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2020-03-18adol-c:updating sources location (#15532)gauthier121-8/+13
* adol-c:updating sources location * Update var/spack/repos/builtin/packages/adol-c/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-18package/QGIS: fix cmake/FindPyqt.py (#15455)Sinan2-0/+27
* fix cmake/FindPyqt.py * apply patch * generalize patch * rename patch * fix typo Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-03-18Use python extend_path as pyqt sip fix (#15297)Sinan3-5/+29
* try extend path to solve PyQt5.sip not found issue * disable private sip installation in sippackage class * undo manual PyQt5 dir creation in py-sip site-packages dir * fix typo * fix typo * also apply fix to PyQt4 * tidy up * flake8 and tidy up * tidy and undo hardcoding of python_include_dir * replace hardcoded python inc dir * fix minor issues * rethink include dir variable name * improve style * add new versions * implement new sip setup to qsci installation * set sip-incdir correctly for the new setup * setup extend_path thing before qsci python bindings * take care of conflict * flake8 * also extend for PyQt4 * improve style * improve style * SipPackage build sys should depend on py-sip * consolidate extend_path fixes into SipPackage * fix typo * fix bugs * flake8 * revert sip doc to pre-resource setup * import os module * flake8 Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-18revbayes: Update pre-build process (#15485)Nick Booher1-0/+5
2020-03-18Cctools 7.1.0 (#15506)Benjamin Tovar1-12/+41
* update to 7.1.0 * adds gettext as dependency (needed to link with python) * disable python2 or python3 as needed
2020-03-18add new package: acl (#15514)darmac1-0/+30
2020-03-18add new package: userspace-rcu (#15515)darmac2-0/+44
2020-03-18CGNS: Version update (#15523)Greg Sjaardema1-1/+8
* CGNS: Version update The CGNS library has several new versions. There was a format-changing change in 3.4.0 which was removed for 3.4.1. The change was then added again and released with a change to the major version (4.0.0). Note that 4.0.0 should be close to the functionality of 3.4.0. * CGNS: Add shared variant Added the `shared`variant to make the CMake build correctly pick up the RPATH settings.
2020-03-18update util-linux to version: 2.33:2.35.1 (#15529)darmac1-0/+4
2020-03-18triangle: add X11 dependency. (#15533)Toyohisa Kameyama1-0/+2
2020-03-18xsetpointer: fix wrong dependency type. (#15534)Toyohisa Kameyama1-3/+3
2020-03-18adding the fortran option for hdf5 dependency for comptatibility with petsc ↵gauthier121-1/+1
requirement (#15536)
2020-03-18xts: add some dependencies. (#15537)Toyohisa Kameyama1-8/+11
2020-03-18Remove trailing newline. (#15539)Robert Kalescky1-0/+5
2020-03-18r-openssl requires C99. (#15541)Robert Kalescky1-0/+5
2020-03-18py-numpy: add 1.18.2 (#15546)Adam J. Stewart1-1/+2
2020-03-18Add package anaconda3 (#15404)Amjad Kotobi1-0/+53
2020-03-18Added a package for the DiHydrogen distributed linear algebra library. (#15426)Brian Van Essen1-0/+111
* Added a package for the DiHydrogen distributed linear algebra library. * Updated recipe to provide cuda architecture constaints. * Addressed reviewer comments * Fixed flake 8
2020-03-18QMCPACK Update March 2020 (#15511)Nichols A. Romero1-5/+17
* Clean-up description of variants. * Support AFQMC with CUDA.
2020-03-18openPMD-api: HDF5 1.12.0 Support (#15530)Axel Huebl2-0/+27
Fix API breakage in HDF5 1.12.0 for released versions.
2020-03-18Previous qt package file changes broke the openspeedshop gui build. (#15471)Jim Galarowicz2-2/+3
* Previous qt changes broke the openspeedshop gui build. This puts back the changes that caused the breakage. * Update the qt version to be more robust. Co-authored-by: Galarowicz, James <jgalarowicz@newmexicoconsortium.org>
2020-03-17update checksum for intel-tbb@2020.1 (#15528)eugeneswalker1-1/+1
2020-03-17SEACAS: Add versions 2020-03-16 and 2020-01-16 (#15525)Greg Sjaardema1-0/+2
2020-03-17MPICH: optional libxml2 support; NAG patches (#15235)Sergey Kosukhin5-2/+222
* Add patches when building with NAG * Make libxml2 support optional. Also include conflict for @:3.2~hydra+libxml2 since @:3.2~hydra does not require libxml2 support * Add '--disable-silent-rules' to get more verbose output during the build
2020-03-17Corrected compiler filtering for TAU makefiles (#15342)wspear1-2/+20
* Implemented working file filtering to replace spack compiler wrapper with real compiler. * Using string=True instead of re.escape. Using self.prefix.lib instead of appending /lib. Co-authored-by: Wyatt Spear <wspear@cs.uoregon.edu>
2020-03-17geant4: Removed unnecessary definition of xerces-c. (#15513)Tomoki, Karatsu1-1/+0
2020-03-17Update and exetend VecGeom (#14520)Seth R. Johnson1-32/+79
* Add new vecgeom versions, add cuda support, automate target options * Add ROOT, GDML, and external VecCore support to VecGeom * Address reviewer comments * Update vecgeom for CUDA * Update versions
2020-03-17nfs-utils: added package at v2.4.2 (#15491)darmac1-0/+34
2020-03-16cap binutils version @:2.33.1 due to build failures with 2.34 (#15504)eugeneswalker1-1/+1
2020-03-16veccore: added package at v0.6.0 (#15472)Seth R. Johnson1-0/+40
2020-03-16CMakePackage: convert variants to CMake arguments (#14376)Seth R. Johnson1-0/+8
Add a 'define_from_variant` helper function to CMake-based Spack packages to convert package variants into CMake arguments. For example: args.append('-DFOO=%s' % ('ON' if '+foo' in self.spec else 'OFF')) can be replaced with: args.append(self.define_from_variant('foo')) The following conversions are handled automatically: * Flag variants will be converted to CMake booleans * Multivalued variants will be converted to semicolon-separated strings * Other variant values are converted to CMake string arguments This also adds a 'define' helper method to convert any variable to a CMake argument. It has the same conversion rules as 'define_from_variant' (but operates directly on values rather than requiring the user to supply the name of a package variant).
2020-03-16silo: depends on hdf5@:1.10.999 (#15495)Erik Schnetter1-0/+1
Silo does not build with HDF5 1.12.
2020-03-16tixi: added package at v3.0.3 (#15490)Melven Roehrig-Zoellner1-0/+24
2020-03-16swig: added v4.0.1 (#15496)Erik Schnetter1-0/+1
2020-03-16ncurses: added v6.2 (#15494)Erik Schnetter1-0/+1
2020-03-16cmake: added v3.16.5 (#15492)Erik Schnetter1-0/+1
2020-03-16unqlite: added package at v1.1.9 (#15501)Matthieu Dorier1-0/+18
2020-03-15gcc: Don't apply macOS 9.2.0 patch for 9.3.0 (#15493)Erik Schnetter1-1/+1
The patch neither applies nor is necessary.
2020-03-14Limit binutils to <= 2.33.1 (#15470)Tim Haines1-1/+1
HPCToolKit <= 2020.03.01 does not build with binutils 2.34.
2020-03-13LIBXSMM 1.15 (#15482)Hans Pabst1-2/+3
* LIBXSMM 1.15 * LIBXSMM: renamed development version according to the related branch on GitHub.
2020-03-13py-astpretty: add new package (#15484)Adam J. Stewart1-0/+21
* py-astpretty: add new package * pkg_resources needed at run-time
2020-03-13package: Add fetch_options variable (#15317)Michael Kuhn10-35/+73
PR #15212 added a new connect_timeout option that can be overridden using fetch_options but had to specified per-version. This adds a new per-package variable that can be used to override fetch_options for all versions in the package. This includes connect_timeout as well as 'cookie' (e.g. for the jdk package). Packages can combine package-level fetch_options with per-version fetch_options, in which case the version fetch_options completely override the package-level fetch_options. This commit includes tests for the added behavior.
2020-03-13pgi: add missing paths in setup_run_environment (#15480)Melven Roehrig-Zoellner1-0/+3
2020-03-13Add py-h5glance versions 0.5 & 0.6 (#15461)Thomas Kluyver1-1/+3
* Add py-h5glance versions 0.5 & 0.6 * List versions newest to oldest
2020-03-13Add new ACTS version (#15479)Hadrien G1-0/+1
2020-03-12Add source highlight package (#15473)Hector1-0/+21
* add GNU source-highlight package * fix flake8 * Allows the package to download from GNU mirrors
2020-03-12gcc: Add 9.3.0 (#15469)Michael Kuhn1-0/+1
2020-03-12cpprestsdk: fix common error and, use boost@1.69.0 or lower (#15463)noguchi-k2-1/+51
2020-03-12Add Caliper v2.3.0 (#15468)David Böhme1-1/+2
2020-03-12Add package jblob-3.0 (#15400)Amjad Kotobi1-0/+35
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