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2023-05-18Update py-nltk (#37703)Benjamin Meyers1-6/+171
* Update py-nltk * [@spackbot] updating style on behalf of meyersbs * Update var/spack/repos/builtin/packages/py-nltk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-18update package nccl version 2.17, 2.18 (#37721)Aditya Bhamidipati1-0/+2
2023-05-18New package py-tensorly (#37705)Benjamin Meyers1-0/+25
2023-05-18New package py-scikit-tensor-py3 (#37706)Benjamin Meyers1-0/+22
2023-05-18Update py-jedi 0.17.2 checksum in package.py (#37700)vucoda1-1/+1
Pypi for jedi-0.17.2.tar.gz does not match the package.py file. https://pypi.org/project/jedi/0.17.2/#copy-hash-modal-60e943e3-1192-4b12-90e2-4d639cb5b4f7
2023-05-18Remove references to gmake executable, only use make (#37280)Dom Heinzeller3-6/+3
2023-05-18dlb: add v3.3.1 (#37759)Victor Lopez Herrero1-0/+1
2023-05-18harfbuzz: add 7.3.0 (#37753)Michael Kuhn1-5/+2
Do not prefer 5.3.1 anymore since it does not build with newer compilers. Linux distributions have also moved to 6.x and newer.
2023-05-18[babelstream] FIX: maintainers list missing a comma (#37761)kaanolgu1-1/+2
2023-05-18update R: add version 4.3.0 (#37090)Glenn Johnson1-0/+2
2023-05-18Cran updates (#37296)Glenn Johnson321-174/+965
* add version 1.28.3 to r-hexbin * add version 5.0-1 to r-hmisc * add version 0.5.5 to r-htmltools * add version 1.6.2 to r-htmlwidgets * add version 1.4.2 to r-igraph * add version 0.42.19 to r-imager * add version 1.0-5 to r-inum * add version 0.9-14 to r-ipred * add version 1.3.2 to r-irkernel * add version 2.2.0 to r-janitor * add version 0.1-10 to r-jpeg * add version 1.2.2 to r-jsonify * add version 0.9-32 to r-kernlab * add version 1.7-2 to r-klar * add version 1.42 to r-knitr * add version 1.14.0 to r-ks * add version 2.11.0 to r-labelled * add version 1.7.2.1 to r-lava * add version 0.6-15 to r-lavaan * add version 2.1.2 to r-leaflet * add version 2.9-0 to r-lfe * add version 1.1.6 to r-lhs * add version 1.1-33 to r-lme4 * add version 1.5-9.7 to r-locfit * add version 0.4.3 to r-log4r * add version 5.6.18 to r-lpsolve * add version 0.2-11 to r-lwgeom * add version 2.7.4 to r-magick * add version 1.22.1 to r-maldiquant * add version 1.2.11 to r-mapproj * add version 1.6 to r-markdown * add version 7.3-59 to r-mass * add version 1.5-4 to r-matrix * add version 0.63.0 to r-matrixstats * add version 4.2-3 to r-memuse * add version 4.0-0 to r-metafor * add version 1.8-42 to r-mgcv * add version 3.15.0 to r-mice * add version 0.4-5 to r-mitml * add version 2.0.0 to r-mixtools * add version 0.1.11 to r-modelr * add version 1.4-23 to r-multcomp * add version 0.1-9 to r-multcompview * add version 0.1-13 to r-mutoss * add version 1.18.1 to r-network * add version 3.3.4 to r-nleqslv * add version 3.1-162 to r-nlme * add version 0.26 to r-nmf * add version 0.60-17 to r-np * add version 4.2.5.2 to r-openxlsx * add version 2022.11-16 to r-ordinal * add version 0.6.0.8 to r-osqp * add version 0.9.1 to r-packrat * add version 1.35.0 to r-parallelly * add version 1.3-13 to r-party * add version 1.2-20 to r-partykit * add version 1.7-0 to r-pbapply * add version 0.3-9 to r-pbdzmq * add version 1.2 to r-pegas * add version 1.5-1 to r-phytools * add version 1.9.0 to r-pillar * add version 1.4.0 to r-pkgbuild * add version 2.1.0 to r-pkgcache * add version 0.5.0 to r-pkgdepends * add version 2.0.7 to r-pkgdown * add version 1.3.2 to r-pkgload * add version 0.1-8 to r-png * add version 1.1.22 to r-polspline * add version 1.0.1 to r-pool * add version 1.4.1 to r-posterior * add version 3.8.1 to r-processx * add version 2023.03.31 to r-prodlim * add version 1.0-12 to r-proj4 * add version 2.5.0 to r-projpred * add version 0.1.6 to r-pryr * add version 1.7.5 to r-ps * add version 1.0.1 to r-purrr * add version 1.3.2 to r-qqconf * add version 0.25.5 to r-qs * add version 1.60 to r-qtl * add version 0.4.22 to r-quantmod * add version 5.95 to r-quantreg * add version 0.7.8 to r-questionr * add version 1.2.5 to r-ragg * add version 0.15.1 to r-ranger * add version 3.6-20 to r-raster * add version 2.2.13 to r-rbibutils * add version 1.0.10 to r-rcpp * add version 0.12.2.0.0 to r-rcpparmadillo * add version 0.1.7 to r-rcppde * add version 0.3.13 to r-rcppgsl * add version 1.98-1.12 to r-rcurl * add version 1.2-1 to r-rda * add version 2.1.4 to r-readr * add version 1.4.2 to r-readxl * add version 1.0.6 to r-recipes * add version 1.1.6 to r-repr * add version 1.2.16 to r-reproducible * add version 0.3.0 to r-require * add version 1.28 to r-reticulate * add version 2.0.7 to r-rfast * add version 1.6-6 to r-rgdal * add version 0.6-2 to r-rgeos * add version 1.1.3 to r-rgl * add version 0.2.18 to r-rinside * add version 4-14 to r-rjags * add version 1.3-1.8 to r-rjsonio * add version 2.21 to r-rmarkdown * add version 0.9-2 to r-rmpfr * add version 0.7-1 to r-rmpi * add version 6.6-0 to r-rms * add version 0.10.25 to r-rmysql * add version 0.8.7 to r-rncl * add version 2.4.11 to r-rnexml * add version 0.95-1 to r-robustbase * add version 1.3-20 to r-rodbc * add version 7.2.3 to r-roxygen2 * add version 1.4.5 to r-rpostgres * add version 0.7-5 to r-rpostgresql * add version 0.8.29 to r-rsconnect * add version 0.4-15 to r-rsnns * add version 2.3.1 to r-rsqlite * add version 0.7.2 to r-rstatix * add version 1.1.2 to r-s2 * add version 0.4.5 to r-sass * add version 0.1.9 to r-scatterpie * add version 0.3-43 to r-scatterplot3d * add version 3.2.4 to r-scs * add version 1.6-4 to r-segmented * add version 4.2-30 to r-seqinr * add version 0.26 to r-servr * add version 4.3.0 to r-seurat * add version 1.0-12 to r-sf * add version 0.4.2 to r-sfheaders * add version 1.1-15 to r-sfsmisc * add version 1.7.4 to r-shiny * add version 1.9.0 to r-signac * add version 1.6.0.3 to r-smoof * add version 0.1.7-1 to r-sourcetools * add version 1.6-0 to r-sp * add version 1.3-0 to r-spacetime * add version 7.3-16 to r-spatial * add version 2.0-0 to r-spatialeco * add version 1.2-8 to r-spatialreg * add version 3.0-5 to r-spatstat * add version 3.0-1 to r-spatstat-data * add version 3.1-0 to r-spatstat-explore * add version 3.1-0 to r-spatstat-geom * add version 3.1-0 to r-spatstat-linnet * add version 3.1-4 to r-spatstat-random * add version 3.0-1 to r-spatstat-sparse * add version 3.0-2 to r-spatstat-utils * add version 2.2.2 to r-spdata * add version 1.2-8 to r-spdep * add version 0.6-1 to r-stars * add version 1.5.0 to r-statmod * add version 4.8.0 to r-statnet-common * add version 1.7.12 to r-stringi * add version 1.5.0 to r-stringr * add version 1.9.1 to r-styler * add version 3.5-5 to r-survival * add version 1.5-4 to r-tclust * add version 1.7-29 to r-terra * add version 3.1.7 to r-testthat * add version 1.1-2 to r-th-data * add version 1.2 to r-tictoc * add version 1.3.2 to r-tidycensus * add version 1.2.3 to r-tidygraph * add version 1.3.0 to r-tidyr * add version 2.0.0 to r-tidyverse * add version 0.2.0 to r-timechange * add version 0.45 to r-tinytex * add version 0.4.1 to r-triebeard * add version 1.0-9 to r-truncnorm * add version 0.10-53 to r-tseries * add version 0.8-1 to r-units * add version 4.3.0 to r-v8 * add version 1.4-11 to r-vcd * add version 1.14.0 to r-vcfr * add version 0.6.2 to r-vctrs * add version 1.1-8 to r-vgam * add version 0.4.0 to r-vioplot * add version 1.6.1 to r-vroom * add version 1.72-1 to r-wgcna * add version 0.4.1 to r-whisker * add version 0.7.2 to r-wk * add version 0.39 to r-xfun * add version 1.7.5.1 to r-xgboost * add version 1.0.7 to r-xlconnect * add version 3.99-0.14 to r-xml * add version 0.13.1 to r-xts * add version 2.3.7 to r-yaml * add version 2.3.0 to r-zip * add version 1.8-12 to r-zoo * r-bigmem: dependency on uuid * r-bio3d: dependency on zlib * r-devtools: dependency cleanup * r-dose: dependency cleanup * r-dss: dependency cleanup * r-enrichplot: dependency cleanup * r-fgsea: dependency cleanup * r-geor: dependency cleanup * r-ggridges: dependency cleanup * r-lobstr: dependency cleanup * r-lubridate: dependency cleanup * r-mnormt: dependency cleanup * r-sctransform: version format correction * r-seuratobject: dependency cleanup * r-tidyselect: dependency cleanup * r-tweenr: dependency cleanup * r-uwot: dependency cleanup * new package: r-clock * new package: r-conflicted * new package: r-diagram * new package: r-doby * new package: r-httr2 * new package: r-kableextra * new package: r-mclogit * new package: r-memisc * new package: r-spatstat-model * r-rmysql: use mariadb-client * r-snpstats: add zlib dependency * r-qs: add zstd dependency * r-rcppcnpy: add zlib dependency * black reformatting * Revert "r-dose: dependency cleanup" This reverts commit 4c8ae8f5615ee124fff01ce43eddd3bb5d06b9bc. * Revert "r-dss: dependency cleanup" This reverts commit a6c5c15c617a9a688fdcfe2b70c501c3520d4706. * Revert "r-enrichplot: dependency cleanup" This reverts commit 65e116c18a94d885bc1a0ae667c1ef07d1fe5231. * Revert "r-fgsea: dependency cleanup" This reverts commit ffe2cdcd1f73f69d66167b941970ede0281b56d7. * r-rda: this package is back in CRAN * r-sctransform: fix copyright * r-seurat: fix copyright * r-seuratobject: fix copyright * Revert "add version 6.0-94 to r-caret" This reverts commit 236260597de97a800bfc699aec1cd1d0e3d1ac60. * add version 6.0-94 to r-caret * Revert "add version 1.8.5 to r-emmeans" This reverts commit 64a129beb0bd88d5c88fab564cade16c03b956ec. * add version 1.8.5 to r-emmeans * Revert "add version 5.0-1 to r-hmisc" This reverts commit 517643f4fd8793747365dfcfc264b894d2f783bd. * add version 5.0-1 to r-hmisc * Revert "add version 1.42 to r-knitr" This reverts commit 2a0d9a4c1f0ba173f7423fed59ba725bac902c37. * add version 1.42 to r-knitr * Revert "add version 1.6 to r-markdown" This reverts commit 4b5565844b5704559b819d2e775fe8dec625af99. * add version 1.6 to r-markdown * Revert "add version 0.26 to r-nmf" This reverts commit 4c44a788b17848f2cda67b32312a342c0261caec. * add version 0.26 to r-nmf * Revert "add version 2.3.1 to r-rsqlite" This reverts commit 5722ee2297276e4db8beee461d39014b0b17e420. * add version 2.3.1 to r-rsqlite * Revert "add version 1.0-12 to r-sf" This reverts commit ee1734fd62cc02ca7a9359a87ed734f190575f69. * add version 1.0-12 to r-sf * fix syntax error
2023-05-18unifyfs: new v1.1 release (#37756)Cameron Stanavige1-3/+7
Add v1.1 release Update mochi-margo dependency compatible versions Update version range of libfabric conflict
2023-05-18[xrootd] New variants, new version, improve build config (#37682)Chris Green3-20/+128
* Add FNAL Spack team to maintainers * New variants and configuration improvements * Version dependent "no-systemd" patches. * New variants `client_only`, and `davix` * Better handling of `cxxstd` for different versions, including improved patching and CMake options. * Version-specific CMake requirements. * Better version-specific handling of `openssl` dependency. * `py-setuptools` required for `+python` build. * Specific enable/disable of CMake options and use of `-DFORCE_ENABLED=TRUE` to prevent unwanted/non-portable activation of features. * Better handling of `+python` configuration. * New version 5.5.5
2023-05-17maintainers: switch from list to directive (#37752)Tamara Dahlgren26-26/+26
2023-05-17Added version 1.3.1 (#37735)Brian Van Essen1-0/+1
2023-05-17lmod: fix build, bump patch version (#37744)Harmen Stoppels1-0/+3
2023-05-17whizard: build newer versions in parallel (#37422)Juan Miguel Carceller1-9/+6
2023-05-17libxcb: depend on python, remove releases that need python 2 (#37698)Harmen Stoppels1-10/+3
2023-05-17spack test: fix stand-alone test suite status reporting (#37602)Tamara Dahlgren1-3/+11
* Fix reporting of packageless specs as having no tests * Add test_test_output_multiple_specs with update to simple-standalone-test (and tests) * Refactored test status summary; added more tests or checks
2023-05-17celeritas: new version 0.2.2 (#37731)Seth R. Johnson1-1/+6
* celeritas: new version 0.2.2 * [@spackbot] updating style on behalf of sethrj
2023-05-17Tk/Tcl packages: speed up file search (#35902)Peter Scheibel2-4/+32
2023-05-17emacs: convert to new stand-alone test process (#37725)Tamara Dahlgren1-15/+30
2023-05-16libxpm package: fix RHEL8 build with libintl (#37713)Chris Green1-1/+1
Set LDFLAGS rather than LDLIBS
2023-05-16CI: Expand E4S ROCm stack to include missing DaV packages (#36843)kwryankrattiger3-1/+5
* CI: Expand E4S ROCm stack to include missing DaV packages Ascent: Fixup for VTK-m with Kokkos backend * DaV SDK: Removed duplicated openmp variant for ascent * Drop visit and add conflict for Kokkos * E4S: Drop ascent from CUDA builds
2023-05-16Revert "hdf5: fix showconfig (#34920)" (#37707)Harmen Stoppels1-18/+0
This reverts commit 192e564e26e919169aa926e92af7bd9a28cbb4f1.
2023-05-16Requirements and preferences should not define (non-git) versions (#37687)Peter Scheibel1-0/+1
Ensure that requirements `packages:*:require:@x` and preferences `packages:*:version:[x]` fail concretization when no version defined in the package satisfies `x`. This always holds except for git versions -- they are defined on the fly.
2023-05-16Update llvm recipe regarding libomptarget. (#36675)Ye Luo1-7/+28
2023-05-16libxcb/xcb-proto: Enable internal Python dependency (#37575)QuellynSnead2-7/+2
In the past, Spack did not allow two different versions of the same package within a DAG. That led to difficulties with packages that still required Python 2 while other packages had already switched to Python 3. The libxcb and xcb-proto packages did not have Python 3 support for a time. To get around this issue, Spack maintainers disabled their dependency on an internal (i.e., Spack-provided) Python (see #4145),forcing these packages to look for a system-provided Python (see #7646). This has worked for us all right, but with the arrival of our most recent platform we seem to be missing the critical xcbgen Python module on the system. Since most software has largely moved on to Python 3 now, let's re-enable internal Spack dependencies for the libxcb and xcb-proto packages.
2023-05-16Add conflict for pika with fmt@10 and +cuda/rocm (#37679)Mikael Simberg1-0/+3
2023-05-16Upgrading kosh to 3.0 (#37471)Robert Blake2-1/+18
* Upgrading kosh to 3.0. * Accidentally regressed the package, changing back. * Updating py-hdbscan versions for kosh. * Fixing bug in patch. * Adding 3.0.1 * Removing 3.0. * Updating package deps for hdbscan to match requirements.txt. * Version reqs for 3.0.*, need newer numpy and networkx * spack style * Reordering to match setup.py, adding "type" to python depends.
2023-05-15trilinos: @develop fixes (#37615)eugeneswalker1-1/+4
* trilinos@develop fixes * Update var/spack/repos/builtin/packages/trilinos/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> --------- Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2023-05-15circos: add v0.69-9 (#37479)Alec Scott1-0/+1
2023-05-15alluxio: add v2.9.3 (#37488)Alec Scott1-0/+1
2023-05-15codec2: add v1.1.0 (#37480)Alec Scott1-0/+1
2023-05-15coinutils: add v2.11.9 (#37481)Alec Scott1-0/+1
2023-05-15g2c: add v1.7.0 (#37482)Alec Scott1-0/+1
2023-05-15shadow: add v4.13 (#37485)Alec Scott1-0/+1
2023-05-15yoda: add v1.9.8 (#37487)Alec Scott1-0/+1
2023-05-15cpp-httplib: add v0.12.3 (#37490)Alec Scott1-0/+1
2023-05-15entt: add v3.11.1 (#37491)Alec Scott1-0/+1
2023-05-15harfbuzz: add v7.2.0 (#37492)Alec Scott1-0/+1
2023-05-15libconfuse: add v3.3 (#37493)Alec Scott1-0/+1
2023-05-15libnsl: add v2.0.0 (#37494)Alec Scott1-0/+1
2023-05-15p11-kit: add v0.24.1 (#37495)Alec Scott1-0/+1
2023-05-15packmol: add v20.0.0 (#37496)Alec Scott2-1/+2
* packmol: add v20.0.0 * Fix zoltan homepage url
2023-05-15perl-module-build-tiny: add v0.044 (#37497)Alec Scott1-0/+1
2023-05-15zoltan: add v3.901 (#37498)Alec Scott1-0/+1
2023-05-15bdii: add v6.0.1 (#37499)Alec Scott1-0/+1
2023-05-15audit-userspace: add v3.1.1 (#37505)Alec Scott1-0/+1
2023-05-15babl: add v0.1.106 (#37506)Alec Scott1-0/+1
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-08 17:20:23 +0000