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Some variants have MPI dependencies, make sure they can be used only when the `mpi` variable is enabled.
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* adding 2nd bunch of nf-core deps from update/nextflow-tools
* Update var/spack/repos/builtin/packages/py-a2wsgi/package.py
* Update var/spack/repos/builtin/packages/py-apispec/package.py
* Update var/spack/repos/builtin/packages/py-bagit-profile/package.py
* Update var/spack/repos/builtin/packages/py-bagit-profile/package.py
* Update var/spack/repos/builtin/packages/py-bagit-profile/package.py
* Update var/spack/repos/builtin/packages/py-bdbag/package.py
* Update var/spack/repos/builtin/packages/py-schema-salad/package.py
* Update var/spack/repos/builtin/packages/py-schema-salad/package.py
* Update var/spack/repos/builtin/packages/py-tuspy/package.py
* Update var/spack/repos/builtin/packages/py-schema-salad/package.py
* Update var/spack/repos/builtin/packages/py-schema-salad/package.py
* Update var/spack/repos/builtin/packages/py-bdbag/package.py
* Update var/spack/repos/builtin/packages/py-bdbag/package.py
* Update var/spack/repos/builtin/packages/py-bioblend/package.py
* Update var/spack/repos/builtin/packages/py-circus/package.py
* Update var/spack/repos/builtin/packages/py-circus/package.py
* Update var/spack/repos/builtin/packages/py-cloudbridge/package.py
* Update var/spack/repos/builtin/packages/py-cloudbridge/package.py
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* nextflow recipe: added latest stable version
* tower-cli recipe: added latest release
* recipes tower-agent and tower-cli renamed to nf-tower-agent and nf-tower-cli
* recipes nf-tower-agent and nf-tower-cli: small fix
* nf-core-tools recipe: added most py- dependencies
* nf-core-tools: recipe without galaxy-tool-util (for testing)
* fixed typos in py-yacman recipe
* fixed typos in py-pytest-workflow recipe
* fixed typo in nf-core-tools recipe
* fixed typos in py-yacman recipe
* fixes in recipes for py-questionary and py-url-normalize
* fixes to py-yacman recipe
* style fixes to py- packages that are dependencies to nf-core-tools
* fix in py-requests-cache recipe
* added missing dep in py-requests-cache recipe
* nf-core-tools deps: removed redundant python dep for py packages oyaml and piper
* nf-core-tools recipe: final, incl dep on py-galaxy-tool-util
* nf-core-tools: new version with extra dependency
* commit to merge packages on focus from update/nextflow-tools
* nf-core: commenting galaxy dep for this pr
* Update var/spack/repos/builtin/packages/py-requests-cache/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-requests-cache/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed nf-core-tools from this branch, will be back at the end
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* spectre: add v2022.12.16
* [@spackbot] updating style on behalf of sxs-bot
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
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Make the package a proper ROCm package.
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Co-authored-by: Sebastian Grimberg <sjg@amazon.com>
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by oneapi packages (#34253)
Co-authored-by: Sean Koyama <skoyama@anl.gov>
Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
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Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
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Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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* acts: new versions 19.11.0, 21.0.0, 21.1.0
https://github.com/acts-project/acts/compare/v19.10.0...v19.11.0:
- python 3.8 required if ACTS_BUILD_EXAMPLES_PYTHON_BINDINGS
https://github.com/acts-project/acts/compare/v20.3.0...v21.0.0:
- python 3.8 required if ACTS_BUILD_EXAMPLES_PYTHON_BINDINGS
https://github.com/acts-project/acts/compare/v21.0.0...v21.1.0:
- no build system changes
* acts: depends_on python@3.8: when sometimes
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openPMD, a metadata standard on top of backends like ADIOS2 and HDF5,
is implemented in ParaView 5.9+ via a Python3 module.
Simplify Conflicts & Variant
Add to ECP Data Vis SDK
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* Patch dill._dill._is_builtin_module
* Fix style
* Add test
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* PICMI: 0.0.22
* WarpX: 22.11, 22.12
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(#34516)
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* renamed tower-agent and tower-cli with prefif nf-
* new nextflow package version
* added newest versions (today) for nf-tower-agent and nf-tower-cli
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* Add py-bmtk and py-neurotools
* py-bmtk: version bump
* [@spackbot] updating style on behalf of heerener
* Maybe the copyright needs to be extended to 2022 for the check to pass
* Process review remarks
* Update var/spack/repos/builtin/packages/py-neurotools/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add GFE packages, Update pFUnit
* Remove citibeth as maintainer per her request
* Version 3.3.0 is an odd duck. Needs a v
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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