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2022-02-21git: install keychain helper on macOS (#29090)Seth R. Johnson1-2/+9
2022-02-21Various package fixes for macOS (#29024)Seth R. Johnson6-5/+44
* trilinos: disable dl on macOS * py-sphinx-argparse: add explicit poetry dependency * libzmq: fix libbsd dependency libbsd is *always* required when +libbsd (introduced in #28503) . #20893 had previously removed the macos dependency because libbsd wasn't always enabled. Libbsd support is only available after 4.3.2 so change it to a conflict rather than bumping the dependency. * hdf5: work around GCC11.2 monterey fortran bug * go-bootstrap: mark conflict for monterey
2022-02-20perl-fth: add the external find feature for perl-fth and new release (#28886)Olivier Cessenat1-0/+10
2022-02-19expat: Add latest release 2.4.5 with security fixes (#29086)Sebastian Pipping1-2/+3
2022-02-19silo package: fix patch for 4.11-bsd (#29075)Seth R. Johnson1-1/+1
There's a check to skip for version '10.2-bsd', but the patch does not apply to '11-bsd' either.
2022-02-19binutils: add v2.38 (#29067)Harmen Stoppels1-0/+1
2022-02-19New package: ovito (#28787)downloadico1-0/+24
2022-02-18py-ipykernel: add 6.9.1 (#29071)Manuela Kuhn1-17/+22
* py-ipykernel: add 6.9.1 * Add py-jupyter-core version restriction
2022-02-18Add/remove conflicts for Apple silicon (M1/aarch64) (#28850)Seth R. Johnson5-11/+16
* go: remove broken bootstrapping for macos aarch64 * qt: mark apple silicon conflict * trilinos: remove apple silicon conflict * Apply review suggestions * python: add apple silicon conflict for 2.7
2022-02-18r-distributional package: add version 0.3.0 (#29037)Manuela Kuhn1-0/+1
2022-02-18kokkos@:3.5.00 +sycl conflicts with %dpcpp@2022.0.0 (#29055)eugeneswalker1-0/+3
2022-02-18py-humanize: add 4.0.0 (#29034)Manuela Kuhn1-0/+2
2022-02-18py-tensorflow-estimator: new versions (#28093)Glenn Johnson1-1/+9
* py-tensorflow-estimator: new versions * Set proper constraint on py-funcsigs Only needed when the python version is less than 3.3.
2022-02-18py-keras: new versions (#27991)Andrew W Elble2-8/+107
* py-keras: new versions * incorporate feedback * adjust deps, add url_for_version() * change to use pip * remove build phase / remove unnecessary TEST_TMPDIR envvar * switch url_for_version around install, not build
2022-02-18py-tensorflow: add versions 2.5.0 and 2.6.0 (#27138)Glenn Johnson9-83/+373
* py-tensorflow: add versions 2.5.0 and 2.6.0 - add version 2.5.0 - add version 2.6.0 - add patches for newer protobuf - set constraints * Remove import os. left over from testing * Remove unused patch file * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add py-clang dependency * Adjust py-clang constraint * Build tensorflow with tensorboard - tensorflow - added 2.6.1 and 2.6.2 versions - tensorboard - have bazel use number of jobs set by spack - add versions and constraints - new package: py-tensorboard-data-server - use wheel for py-tensorboard-plugin-wit This package can not build with newer versions of bazel that are needed for newer versions of py-tensorboard. * Update var/spack/repos/builtin/packages/py-clang/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove empty line at end of file * Fix import sorting * Adjust python dependencies on py-clang * Add version 2.7.0 of pt-tensorflow and py-tensorboard * Adjust bazel constraints * bazel-4 support begins with py-tensorflow-2.7.0 * Adjust dependencies * Loosen cuda constraint on versions > 2.5 Tensorflow-2.5 and above can use cuda up to version 11.4. * Add constraints to patch The 0008-Fix-protobuf-errors-when-using-system-protobuf.patch patch should only apply to versions 2.5 and above. * Adjust constraints - versions 2.4 and below need protobuf-3.12 and below - versions 2.4 and above can use up to cuda-11.4 - versions 2.2 and below can not use cudnn-8 - the null_linker_bin patch should only be applied to versions 2.5 and above. * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix py-grpcio dependency for version 2.7 Also, make sure py-h5py mpi specs are consistent. * Add llvm as run dependency. * Fix python spec for py-tensorboard * Fix py-google-auth spec for py-tensorboard * Do not override the pip spec for tensorboard-plugin-wit * Converted py-tensorboard-plugin-wit to wheel only package * Fix bazel dependency spec in tensorflow * Adjust pip masks - allow tensorboard to be specified in pip constraints - mask tensorflow-estimator * Remove blank line at end of file * Adjust pip constraints in setup.py Also, adjust constraint on a patch that is fixed in 2.7 * Fix flake8 error Adjust formatting for consistency. * Get bazel dep right * Fix old cudnn dependency, caught in audit test * Adjust the regex to ensure proper line is changed * Add py-libclang package - Stripped the py-clang package down to just version 5 - added comments to indicate the purpose of py-clang and that py-libclang should be preferred - set dependencies accordingly in py-tensorflow * Remove cap on py-h5py dependency for v2.7 * Add TODO entries for tensorflow-io-gcs-filesystem * Edit some comments * Add phases and select python in PATH for tensorboard-data-server * py-libclang - remove py-wheel dependency - remove raw string notation in filter_file * py-tensorboard-data-server - remove py-wheel dep - remove py-pip dep - use python from package class * py-tensorboard-plugin-wit - switch to PythonPackage - add version 1.8.1 - remove unneeded code * Add comment as to why a wheel is need for tensorboard-plugin-wit * remove which pip from tensorboard-data-server * Fix dependency specs in tensorboard * tweak dependencies for tensorflow * fix python constraint * Use llvm libs property * py-tensorboard-data-server - merge build into install - use std_pip_args * remove py-clang dependency * remove my edits to py-tensorboard-plugin-wit Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-18spack external find: change default behavior (#29031)Massimiliano Culpo20-3/+40
See https://github.com/spack/spack/issues/25353#issuecomment-1041868116 This commit changes the default behavior of ``` $ spack external find ``` from searching all the possible packages Spack knows about to search only for the ones tagged as being a "build-tool". It also introduces a `--all` option to restore the old behavior.
2022-02-18libbson, mongo-c-driver: add 1.21.0 (#28978)Michael Kuhn2-0/+3
2022-02-18curl: add v7.81.0 (#28973)Michael Kuhn1-0/+1
2022-02-18spfft: add version 1.0.6 (#29047)Simon Frasch1-0/+3
2022-02-18py-fasteners: add 0.17.3 (#28988)Manuela Kuhn1-4/+7
2022-02-18util-linux(-uuid): add v2.37.4 (#28985)Michael Kuhn2-0/+2
2022-02-18mariadb-c-client: add v3.2.6 (#28981)Michael Kuhn1-0/+1
2022-02-18sqlite: add v3.37.2 (#28984)Michael Kuhn1-1/+4
2022-02-17pcre: add v8.45 (#28979)Michael Kuhn1-0/+1
2022-02-17pcre2: add v10.39 (#28980)Michael Kuhn1-1/+2
2022-02-17rdma-core: add v39.0 (#28987)Michael Kuhn1-0/+1
2022-02-17abinit: Add version 9.6.1 and support fujitsu compiler and fujitsu-fftw. ↵Toyohisa Kameyama3-14/+636
(#28474) * abinit: Add version 9.6.1 and support fujitsu compiler and fujitsu-fftw. * fix conflicts +openmp. * Add openmp conflicts.
2022-02-17py-charset-normalizer: add 2.0.12 (#28945)Manuela Kuhn1-0/+1
2022-02-17py-fiscalyear: add v0.4.0 (#29025)Adam J. Stewart1-0/+3
2022-02-17py-fonttools: add 4.29.1 and fix tests (#29032)Manuela Kuhn1-0/+10
2022-02-17py-gevent: add 21.12.0 (#29033)Manuela Kuhn1-0/+1
2022-02-17llvm: add libs property (#28621)Glenn Johnson1-2/+8
* llvm: add libs property * Use llvm-config helper for libs property
2022-02-17zstd: add v1.5.2 (#28986)Michael Kuhn1-0/+1
2022-02-17binutils: add external detection (#29022)Tom Scogland1-0/+9
2022-02-16libmd: add v1.0.4 (#28971)Michael Kuhn1-0/+1
2022-02-16libbsd: add v0.11.5 (#28969)Michael Kuhn1-0/+1
2022-02-16libffi: add v3.4.2 (#28970)Michael Kuhn1-4/+5
2022-02-16intel-gtpin: new package (#28542)Mark W. Krentel1-0/+77
2022-02-16Add 'stable' to the list of infinity version names. (#28772)Mark W. Krentel1-5/+5
* Add 'stable' to the list of infinity version names. Rename libunwind 1.5-head to 1.5-stable. * Add stable to the infinite version list in packaging_guide.rst.
2022-02-16py-etelemetry: add 0.3.0 (#28983)Manuela Kuhn1-0/+2
* py-etelemetry: add 0.3.0 * Update var/spack/repos/builtin/packages/py-etelemetry/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-16py-filelock: add 3.5.0 (#29006)Manuela Kuhn1-1/+6
2022-02-16py-tomli-w: add new package (#29007)Manuela Kuhn1-0/+18
2022-02-16py-build: python+ensurepip not required (#28562)Adam J. Stewart2-1/+15
* py-build: python+ensurepip not required * Add patch to fix issue when pip is in PYTHONPATH
2022-02-16mesa: enable the `swr` variant if +llvm, instead of using conflicts (#29008)Massimiliano Culpo2-4/+2
* mesa: enable the `swr` variant if +llvm, instead of using conflicts fixes #28994
2022-02-16Trilinos: Add UVM variant (#28949)psakievich1-3/+6
13.2+ still supports UVM as an option.
2022-02-16flecsi: update constraints and add new dependency (#28788)Robert Pavel1-6/+8
Updated flecsi constraints to better match internal development. Also added dependency on `lanl-cmake-modules` for flecsi@2.1.1:
2022-02-16py-archspec: add versions up to v0.1.3 (#28928)Carson Woods1-0/+3
2022-02-16storm: add v2.3.0 (#28957)haralmha1-1/+2
2022-02-16VTK-m: Allow building +shared+cuda_native @1.7: (#28877)kwryankrattiger1-1/+3
2022-02-16gh: add versions up to v2.5.1 (#28958)Tom Scogland1-0/+6