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2021-10-12binutils: fix parallel make for version 2.36 (#26611)Mark W. Krentel2-7/+57
There was a bug in 2.36.* of missing Makefile dependencies. The previous workaround was to require 2.36 to be built serially. This is now fixed upstream in 2.37 and this PR adds the patch to restore parallel make to 2.36.
2021-10-12mfem: patch @4.3.0 to support hypre up to v2.23.0 (#26640)Veselin Dobrev2-1/+577
2021-10-12py-niworkflows: add new package (#26639)Manuela Kuhn1-0/+63
* py-niworkflows: add new package * Update var/spack/repos/builtin/packages/py-niworkflows/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove unnecessary comment Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-12py-nistats: add new package (#26662)Manuela Kuhn1-0/+28
* py-nistats: add new package * Update var/spack/repos/builtin/packages/py-nistats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove `conflicts` * remove test dependencies Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-12spack: Add package (#25979)Harmen Stoppels1-0/+92
* Make python 2 use 'from __future__ import absolute_import' to allow import spack.pkgkit * Add Spack * Improve ranges
2021-10-12babelflow, parallelmergetree: add the current versions (#26660)Sergei Shudler2-3/+10
2021-10-12phist: force MPI compiler wrappers (#26312)Jonas Thies1-0/+18
* packages/phist, re #26002: force phist to use MPI compiler wrappers (copied from trilinos package) * packages/phist re #26002, use cmake-provded FindMPI module only * packages/phist source code formatting * packages/phist: set MPI_HOME rather than MPI_BASE_DIR, thanks @sethri. * phist: delete own FindMPI.cmake for older versions (rather than patching it away) * packages/phist: remove blank line * phist: adjust sorting of imports * phist: change order of imports
2021-10-12madgraph5amc: Add changes fixing bugs shown by gcc10 (#26643)Joseph Wang2-0/+126
2021-10-12ispc: update development branch name and limit to llvm@12 (#26676)Martin Aumüller1-2/+3
1.16 and 1.16.1 are not compatible with LLVM 13
2021-10-12ASP-based solver: decrease the priority of multi-valued variant optimization ↵Massimiliano Culpo2-0/+39
for root (#26677) The ASP-based solver maximizes the number of values in multi-valued variants (if other higher order constraints are met), to avoid cases where only a subset of the values that have been specified on the command line or imposed by another constraint are selected. Here we swap the priority of this optimization target with the selection of the default providers, to avoid unexpected results like the one in #26598
2021-10-12damask{,-grid,-mesh}: add @3.0.0-alpha5 (#26570)Martin Diehl4-2/+22
2021-10-12gromacs: Add Gromacs 2020.6 and Plumed 2.7.2 (#26663)Maciej Wójcik2-2/+7
2021-10-12boost: Fix build of 1.53:1.54 with glibc>=2.17 (#26659)Bernhard Kaindl1-0/+4
Fix missing declaration of uintptr_t with glibc>=2.17 in 1.53:1.54 See: https://bugs.gentoo.org/482372
2021-10-11py-templateflow: add 0.4.2 (#26471)Manuela Kuhn1-5/+9
* py-templateflow: add 0.4.2 * py-templateflow: fix python dependency for 0.4.2 * py-templateflow: remove wheel dependency for older versions
2021-10-11py-pysurfer: add new package (#26638)Manuela Kuhn1-0/+27
2021-10-12py-pandas: fix installation and tests for versions @:0.25 (#26668)Manuela Kuhn1-15/+11
2021-10-12fleur: new package (#26631)Daniele Cesarini1-0/+182
2021-10-11Faodel: Update for the v1.2108.1 release (#26516)Todd Kordenbrock1-10/+12
2021-10-12frontier-client: add missing openssl dependency (#26636)Valentin Volkl1-0/+1
2021-10-12openblas: fix build on riscv64 (#26565)Kevin Pedretti1-2/+10
OpenBLAS now has support for the riscv64 architecture. This commit extends the spack openblas package.py to handle building on riscv64.
2021-10-11bcl2fastq2: add boost@1.55 as default boost dependency (#26655)Alan Sill1-1/+1
When PR #26659 is merged, boost version boost@1.54.0 will be available for build too. Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-11motif package: fix linking the simple_app demo program (#26574)Bernhard Kaindl1-0/+7
2021-10-11New Package Qualimap:2.2.1 (#26615)Desmond Orton1-0/+26
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-11GNU parallel package: add version 20210922 (#26591)Derek Ryan Strong1-0/+1
2021-10-11openCARP packages: add version 8.1 (#26602)Marie Houillon3-4/+7
2021-10-11mapserver: Add missing deps: giflib and postgresql (#26619)Bernhard Kaindl1-0/+2
2021-10-11llvm: add conflict for newer apple-clang versions (#26633)Seth R. Johnson1-1/+2
2021-10-11mesa: gallium fails with llvm@13: use 'llvm@6:12', add mesa@21.2.3 (#26627)Bernhard Kaindl1-1/+2
The software rasterizer of Mesa's Gallium3D(even @21.2.3) fails to build with llvm@13.0.0, use: depends_on('llvm@6:12', when='+llvm')
2021-10-11kahip: update build system to cmake for v3.11, retain scons for older ↵Matthew Archer1-6/+17
versions (#25645) * kahip: update to cmake for v3.11, retain scons for older versions * kahip: update build system to cmake for v3.11, retain SCons for older versions * address PR comments and add maintainer * address PR comments - correct version to 2.10, add deprecated and url, and remove scons version
2021-10-11Update of siesta libs (#26489)Daniele Cesarini3-7/+78
2021-10-11Add new versions of kiwisolver (#26597)iarspider1-0/+9
2021-10-10New package: py-cppy (required for py-kiwisolver) (#26645)iarspider1-0/+20
2021-10-09py-nilearn: add 0.4.2 and 0.6.2 (#26635)Manuela Kuhn1-16/+61
2021-10-09py-pyvistaqt: add new package (#26637)Manuela Kuhn1-0/+20
2021-10-09environment-modules: fix build (#26632)Michael Kuhn1-2/+2
PR #25904 moved the `--with-tcl` option to only older versions. However, without this option, the build breaks: ``` checking for Tcl configuration... configure: error: Can't find Tcl configuration definitions. Use --with-tcl to specify a directory containing tclConfig.sh ```
2021-10-09idna: Add versions 2.9 for sierrapy #23768 and 3.2(current) (#26616)Bernhard Kaindl1-1/+4
py-sierrapy was merged accidentally and pins its versions to exact numbers. Add 2.9 as the version for sierrapy and the current 3.2
2021-10-09py-awkward: add py-yaml as depends (#26626)Joseph Wang1-0/+1
2021-10-09evtgen: fix pythia typo (#26625)Joseph Wang1-1/+1
2021-10-09librsvg: fix build when does not use -pthread for linking (#26592)Bernhard Kaindl1-0/+2
librsvg uses pthread_atfork() but does not use -pthread on Ubuntu 18.04 %gcc@8
2021-10-08Add R 4.1.1 (#26589)Derek Ryan Strong1-0/+1
2021-10-09Add Julia 1.6.3 (#26624)Derek Ryan Strong1-0/+1
2021-10-08py-twisted,py-storm: dep on zope.interface, bump storm version (#26610)Bernhard Kaindl3-7/+13
* py-twisted,py-storm: dep on zope.interface, bump storm version py-twisted and py-storm's import tests need zope.interface. py-storm: Use pypi and add version 0.25. It didn't change reqs. zope.infterface@4.5.0 imports removed Feature: Use setuptools@:45 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-storm: all deps updated with type=('build', 'run') Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08Trilinos: update for CUDA and Nalu-Wind (#26614)psakievich2-4/+5
2021-10-08py-hypothesis: Add variants django, dumpy, pandas and fix import tests (#26604)Bernhard Kaindl1-1/+29
2021-10-08py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency (#26596)Manuela Kuhn4-2/+8
* py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency * Update var/spack/repos/builtin/packages/py-bleach/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-pymatgen: fix build of old versions, bump version to 2021.3.9 (#26249)Bernhard Kaindl5-5/+32
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-anytree: Add dep py-six@1.9.0 as required by setup.py (#26603)Bernhard Kaindl1-0/+2
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-matplotlib: fix 3.4.3 (#26586)Manuela Kuhn1-2/+2
* py-matplotlib: fix 3.4.3 * Update var/spack/repos/builtin/packages/py-matplotlib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08py-traceback2: Fix depends_on: add six and py-linecache2 (#26607)Bernhard Kaindl1-0/+2
2021-10-08py-keras-preprocessing: Add missing deps: six@1.9.0: and numpy@1.9.1: (#26605)Bernhard Kaindl1-0/+2
* py-keras-preprocessing: Add missing deps: six@1.9.0: and numpy@1.9.1: Add deps: pip download --no-binary :all: keras-preprocessing==1.1.2 Collecting numpy>=1.9.1 Installing build dependencies: started Collecting six>=1.9.0 * Update var/spack/repos/builtin/packages/py-keras-preprocessing/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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