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2020-10-21unzip: fix build for XCode 12 on macosx (#19453)Todd Gamblin1-2/+9
- [x] `build_targets` should use `macosx` on macOS, `generic` on other systems - [x] enable `LARGE_FILE_SUPPORT` by default
2020-10-21Add Madgraph 2.8.1 (#19400)iarspider4-47/+5
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Update madgraph to 2.8.1 * Changes from MR * Changes from MR Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21New package: py-fastdtw (#19427)Andrew W Elble1-0/+21
* py-fastdtw * cython is buildtime dep
2020-10-21Lapackpp package update (#19447)G-Ragghianti2-11/+28
* Updated blaspp package * Modified lapackpp for newest release * Formatting * Updates to lapackpp package for new version * Added dependency on cblas * Removed cblas dependency * updated to lapackpp * Added new version for blaspp and lapackpp * Removed debugging output * Converted version matching logic for for loop
2020-10-21py-drmaa: new package at 0.7.9 (#19451)Justin S1-0/+18
2020-10-21py-sqlalchemy-utils: new package at 0.36.8 (#19449)Justin S1-0/+19
2020-10-21py-jsonref: new package at 0.2 (#19448)Justin S1-0/+17
2020-10-21spla: Add version 1.2.1 (#19436)Simon Frasch1-0/+15
2020-10-21Skip malformed spec strings when searching for externals (#19438)Massimiliano Culpo1-4/+4
fixes #19266 fzf search method has also been updated Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
2020-10-21mpich : add python build-only dependency (#19403)Sajid Ali1-0/+5
* mpich: yaksa configure fix modified: var/spack/repos/builtin/packages/mpich/package.py * typo * python is not needed when building from preconfigured tarballs * add maintainers
2020-10-21New package: py-autograd (#19425)Andrew W Elble1-0/+27
* py-autograd * add missing dependencies
2020-10-21Added FFLAGS for apple-clang:11 (#17935)Lígia Diana Amorim1-0/+3
* Added FFLAGS for apple-clang:11 * Added issue # * Update var/spack/repos/builtin/packages/mpich/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21gromacs: fix SIMD argument for ppc64le (#19435)Massimiliano Culpo1-1/+1
fixes #19414
2020-10-21veloc: Add missing openssl dependency (#19437)Chuck Atkins1-0/+1
2020-10-21scipoptsuite (#19430)Andrew W Elble1-0/+30
2020-10-21py-hdbscan (#19428)Andrew W Elble1-0/+31
2020-10-21glog (#19423)Andrew W Elble1-0/+1
2020-10-21gflags (#19422)Andrew W Elble1-0/+1
2020-10-21coinutils (#19421)Andrew W Elble1-0/+19
2020-10-21Update git to 2.29.0 (#19415)albestro1-0/+5
2020-10-21update version to avoid compile error (#19363)darmac1-2/+4
* update version to avoid compile error * Update var/spack/repos/builtin/packages/r-rgdal/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21Provide doxygen@1.8.20. (#19412)Kelly (KT) Thompson1-0/+1
2020-10-21py-cvxopt: refine dependency @1.1.9 and update version to @1.2.5 (#19385)darmac1-1/+3
* refine dependency @1.1.9 and update version to @1.2.5 * refine depends_on() for python
2020-10-21Add FORM (#19397)iarspider1-0/+27
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add FORM * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add QD (#19402)iarspider1-0/+26
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add QD * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add Allinea to cray-libsci (#19232)Chris Richardson1-0/+4
2020-10-21quantum-espresso: fix build fail @6.6 and add conflicts a64fx. (#19383)Toyohisa Kameyama1-1/+9
* quantum-espresso: fix build fail @6.6 and add conflicts a64fx. * get patch to gitlab. * Add +patch
2020-10-20Add new packages: ispc & embree (#19361)Martin Aumüller4-0/+176
* Add new package: ispc * Add new package: embree
2020-10-20Thepeg fix (#19405)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Fixes for thepeg Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20mfem: Fix support for SUNDIALS and PETSc features (#19326)Josh Essman1-6/+13
* mfem: specify PETSC_DIR, link correct sundials libraries * fix: only use PETSC_DIR directly for static builds * fix: only use sundials nvecmpiplusx for MFEM 4.2+
2020-10-20tau unwind patch: only patch 2.29, not 2.29.1 (#19409)eugeneswalker1-1/+1
2020-10-20Lhapdf extends python (#19398)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * LHAPDF should extend Python to get env variables correct Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20deal.II: Add more conflicts due to symbol clashes between dependencies (#19408)Jean-Paul Pelteret1-1/+10
2020-10-20py-archspec: added new package at v0.1.1 (#19395)Massimiliano Culpo2-9/+30
2020-10-20axel: fix build error (#19387)darmac1-0/+4
2020-10-20mesa: Restrict llvm to < 11 (#19393)Chuck Atkins1-1/+1
2020-10-20refine setuptools version to avoid spec conflict (#19384)darmac1-1/+1
2020-10-20Adding AOCC compiler to SPACK community (#19345)GaneshPrasadMA1-0/+66
* Adding AOCC compiler to SPACK community The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. * Added unit tests for detection and flags for AOCC * Addressed reviewers comments w.r.t version checks and url,checksum related line lengths Co-authored-by: Test User <spack@example.com>
2020-10-20boost: fix building old versions with non-system glib and bzip2 (#19389)ketsubouchi2-0/+35
2020-10-20krims: disable float80 when non x86_64. (#19388)Toyohisa Kameyama2-0/+19
2020-10-20MRCPP: added new versions up to v1.3.5 (#19257)Roberto Di Remigio1-5/+16
Removed all alpha versions too
2020-10-20py-pyqt4: Require older version of PySIP (#19391)Seth R. Johnson1-1/+1
Fixes #19322, thanks sto @Sinan81.
2020-10-19add updated version of py-dnaio (#19374)Glenn Johnson1-1/+4
* add updated version of py-dnaio * Add py-setuptools-scm build dependency * Fine tune the py-xopen dependency constraint The needed version of xopen does not become specific until v0.4 of dnaio. * Set constraint on py-setuptools-scm The py-setuptools-scm dependency is needed beginning with v0.4.
2020-10-19updated version of py-cutadapt (#19373)Glenn Johnson1-4/+14
* updated version of py-cutadapt * Update dependency specs * Add py-setuptools-scm build dependency * More constraint fixes * Fix version range for py-xopen
2020-10-19Add new package: botan (#19362)Martin Aumüller1-0/+50
2020-10-19gdbm patch (#19380)Sajid Ali2-1/+2
* gdbm patching * compiler name fix * rename patch
2020-10-19external find for cpio (#19379)Sajid Ali1-0/+9
* external find for cpio * address reviewer comments
2020-10-19Added tau version 2.29.1 hash (#19329)wspear1-1/+2
* Added tau version 2.29.1 hash * Update var/spack/repos/builtin/packages/tau/package.py Make version name match branch name (master) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19add updated version of py-xopen (#19375)Glenn Johnson1-2/+5
* add updated version of py-xopen * Update dependency constraints * Further refine the python constraints Also, put them all together. * Put python constraints at top of list
2020-10-19netcdf-fortran: support for Cray compiler (#18971)Sergey Kosukhin1-0/+36
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