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2023-12-05MFEM: Add a patch to fix the `+gslib+shared+miniapps` build (#41399)Veselin Dobrev1-0/+5
* [mfem] Add a patch to resolve issue #41382 * [mfem] Spack CI wants "patch URL must end with ?full_index=1"
2023-12-05Update versions of GFE packages (#41429)Matthew Thompson6-0/+6
2023-12-05py-sphinx: add versions 7.2.4, 7.2.5 and 7.2.6 (#41411)Lydéric Debusschère1-0/+3
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-05libdap4: add explicit RPC dependency (#40019)Brian Vanderwende1-0/+8
2023-12-05sirius: fix build error with Fujitsu compiler (#41101)Kensuke WATANABE2-0/+14
2023-12-05py-sphinxcontrib-moderncmakedomain: add new package (#41331)Lydéric Debusschère1-0/+23
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-05openfoam-org: fix for being able to build manually checked out repository ↵Alberto Invernizzi1-3/+19
(#41000) * grep WM_PROJECT_VERSION from etc/bashrc This fixes the problem when building from a manually checked out repo which might have a different version wrt the one defined in the spack package (e.g. anything later than 5.0 is known as 5.x by the build system) * patch applies to just 5.0, in newer versions it is already addressed In `5.20171030` there's a commit https://github.com/OpenFOAM/OpenFOAM-5.x/commit/c66fba323c348012c2d4a75b9091406e1b3bcc31 very similar (almost identical) to what the patch `50-etc.patch` does. So the patch should not be applied to other than `5.0` otherwise it errors. References: - https://github.com/OpenFOAM/OpenFOAM-5.x/commits/20171030/etc/bashrc - https://github.com/OpenFOAM/OpenFOAM-5.x/blob/197d9d3bf20ac0641a8fe4f57be6a6325ca834b1/etc/bashrc#L45-L47
2023-12-05hpctoolkit: add conflict for recent intel-xed (#41413)Mark W. Krentel1-0/+1
Intel made an incompatible change in XED in 2023.08.21 that breaks hpctoolkit (at run time). Hpctoolkit develop can adapt (soon will), but older versions must use xed :2023.07.09.
2023-12-05cprnc: update sha256 for github artifacts (#41418)Jim Edwards1-1/+4
2023-12-05openblas: fix macOS build when using XCode 15 or newer (#41420)Ben Wibking2-0/+25
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-12-05arrow: add versions up to v14.0.1 (#41424)Mitch B1-0/+6
2023-12-05Updating the LBANN, Hydrogen, and DiHydrogen recipes (#41390)Brian Van Essen2-12/+48
* Updating the LBANN, Hydrogen, and DiHydrogen recipes for both new variants and to make sure that RPATHs are properly setup. Co-authored-by: bvanessen <bvanessen@users.noreply.github.com>
2023-12-04[intel] deprecate all versions (#41412)Robert Cohn1-0/+30
Deprecating intel package, which contains intel classic compilers. This package has not been updated in 3 years. Please use intel-oneapi-compilers instead.
2023-12-04A few changes to quantum-espresso (#41225)Ye Luo1-7/+23
* gipaw.x installed by cmake if version >= 5c4a4ce. gipaw.x will only be installed with cmake if the qe-gipaw version is >= 5c4a4ce. Currently, QE source uses the older f5823521 one. Here a patch to the submodule_commit_hash_records to use a newer qe-gipaw version. * Update package.py * Delete var/spack/repos/builtin/packages/quantum-espresso/gipaw-eccee44.patch * Update package.py * Restoring gipaw-eccee44 patch * Update package.py * Add fox variant in quantum-espresso * Fix an issue introduced in #36484. Patches are 7.1 only. * Change plugin handling. * formatting. * Typo correction * Refine conflict --------- Co-authored-by: S. Alexis Paz <alexis.paz@gmail.com>
2023-12-04Add EGL support to ParaView and Glew (#39800)John Biddiscombe4-12/+137
* Add EGL support to ParaView and Glew add a package for egl that provides GL but also adds EGL libs and headers for projects that need them Fix a header problem with the opengl package Format files using black * better description for egl variant description Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com> * better check/setup of non egl variant dependencies Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com> * Add biddisco as maintainer * Fix unused var style warning * Add egl conflicts for other gl providers --------- Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>
2023-12-04direnv: add v2.33.0 (#41397)Alec Scott1-0/+1
2023-12-04zlib-ng: add v2.1.5 (#41402)Harmen Stoppels1-0/+1
2023-12-03Windows: fix kit base path and reference to windows registry key (#41388)James Smillie1-1/+1
* Proper handling of argument passed as semicolon-separated str * Fix reference to windows registry key in win-wdk
2023-12-02Allow exago to use hiop@develop past v1.0.1 (#41384)Jaelyn Litzinger1-2/+3
2023-12-01resolve: add package with cuda and rocm support (#40871)Cameron Rutherford1-0/+62
2023-12-01Add MUMPS versions 5.6.0, 5.6.1 and 5.6.2 (#41386)Julien Cortial1-0/+3
The patch for version 5.5.x still applies to 5.6.x.
2023-12-01Fix curl install using Intel compilers (#41380)Dom Heinzeller1-0/+6
When using Intel to build curl, add 'CFLAGS=-we147' to the configure args to fix error 'compiler does not halt on function prototype mismatch'
2023-12-01Add XCDF. (#41379)Felix Werner2-0/+31
2023-12-01Add PhotoSpline. (#41374)Felix Werner1-0/+28
2023-12-01MET fixes for 11.1 and HDF4 support (#41372)Brian Vanderwende1-1/+7
* MET fixes for 11.1 and HDF4 support * Fix zlib reference in MET
2023-12-01removed cmake build version pointing to fork (#41368)Dewi1-1/+0
2023-12-01Libfabric: Introduce OPX provider conflict for v1.20.0 (#41343)Jack Morrison1-0/+6
* Libfabric: Introduce OPX provider conflict for v1.20.0 * Add message to libfabric 1.20.0 opx provider conflict
2023-12-01amrex: add v23.12 (#41385)Weiqun Zhang1-0/+1
2023-12-01py-pyglet: version bump (#41082)Erik Heeren1-4/+24
* py-pyglet: version bump * py-pyglet: use zip instead of whl, update dependencies * py-pyglet: 2.0.9 and 2.0.10 zips should be downloaded from github * py-pyglet: style * py-pyglet: use virtual packages in dependencies Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * py-pyglet: doesn't depend on py-future any more * py-pyglet: remove glx dependency * py-pyglet: back to the pypi zipfiles with patch instead --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-12-01verible: add new package (#41270)Dave Keeshan1-0/+56
* Add initial version of verible to spack * Update to use explict url path for each release, as the release tagh includes extra data, also added the bottom most point of gcc, gcc9
2023-12-01py-keras: add v3.0.0 (#41356)Adam J. Stewart2-29/+76
* py-keras: add v3.0.0 * Older keras actually requires protobuf * Correct url_for_version * Capitalization is important * Keep pil and pydot deps
2023-12-01Various FleCSI updates (#41068)Richard Berger1-28/+9
* flecsi: remove deprecated versions * flecsi: add explicit conflict for backend=hpx +hdf5 * flecsi: propagate +openmp to kokkos and legion * flecsi: remove doc variant prior to @2.2 It wouldn't do anything meaningful and won't install the documentation. --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-12-01dftbplus: Update and add upstream maintainer (#33243)Rohit Goswami1-27/+179
* dftbp: Update and add upstream maintainer * dftbp: Trust in the hybrid cmake builds * dftbp: Handle scalapack better * dftbp: Refactor as per review * dftbp: Build shared for python * dftbp: Address review comments * dftbp: Add another maintainer * dftp: Fix typo * dftbp: Arpack for serial builds only * dftbp: Update option docs * dftbp: Update documentation for elsi * dftbp: Add comment for context * dftbp: Tighter bounds on python * dftbp: Add negf only when shared * dftbp: Fix typo * dftbp: Update sha256 * dftpb: Add when directive for cmake and ninja * dftbp: Enforce comment --------- Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov> Co-authored-by: awvwgk <awvwgk@users.noreply.github.com> Co-authored-by: iamashwin99 <iamashwin99@users.noreply.github.com> Co-authored-by: Ashwin Kumar Karnad <46030335+iamashwin99@users.noreply.github.com> Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com> Co-authored-by: tldahlgren <tldahlgren@users.noreply.github.com>
2023-12-01eccodes: add v2.32.0, v2.31.0 (#40770)Victoria Cherkas1-1/+4
* eccodes new versions and dependencies * Suggested changes for multiple variant defaults * Update var/spack/repos/builtin/packages/eccodes/package.py --------- Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-12-01py-cma: new package (#41326)Lydéric Debusschère1-0/+32
* py-pycma: new package * rename py-pycma in py-cma; py-cma: use pypi instead of github sources --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01py-mahotas: new package (#41329)Lydéric Debusschère1-0/+20
* py-mahotas: new package * py-mahotas: relax version constraint on numpy --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01LAMMPS updates (#40879)Richard Berger1-13/+59
* lammps: add new stable version 20230802.1 * lammps: add missing potential download for +mesont * lammps: fix python package install * Update var/spack/repos/builtin/packages/lammps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * lammps: py-numpy and py-mpi4py should be build and run deps * lammps: add new 20231121 release - MPIIO package has been removed -> disable mpiio variant - LAMMPS_EXCEPTIONS is now always on -> disable exceptions variant - CMake 3.16+ is now required - Kokkos 4.1.0 is now supported --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01py-xmlplain: new package (#41324)Lydéric Debusschère1-0/+20
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01py-requests-file: new package (#41328)Lydéric Debusschère1-0/+21
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01[add] py-autodocsumm: new package (#41309)Lydéric Debusschère1-0/+21
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01py-sphinx-jinja2-compat: new package (#41310)Lydéric Debusschère2-0/+44
* [add] py-sphinx-jinja2-compat: new package * py-whey-pth: new package, dependence of py-sphinx-jinja2-compat --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01py-sphinx-removed-in: new package (#41325)Lydéric Debusschère1-0/+20
* py-sphinx-removed-in: new package * py-sphinx-removed-in: fix dependence --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01petsc, py-petsc4py: add v3.20.2 (#41366)Satish Balay2-0/+2
2023-12-01py-urllib3: add 2.1.0 and 2.0.7 (#41358)Manuela Kuhn1-4/+8
2023-12-01Update py-cylc-flow (add version 8.2.3) (#41209)Dom Heinzeller2-2/+8
* Add missing runtime dependency on py-colorama to py-ansimarkup * Add py-metomi-isodatetime@3.1.0 * New package py-graphql-relay * Update py-cylc-flowi, add version 8.2.3 * Fix merge conflict * Revert mistake in var/spack/repos/builtin/packages/py-cylc-flow/package.py * Update py-metomi-isodatetime dependencies for py-cylc-flow * Add 'climbfuji' to list of maintainers for py-cylc-flow
2023-12-01py-beartype: new package with versions 0.15.0 and 0.16.2 (#39759)Christopher Christofi1-0/+20
* py-beartype: new package with version 0.15.0 * Update var/spack/repos/builtin/packages/py-beartype/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-beartype: depend on python 3.8 or higher * py-beartype: add new version 0.16.2 --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01py-mpi4py: fix build with Apple Clang (#41362)Adam J. Stewart1-5/+3
* py-mpi4py: fix build with Apple Clang * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-11-30vtk-m: bump vtk-m 2.1.0 (#41351)Vicente Bolea2-3/+83
* vtk-m: bump vtk-m 2.1.0 * Update package.py * Update package.py
2023-11-30Add support for new versions of TFEL and MGIS (#41357)Thomas Helfer2-17/+31
* Add new versions to TFEL and MGIS
2023-11-30[intel-mpi] deprecation (#41322)Robert Cohn1-1/+22
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