleanup (#17664)vvolkl1-8/+9
* [delphes] new version * [delphes] pythia8 variant * [delphes] flake8
2020-08-04Add Espanso Package and its xdotool Dependency (#17586)Zicklag2-0/+67
2020-08-04sirius (new versions, fixes), q-e-sirius (new package), nlcglib (new ↵Simon Pintarelli3-4/+399
package) (#17844) * sirius, update versions, fixes, add missing options - sirius/spfft: depend on fftw-api - cleanup +shared option - sirius add option for memory pool - sirius add version 6.5.3 and 6.5.4 - sirius: add spfft dependency for @master, @develop * add nlcglib package Robust wave function optimization for SIRIUS. * add q-e-sirius package based on q-e package * Update var/spack/repos/builtin/packages/q-e-sirius/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * nlcglib: pass nvcc_wrapper to cmake * Add 6.5.6 * Make flake8 happy Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-04hpctoolkit: add v2020.08.03 (#17860)Mark W. Krentel1-5/+2
Add version 2020.08.03. Adjust the cuda args. The --with-cupti arg was redundant, even for old versions of hpctoolkit.
2020-08-04AWS ParallelCluster: added v2.8.1 (#17866)Enrico Usai1-1/+2
2020-08-04Added versions for cuDNN 8.0.2. (#17862)Brian Van Essen1-0/+14
2020-08-04subread: extend support for aarch64 to v2.0.0 (#17864)t-nojiri1-1/+1
2020-08-03new plumed versions 2.5.5 and 2.6.1; bumped default to 2.5.5 (#17850)g-mathias1-1/+3
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-03HPX: fix wrong method name and use define/define_from_variant methods (#17851)albestro1-65/+31
* bug fix: wrong method name * refactoring using define_from_variant and define * flake8 style fix * revert change string format
2020-08-03Bump cmake (#17852)Harmen Stoppels1-0/+1
2020-08-03amrex:: new version 20.08 (#17856)mic841-0/+1
2020-08-03canu: fix depends issue & using java instead of jdk (#17599)darmac1-1/+3
* canu: fix depends issue & using java instead of jdk * Update var/spack/repos/builtin/packages/canu/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03Add new package: ycsb (#17788)darmac1-0/+35
* Add new package: ycsb * refine mongodb-async-driver jar path
2020-08-03Add new package: slider (#17799)darmac1-0/+39
* Add new package: slider * refine version check
2020-08-03Add new package: giraph (#17790)darmac1-0/+34
* Add new package: giraph * refine version check
2020-08-03Packages/py colorspacious (#17623)Claire Guilbaud1-0/+20
* typo error correction * Adding recipe for `colorspacious` (a python package) * Copyright year changed * revert last commit on basic_usage.rst * better with a good description * fix according to failed test * Update var/spack/repos/builtin/packages/py-colorspacious/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-colorspacious/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03py-astropy: add version 4.0.1.post1, update header finding (#17838)Adam J. Stewart1-4/+13
* Add install tests * Add pkgconfig dependency to find dependency headers (specifically wcslib)
2020-08-03ERFA (package): add version 1.7.0 (#17837)Adam J. Stewart1-8/+4
2020-08-03 Added Go 1.14.6 and 1.13.14 (#17574)Paul1-1/+3
2020-08-02python: RPATH on fj (#17783)ketsubouchi3-0/+29
* python: RPATH on fj * python: patch _is_gcc
2020-08-02Updates to jsonschema to include newer versions. (#17613)Francesco Di Natale2-13/+18
* Additional versions of py-jsonschema. * Tweak to force Maestro to use jsonschema@3.2.0: * Correction of whitespace (flake8 error). * Merges importlib's Python version conditons Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02Add new versions of spfft (#17841)Harmen Stoppels1-3/+6
* Add new versions of spfft * Extend CudaPackage and use virtual fftw package Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch> * Add CUDA 11 compatibility note * Depend on older cuda <= 10 for spfft <= 0.9.11 Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
2020-08-02fix isaac-server dependency (#17569)René Widera1-1/+1
isaac-server can not find jansson if jansson2.10+ is used.
2020-08-02Gnuplot also depends on libsm with +wx. (#17575)Jon Rood1-0/+1
2020-08-02krb5: fix url parse and update versions (#17581)darmac1-3/+16
2020-08-02mariadb: add depends package krb5 (#17583)darmac1-0/+1
2020-08-02new package: ibm databroker (#17591)Harsh Bhatia3-0/+110
2020-08-02Add bindist tests for macOS.Patrick Gartung3-37/+96
2020-08-02Improve HPX package management of coroutines implementation (#17654)albestro1-1/+25
* introduce logic for boost+context dependency and generic_context variant * fix OTF2 instrumentation minor problem * default coroutine impl depends on platform * fix flake8 * add reference to ~generic_coroutines conflict info * Update var/spack/repos/builtin/packages/hpx/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02Octopus: Add support for version 10.0. (#17782)Rémi Lacroix1-3/+26
* Octopus: Add support for version 10.0. Fix compilation when using the MKL as a provider for BLAS/LAPACK. Octopus will now detect that the MKL also provides the FFTW API and will refuse to compile when both the FFTW library and the MKL are given to the configure script. * Octopus: Add supported version range for libxc.
2020-08-01berkeley-db: add version 18.1.40, update build options in package (#17839)Todd Gamblin1-13/+21
* berkeley-db: add version 18.1.40, update build options in package * combine adamjstewart's changes Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01New package: kassiopeia (#17742)Wouter Deconinck1-0/+65
* [kassiopeia] New package * [kassiopeia] Remove master branch, update dependencies * Update var/spack/repos/builtin/packages/kassiopeia/package.py Unable to test since I do not have a license to intel-parallel-studio, but I see no reason why it would not work if. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [kassiopeia] depends_on mpi Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [kassiopeia] cmake_args with self.spec.satisfies and elses * [kassiopeia] args.extend -> args.append Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01h5py does not correctly recognize hdf5 version on Cray (#17831)Simon Pintarelli1-1/+2
* h5py: explicitly specify version hdf5@1.10.5 on Cray is wrongly detected as 1.8.4. * Update var/spack/repos/builtin/packages/py-h5py/package.py Thanks. Also had this first, then CI was complaining about line length ... Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01elfutils: add version 0.180 (#17835)Mark W. Krentel1-0/+1
2020-08-01Hotfix: move CUDAHOSTCXX (#17826)Axel Huebl1-2/+3
* Hotfix: move CUDAHOSTCXX Set only in dependent packages. * dependent compiler
2020-08-01Add new package: findbugs (#17825)darmac1-0/+26
2020-08-01Openfst: upgrade version and gcc constraint (#17830)darmac1-1/+2
* openfst: upgrade version and gcc constraint * refine version format
2020-07-31cuDNN (package): add version 7.6.5.32-10.2-linux-ppc64le (#17821)Brian Van Essen1-0/+2
2020-07-31Add libxc 5.0.0 (#17807)Harmen Stoppels3-3/+88
With experimental CUDA support and some patches to make it compile. Currently +shared and +cuda conflict, this has to be fixed upstream.
2020-07-31meson: Add 0.55.0 (#17816)Michael Kuhn1-0/+1
2020-07-31py-wheel: add new version (#17819)Adam J. Stewart1-3/+8
2020-07-31py-setuptools: add new version (#17818)Adam J. Stewart1-1/+2
2020-07-31py-pip: add new version (#17817)Adam J. Stewart1-3/+8
2020-07-31py-torchvision: add v0.7.0Adam J. Stewart1-7/+28
2020-07-31PyTorch: add v1.6.0Adam J. Stewart1-0/+2
2020-07-31Pandas: add v1.1.0Adam J. Stewart1-1/+5
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